RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 Q6ZQT0 140 aa13.93□□□□□ -0.18
SHOX2-203ENST00000441443 LINC01547P58512 204 aaPredicted RBP13.91□□□□□ -0.18
SHOX2-203ENST00000441443 SPATA3Q8NHX4 192 aa13.91□□□□□ -0.18
SHOX2-203ENST00000441443 TENM1Q9UKZ4 2725 aa13.91□□□□□ -0.18
SHOX2-203ENST00000441443 IGLV10-54A0A075B6I4 117 aa13.9□□□□□ -0.18
SHOX2-203ENST00000441443 TRAV7A0A075B6U4 112 aa13.9□□□□□ -0.18
SHOX2-203ENST00000441443 LINC00575Q6W349 94 aa13.9□□□□□ -0.18
SHOX2-203ENST00000441443 LINC00269Q8N2A0 174 aa13.9□□□□□ -0.18
SHOX2-203ENST00000441443 RMI2Q96E14 147 aa13.9□□□□□ -0.18
SHOX2-203ENST00000441443 ANK3Q12955 4377 aaKnown RBP13.89□□□□□ -0.19
SHOX2-203ENST00000441443 GYPEP15421 78 aa13.89□□□□□ -0.19
SHOX2-203ENST00000441443 FLNBO75369 2602 aaKnown RBP13.89□□□□□ -0.19
SHOX2-203ENST00000441443 Q6ZVQ6 151 aa13.88□□□□□ -0.19
SHOX2-203ENST00000441443 KIAA0087Q14695 138 aa13.88□□□□□ -0.19
SHOX2-203ENST00000441443 SERP1Q9Y6X1 66 aa13.87□□□□□ -0.19
SHOX2-203ENST00000441443 CSNK1G2-AS1Q8NCQ2 148 aa13.87□□□□□ -0.19
SHOX2-203ENST00000441443 KMT2BQ9UMN6 2715 aaPredicted RBP13.86□□□□□ -0.19
SHOX2-203ENST00000441443 Q8N3U1 123 aa13.85□□□□□ -0.19
SHOX2-203ENST00000441443 NSD1Q96L73 2696 aaPredicted RBP13.85□□□□□ -0.19
SHOX2-203ENST00000441443 ZNF561-AS1K7EIQ3 104 aa13.85□□□□□ -0.19
SHOX2-203ENST00000441443 LINC00482Q8N8I6 264 aa13.85□□□□□ -0.19
SHOX2-203ENST00000441443 LINC00336Q6ZUF6 198 aa13.84□□□□□ -0.19
SHOX2-203ENST00000441443 SCXQ7RTU7 201 aa13.84□□□□□ -0.19
SHOX2-203ENST00000441443 F8WEM9 126 aa13.83□□□□□ -0.19
SHOX2-203ENST00000441443 EPM2AB3EWF7 344 aa13.82□□□□□ -0.2
SHOX2-203ENST00000441443 Q6ZQY7 126 aa13.82□□□□□ -0.2
SHOX2-203ENST00000441443 LOC110117498A0A087WWA1 95 aa13.82□□□□□ -0.2
SHOX2-203ENST00000441443 A0A1B0GUV1 79 aa13.82□□□□□ -0.2
SHOX2-203ENST00000441443 IGLV1-51P01701 117 aa13.82□□□□□ -0.2
SHOX2-203ENST00000441443 KLKP1Q107X0 134 aa13.82□□□□□ -0.2
SHOX2-203ENST00000441443 COX17Q14061 63 aa13.82□□□□□ -0.2
SHOX2-203ENST00000441443 C6orf223Q8N319 242 aa13.82□□□□□ -0.2
SHOX2-203ENST00000441443 CHCHD10Q8WYQ3 142 aaPredicted RBP13.81□□□□□ -0.2
SHOX2-203ENST00000441443 HIVEP1P15822 2718 aa13.8□□□□□ -0.2
SHOX2-203ENST00000441443 C19orf73Q9NVV2 129 aa13.8□□□□□ -0.2
SHOX2-203ENST00000441443 C10orf25Q5T742 122 aa13.79□□□□□ -0.2
SHOX2-203ENST00000441443 TM2D3Q9BRN9 247 aa13.79□□□□□ -0.2
SHOX2-203ENST00000441443 CD164L2Q6UWJ8 174 aa13.79□□□□□ -0.2
SHOX2-203ENST00000441443 C16orf95Q9H693 158 aa13.79□□□□□ -0.2
SHOX2-203ENST00000441443 ANGP03950 147 aaKnown RBP13.77□□□□□ -0.21
SHOX2-203ENST00000441443 KRTAP10-3P60369 221 aa13.77□□□□□ -0.21
SHOX2-203ENST00000441443 UNQ6190/PRO20217Q6UXQ8 127 aa13.77□□□□□ -0.21
SHOX2-203ENST00000441443 FP248Q71RG6 208 aaPredicted RBP13.77□□□□□ -0.21
SHOX2-203ENST00000441443 MRAPQ8TCY5 172 aa13.77□□□□□ -0.21
SHOX2-203ENST00000441443 BCE1O60756 84 aa13.77□□□□□ -0.21
SHOX2-203ENST00000441443 TEP1Q99973 2627 aaKnown RBP13.76□□□□□ -0.21
SHOX2-203ENST00000441443 IGHV4-28A0A0C4DH34 117 aa13.75□□□□□ -0.21
SHOX2-203ENST00000441443 LINC00474Q9P2X8 69 aa13.74□□□□□ -0.21
SHOX2-203ENST00000441443 MUC7Q8TAX7 377 aa13.74□□□□□ -0.21
SHOX2-203ENST00000441443 REG3AQ06141 175 aa13.73□□□□□ -0.21
SHOX2-203ENST00000441443 INAFM1C9JVW0 142 aa13.73□□□□□ -0.21
SHOX2-203ENST00000441443 DEFB4AO15263 64 aa13.73□□□□□ -0.21
SHOX2-203ENST00000441443 CXCL6P80162 114 aa13.73□□□□□ -0.21
SHOX2-203ENST00000441443 PRO0628Q9UI54 55 aa13.73□□□□□ -0.21
SHOX2-203ENST00000441443 CMC4P56277 68 aaPredicted RBP13.72□□□□□ -0.21
SHOX2-203ENST00000441443 TRRAPQ9Y4A5 3859 aa13.71□□□□□ -0.22
SHOX2-203ENST00000441443 SMIM26A0A096LP01 95 aa13.71□□□□□ -0.22
SHOX2-203ENST00000441443 PRO0255Q9UI72 69 aa13.7□□□□□ -0.22
SHOX2-203ENST00000441443 IGLV6-57P01721 117 aa13.7□□□□□ -0.22
SHOX2-203ENST00000441443 C9orf66Q5T8R8 295 aa13.69□□□□□ -0.22
SHOX2-203ENST00000441443 TRBV7-6A0A0J9YX20 115 aa13.69□□□□□ -0.22
SHOX2-203ENST00000441443 SPAG11BQ08648 103 aa13.69□□□□□ -0.22
SHOX2-203ENST00000441443 F8P00451 2351 aa13.68□□□□□ -0.22
SHOX2-203ENST00000441443 C1orf43Q9BWL3 253 aa13.68□□□□□ -0.22
SHOX2-203ENST00000441443 TRBV7-4A0A0J9YYF1 115 aa13.68□□□□□ -0.22
SHOX2-203ENST00000441443 CYSRT1A8MQ03 144 aa13.67□□□□□ -0.22
SHOX2-203ENST00000441443 XAGE1AQ9HD64 81 aa13.67□□□□□ -0.22
SHOX2-203ENST00000441443 Q8N9L7 120 aa13.67□□□□□ -0.22
SHOX2-203ENST00000441443 MIFP14174 115 aa13.66□□□□□ -0.22
SHOX2-203ENST00000441443 PDE6GP18545 87 aa13.66□□□□□ -0.22
SHOX2-203ENST00000441443 NREPQ16612 68 aa13.65□□□□□ -0.22
SHOX2-203ENST00000441443 LINC00612Q8N6U2 182 aa13.64□□□□□ -0.23
SHOX2-203ENST00000441443 PKIGQ9Y2B9 76 aa13.64□□□□□ -0.23
SHOX2-203ENST00000441443 DIRC1Q969H9 104 aa13.64□□□□□ -0.23
SHOX2-203ENST00000441443 BPY2O14599 106 aa13.63□□□□□ -0.23
SHOX2-203ENST00000441443 DEFB135Q30KP9 77 aa13.63□□□□□ -0.23
SHOX2-203ENST00000441443 TMEM254Q8TBM7 123 aa13.62□□□□□ -0.23
SHOX2-203ENST00000441443 NDUFC1O43677 76 aa13.6□□□□□ -0.23
SHOX2-203ENST00000441443 X6R8D5 127 aa13.6□□□□□ -0.23
SHOX2-203ENST00000441443 ZNF73O43830 326 aaPredicted RBP13.59□□□□□ -0.23
SHOX2-203ENST00000441443 STAB1Q9NY15 2570 aa13.59□□□□□ -0.23
SHOX2-203ENST00000441443 FAM229BQ4G0N7 80 aa13.59□□□□□ -0.23
SHOX2-203ENST00000441443 COX7BP24311 80 aa13.58□□□□□ -0.23
SHOX2-203ENST00000441443 A0A0J9YWU9 116 aa13.58□□□□□ -0.24
SHOX2-203ENST00000441443 IGHV4-30-4P0DP06 118 aa13.58□□□□□ -0.24
SHOX2-203ENST00000441443 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.58□□□□□ -0.24
SHOX2-203ENST00000441443 MPLKIPQ8TAP9 179 aa13.58□□□□□ -0.24
SHOX2-203ENST00000441443 BRK1Q8WUW1 75 aa13.57□□□□□ -0.24
SHOX2-203ENST00000441443 HTN3P15516 51 aa13.56□□□□□ -0.24
SHOX2-203ENST00000441443 MAST4O15021 2626 aa13.56□□□□□ -0.24
SHOX2-203ENST00000441443 C6orf48Q9UBA6 75 aa13.55□□□□□ -0.24
SHOX2-203ENST00000441443 KLK12Q9UKR0 248 aa13.55□□□□□ -0.24
SHOX2-203ENST00000441443 H3BQ85 93 aa13.54□□□□□ -0.24
SHOX2-203ENST00000441443 ELOF1P60002 83 aaKnown RBP13.53□□□□□ -0.24
SHOX2-203ENST00000441443 A0A0U1RQV1 116 aa13.52□□□□□ -0.24
SHOX2-203ENST00000441443 NOTCH1P46531 2555 aa13.52□□□□□ -0.25
SHOX2-203ENST00000441443 DAD1P61803 113 aa13.52□□□□□ -0.25
SHOX2-203ENST00000441443 ATP5EP56381 51 aaPredicted RBP13.51□□□□□ -0.25
SHOX2-203ENST00000441443 IGKV4-1P06312 121 aa13.51□□□□□ -0.25
SHOX2-203ENST00000441443 C3orf84H3BNL1 204 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms