RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 HSBP1O75506 76 aa8.24□□□□□ -1.09
USP4-206ENST00000461553 LINC00158P58513 81 aa8.24□□□□□ -1.09
USP4-206ENST00000461553 PRLHP81277 87 aa8.24□□□□□ -1.09
USP4-206ENST00000461553 TMEM238C9JI98 176 aa8.23□□□□□ -1.09
USP4-206ENST00000461553 TSPAN13O95857 204 aa8.23□□□□□ -1.09
USP4-206ENST00000461553 FAM229BQ4G0N7 80 aa8.22□□□□□ -1.09
USP4-206ENST00000461553 MEIG1Q5JSS6 88 aa8.22□□□□□ -1.09
USP4-206ENST00000461553 CBLN2Q8IUK8 224 aa8.22□□□□□ -1.09
USP4-206ENST00000461553 A0A0U1RRA0 63 aa8.21□□□□□ -1.1
USP4-206ENST00000461553 M0R378 163 aa8.21□□□□□ -1.1
USP4-206ENST00000461553 ATP6V1G1O75348 118 aa8.21□□□□□ -1.1
USP4-206ENST00000461553 Q8NDZ9 215 aa8.21□□□□□ -1.1
USP4-206ENST00000461553 ANAPC11Q9NYG5 84 aa8.21□□□□□ -1.1
USP4-206ENST00000461553 H0Y8G0 127 aa8.2□□□□□ -1.1
USP4-206ENST00000461553 FAM19A2Q8N3H0 131 aa8.2□□□□□ -1.1
USP4-206ENST00000461553 HERV-K104P63124 156 aa8.19□□□□□ -1.1
USP4-206ENST00000461553 IGKV2D-26A0A0A0MRZ7 120 aa8.18□□□□□ -1.1
USP4-206ENST00000461553 SMIM13P0DJ93 91 aa8.18□□□□□ -1.1
USP4-206ENST00000461553 KRTAP13-2Q52LG2 175 aa8.18□□□□□ -1.1
USP4-206ENST00000461553 LINC00304Q8N9R0 145 aa8.18□□□□□ -1.1
USP4-206ENST00000461553 LINC00587B1AMM8 73 aa8.17□□□□□ -1.1
USP4-206ENST00000461553 LEPROTL1O95214 131 aa8.17□□□□□ -1.1
USP4-206ENST00000461553 TRGC2P03986 189 aa8.17□□□□□ -1.1
USP4-206ENST00000461553 BOD1L2Q8IYS8 172 aa8.17□□□□□ -1.1
USP4-206ENST00000461553 HIGD2AQ9BW72 106 aa8.17□□□□□ -1.1
USP4-206ENST00000461553 NDUFA12Q9UI09 145 aa8.17□□□□□ -1.1
USP4-206ENST00000461553 MYMXA0A1B0GTQ4 84 aa8.16□□□□□ -1.1
USP4-206ENST00000461553 PRYO14603 147 aa8.16□□□□□ -1.1
USP4-206ENST00000461553 NCR3O14931 201 aa8.16□□□□□ -1.1
USP4-206ENST00000461553 MIR7-3HGQ8N6C7 128 aa8.16□□□□□ -1.1
USP4-206ENST00000461553 MAP1LC3CQ9BXW4 147 aa8.16□□□□□ -1.1
USP4-206ENST00000461553 SERF1AO75920 110 aa8.15□□□□□ -1.1
USP4-206ENST00000461553 PLNP26678 52 aa8.14□□□□□ -1.11
USP4-206ENST00000461553 ZNF706Q9Y5V0 76 aaPredicted RBP8.14□□□□□ -1.11
USP4-206ENST00000461553 HERVK_113P61574 105 aa8.13□□□□□ -1.11
USP4-206ENST00000461553 PLEKHB2Q96CS7 222 aa8.13□□□□□ -1.11
USP4-206ENST00000461553 HSPB8Q9UJY1 196 aa8.13□□□□□ -1.11
USP4-206ENST00000461553 LEPROTO15243 131 aa8.12□□□□□ -1.11
USP4-206ENST00000461553 LINC00310P59036 64 aa8.12□□□□□ -1.11
USP4-206ENST00000461553 TSPEAR-AS2P59090 65 aa8.12□□□□□ -1.11
USP4-206ENST00000461553 S100A12P80511 92 aa8.12□□□□□ -1.11
USP4-206ENST00000461553 SPRR4Q96PI1 79 aa8.11□□□□□ -1.11
USP4-206ENST00000461553 RETNLBQ9BQ08 111 aa8.11□□□□□ -1.11
USP4-206ENST00000461553 ETDCA0A1B0GVM5 59 aa8.1□□□□□ -1.11
USP4-206ENST00000461553 DPM2O94777 84 aa8.1□□□□□ -1.11
USP4-206ENST00000461553 FABP4P15090 132 aa8.1□□□□□ -1.11
USP4-206ENST00000461553 C3orf22Q8N5N4 141 aa8.1□□□□□ -1.11
USP4-206ENST00000461553 LINC00337Q8N6G1 96 aa8.1□□□□□ -1.11
USP4-206ENST00000461553 KCNQ1DNQ9H478 68 aa8.1□□□□□ -1.11
USP4-206ENST00000461553 TRBV10-3A0A0K0K1G6 114 aa8.09□□□□□ -1.11
USP4-206ENST00000461553 J3QQQ9 107 aa8.09□□□□□ -1.11
USP4-206ENST00000461553 IGKCP01834 107 aa8.09□□□□□ -1.11
USP4-206ENST00000461553 LGALS3P17931 250 aaKnown RBP8.09□□□□□ -1.11
USP4-206ENST00000461553 SPRR1AP35321 89 aa8.09□□□□□ -1.11
USP4-206ENST00000461553 NMUP48645 174 aa8.09□□□□□ -1.11
USP4-206ENST00000461553 CTAG1AP78358 180 aa8.09□□□□□ -1.11
USP4-206ENST00000461553 MIEN1Q9BRT3 115 aa8.09□□□□□ -1.11
USP4-206ENST00000461553 MUC2Q02817 5179 aa8.09□□□□□ -1.11
USP4-206ENST00000461553 DAND5Q8N907 189 aa8.08□□□□□ -1.12
USP4-206ENST00000461553 PMCHL2Q9BQD1 86 aa8.08□□□□□ -1.12
USP4-206ENST00000461553 SLC7A5P1Q8MH63 180 aa8.06□□□□□ -1.12
USP4-206ENST00000461553 SPANXB1Q9NS25 103 aaPredicted RBP8.06□□□□□ -1.12
USP4-206ENST00000461553 MUC17Q685J3 4493 aa8.05□□□□□ -1.12
USP4-206ENST00000461553 LOC107984156A0A0G2JMH3 177 aa8.05□□□□□ -1.12
USP4-206ENST00000461553 TRBV10-2A0A0K0K1G8 114 aa8.05□□□□□ -1.12
USP4-206ENST00000461553 COLCA2A8K830 154 aa8.05□□□□□ -1.12
USP4-206ENST00000461553 KRTAP4-16G5E9R7 235 aaPredicted RBP8.05□□□□□ -1.12
USP4-206ENST00000461553 DDTP30046 118 aa8.05□□□□□ -1.12
USP4-206ENST00000461553 SPAG11AQ6PDA7 123 aa8.05□□□□□ -1.12
USP4-206ENST00000461553 ARL17AQ8IVW1 177 aa8.05□□□□□ -1.12
USP4-206ENST00000461553 A0A0U1RQV1 116 aa8.04□□□□□ -1.12
USP4-206ENST00000461553 SMCR5Q8TEV8 140 aa8.04□□□□□ -1.12
USP4-206ENST00000461553 TPRXLQ17RH7 258 aa8.03□□□□□ -1.12
USP4-206ENST00000461553 C4orf48Q5BLP8 95 aa8.03□□□□□ -1.12
USP4-206ENST00000461553 S100A7L2Q5SY68 101 aa8.03□□□□□ -1.12
USP4-206ENST00000461553 PPDPFQ9H3Y8 114 aa8.03□□□□□ -1.12
USP4-206ENST00000461553 IGLV7-46A0A075B6I9 117 aa8.02□□□□□ -1.13
USP4-206ENST00000461553 NDUFC2O95298 119 aa8.02□□□□□ -1.13
USP4-206ENST00000461553 CDIP1Q9H305 208 aa8.02□□□□□ -1.13
USP4-206ENST00000461553 B5MCH6 92 aa8.01□□□□□ -1.13
USP4-206ENST00000461553 Q8NBF4 154 aa8.01□□□□□ -1.13
USP4-206ENST00000461553 E9PLD3 99 aa8□□□□□ -1.13
USP4-206ENST00000461553 NPC2P61916 151 aa8□□□□□ -1.13
USP4-206ENST00000461553 LINC00483Q53H64 154 aa8□□□□□ -1.13
USP4-206ENST00000461553 GAGE2AQ6NT46 116 aa8□□□□□ -1.13
USP4-206ENST00000461553 Q6ZRX8 168 aa8□□□□□ -1.13
USP4-206ENST00000461553 TRAV23DV6A0A075B6W5 121 aa7.99□□□□□ -1.13
USP4-206ENST00000461553 A0A0J9YXY3 114 aa7.99□□□□□ -1.13
USP4-206ENST00000461553 SYS1-DBNDD2H3BUS1 97 aa7.98□□□□□ -1.13
USP4-206ENST00000461553 IGLV6-57P01721 117 aa7.98□□□□□ -1.13
USP4-206ENST00000461553 FP248Q71RG6 208 aaPredicted RBP7.98□□□□□ -1.13
USP4-206ENST00000461553 IGLV9-49A0A0B4J1Y8 123 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BKO60814 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BJP06899 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BOP23527 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BBP33778 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BDP58876 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 HIST1H2BCP62807 126 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 MOBPQ13875 183 aa7.97□□□□□ -1.13
USP4-206ENST00000461553 JOSD1Q15040 202 aaPredicted RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms