RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 Q8N814 137 aa5.06□□□□□ -1.6
SYNE1-213ENST00000448038 WWC2-AS2Q96NR7 200 aa5.06□□□□□ -1.6
SYNE1-213ENST00000448038 NBDYA0A0U1RRE5 68 aa5.06□□□□□ -1.6
SYNE1-213ENST00000448038 NDUFV3P56181 108 aaKnown RBP5.05□□□□□ -1.6
SYNE1-213ENST00000448038 SCXQ7RTU7 201 aa5.05□□□□□ -1.6
SYNE1-213ENST00000448038 C6orf48Q9UBA6 75 aa5.05□□□□□ -1.6
SYNE1-213ENST00000448038 FRYQ5TBA9 3013 aa5.05□□□□□ -1.6
SYNE1-213ENST00000448038 LINC00337Q8N6G1 96 aa5.05□□□□□ -1.6
SYNE1-213ENST00000448038 A0A087WYN8 130 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 C10orf25Q5T742 122 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 HRCT1Q6UXD1 115 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 BOD1L1Q8NFC6 3051 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 ATOX1O00244 68 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 PRYO14603 147 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 DNAH10OSP0CZ25 163 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 C1orf137Q5JT78 98 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 UPK3BQ9BT76 320 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 C22orf24Q9Y442 160 aa5.04□□□□□ -1.6
SYNE1-213ENST00000448038 LINC00612Q8N6U2 182 aa5.03□□□□□ -1.6
SYNE1-213ENST00000448038 TM2D3Q9BRN9 247 aa5.03□□□□□ -1.6
SYNE1-213ENST00000448038 BAHCC1Q9P281 2608 aa5.03□□□□□ -1.6
SYNE1-213ENST00000448038 MP68P56378 58 aa5.03□□□□□ -1.6
SYNE1-213ENST00000448038 SDIM1Q6ZPB5 146 aa5.03□□□□□ -1.6
SYNE1-213ENST00000448038 SPINK6Q6UWN8 80 aa5.02□□□□□ -1.61
SYNE1-213ENST00000448038 SS18L2Q9UHA2 77 aa5.02□□□□□ -1.61
SYNE1-213ENST00000448038 FLNCQ14315 2725 aa5.02□□□□□ -1.61
SYNE1-213ENST00000448038 ATMQ13315 3056 aa5.02□□□□□ -1.61
SYNE1-213ENST00000448038 TEX15Q9BXT5 2789 aa5.01□□□□□ -1.61
SYNE1-213ENST00000448038 DMXL1Q9Y485 3027 aa5.01□□□□□ -1.61
SYNE1-213ENST00000448038 PRLHP81277 87 aa5.01□□□□□ -1.61
SYNE1-213ENST00000448038 ATP5EP2Q5VTU8 51 aa5.01□□□□□ -1.61
SYNE1-213ENST00000448038 MT-ATP8P03928 68 aa5□□□□□ -1.61
SYNE1-213ENST00000448038 LINC00575Q6W349 94 aa5□□□□□ -1.61
SYNE1-213ENST00000448038 SOSTDC1Q6X4U4 206 aa5□□□□□ -1.61
SYNE1-213ENST00000448038 GVQW2A0A096LPI5 108 aaPredicted RBP5□□□□□ -1.61
SYNE1-213ENST00000448038 LINC00167Q96N53 147 aa5□□□□□ -1.61
SYNE1-213ENST00000448038 FREM2Q5SZK8 3169 aa4.99□□□□□ -1.61
SYNE1-213ENST00000448038 SMIM20Q8N5G0 67 aa4.99□□□□□ -1.61
SYNE1-213ENST00000448038 K7ERS5 55 aa4.99□□□□□ -1.61
SYNE1-213ENST00000448038 Q9BRP9 147 aa4.99□□□□□ -1.61
SYNE1-213ENST00000448038 COL12A1Q99715 3063 aa4.98□□□□□ -1.61
SYNE1-213ENST00000448038 RTL8CO15255 209 aa4.98□□□□□ -1.61
SYNE1-213ENST00000448038 CIRBP-AS1Q8TBR5 109 aa4.98□□□□□ -1.61
SYNE1-213ENST00000448038 SPEGQ15772 3267 aa4.98□□□□□ -1.61
SYNE1-213ENST00000448038 COL6A5A8TX70 2615 aa4.98□□□□□ -1.61
SYNE1-213ENST00000448038 SMCR5Q8TEV8 140 aa4.98□□□□□ -1.61
SYNE1-213ENST00000448038 PRR34Q9NV39 138 aa4.97□□□□□ -1.61
SYNE1-213ENST00000448038 ADGRG4Q8IZF6 3080 aa4.97□□□□□ -1.61
SYNE1-213ENST00000448038 IGKV4-1P06312 121 aa4.97□□□□□ -1.61
SYNE1-213ENST00000448038 B5MCH6 92 aa4.97□□□□□ -1.61
SYNE1-213ENST00000448038 FAM19A3Q7Z5A8 133 aa4.97□□□□□ -1.61
SYNE1-213ENST00000448038 C16orf90A8MZG2 172 aa4.96□□□□□ -1.61
SYNE1-213ENST00000448038 WIPF1O43516 503 aa4.96□□□□□ -1.61
SYNE1-213ENST00000448038 Q6JHZ5 121 aa4.96□□□□□ -1.62
SYNE1-213ENST00000448038 PHF5AQ7RTV0 110 aaKnown RBP4.96□□□□□ -1.62
SYNE1-213ENST00000448038 ZNF575Q86XF7 245 aa4.96□□□□□ -1.62
SYNE1-213ENST00000448038 STAB1Q9NY15 2570 aa4.95□□□□□ -1.62
SYNE1-213ENST00000448038 Q6ZRP5 223 aa4.95□□□□□ -1.62
SYNE1-213ENST00000448038 SETXQ7Z333 2677 aaKnown RBP4.95□□□□□ -1.62
SYNE1-213ENST00000448038 WFDC13Q8IUB5 93 aa4.95□□□□□ -1.62
SYNE1-213ENST00000448038 CHTF8P0CG12 524 aa4.95□□□□□ -1.62
SYNE1-213ENST00000448038 LITAFQ99732 161 aa4.94□□□□□ -1.62
SYNE1-213ENST00000448038 GCN1Q92616 2671 aaKnown RBP4.94□□□□□ -1.62
SYNE1-213ENST00000448038 FAM240AA0A1B0GVK7 77 aa4.93□□□□□ -1.62
SYNE1-213ENST00000448038 APLNQ9ULZ1 77 aa4.93□□□□□ -1.62
SYNE1-213ENST00000448038 A0A087WSZ3 146 aa4.93□□□□□ -1.62
SYNE1-213ENST00000448038 SEC61GP60059 68 aa4.93□□□□□ -1.62
SYNE1-213ENST00000448038 C15orf56Q8N910 161 aa4.93□□□□□ -1.62
SYNE1-213ENST00000448038 CHKB-CPT1BH3BT56 60 aa4.92□□□□□ -1.62
SYNE1-213ENST00000448038 KIAA0087Q14695 138 aa4.92□□□□□ -1.62
SYNE1-213ENST00000448038 IMUPQ9GZP8 106 aa4.92□□□□□ -1.62
SYNE1-213ENST00000448038 XGP55808 180 aa4.92□□□□□ -1.62
SYNE1-213ENST00000448038 ELOF1P60002 83 aaKnown RBP4.92□□□□□ -1.62
SYNE1-213ENST00000448038 FAM218AQ96MZ4 157 aa4.92□□□□□ -1.62
SYNE1-213ENST00000448038 TRBV7-6A0A0J9YX20 115 aa4.92□□□□□ -1.62
SYNE1-213ENST00000448038 C20orf197Q8N268 126 aa4.92□□□□□ -1.62
SYNE1-213ENST00000448038 VPREB1P12018 145 aa4.92□□□□□ -1.62
SYNE1-213ENST00000448038 FAM168BA1KXE4 195 aa4.91□□□□□ -1.62
SYNE1-213ENST00000448038 Q6ZRX8 168 aa4.91□□□□□ -1.62
SYNE1-213ENST00000448038 BRK1Q8WUW1 75 aa4.91□□□□□ -1.62
SYNE1-213ENST00000448038 LRBAP50851 2863 aa4.9□□□□□ -1.62
SYNE1-213ENST00000448038 USP34Q70CQ2 3546 aa4.9□□□□□ -1.62
SYNE1-213ENST00000448038 SERTAD4-AS1Q5TG53 156 aa4.9□□□□□ -1.63
SYNE1-213ENST00000448038 UBR5O95071 2799 aaPredicted RBP4.9□□□□□ -1.63
SYNE1-213ENST00000448038 EPM2AB3EWF7 344 aa4.89□□□□□ -1.63
SYNE1-213ENST00000448038 NOTCH1P46531 2555 aa4.89□□□□□ -1.63
SYNE1-213ENST00000448038 A0A087WTM6 91 aa4.89□□□□□ -1.63
SYNE1-213ENST00000448038 UQCRQO14949 82 aa4.89□□□□□ -1.63
SYNE1-213ENST00000448038 EIF4EBP3O60516 100 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-213ENST00000448038 C3orf22Q8N5N4 141 aa4.89□□□□□ -1.63
SYNE1-213ENST00000448038 TACC2O95359 2948 aa4.89□□□□□ -1.63
SYNE1-213ENST00000448038 NBEAQ8NFP9 2946 aa4.89□□□□□ -1.63
SYNE1-213ENST00000448038 IGLV6-57P01721 117 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 DEFB116Q30KQ4 102 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 UTP20O75691 2785 aaKnown RBP4.88□□□□□ -1.63
SYNE1-213ENST00000448038 ITPR2Q14571 2701 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 ZZEF1O43149 2961 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 KALRNO60229 2985 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 IGHV6-1A0A0B4J1U7 121 aa4.88□□□□□ -1.63
SYNE1-213ENST00000448038 MOBPQ13875 183 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms