RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 LRCOL1A6NCL2 159 aa5.1□□□□□ -1.59
VPS53-204ENST00000437048 STAB1Q9NY15 2570 aa5.09□□□□□ -1.59
VPS53-204ENST00000437048 PRR9Q5T870 116 aa5.09□□□□□ -1.59
VPS53-204ENST00000437048 FLNBO75369 2602 aaKnown RBP5.09□□□□□ -1.59
VPS53-204ENST00000437048 C9orf116Q5BN46 136 aaPredicted RBP5.09□□□□□ -1.59
VPS53-204ENST00000437048 LYPD5Q6UWN5 251 aa5.09□□□□□ -1.6
VPS53-204ENST00000437048 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.09□□□□□ -1.6
VPS53-204ENST00000437048 EDN2P20800 178 aa5.08□□□□□ -1.6
VPS53-204ENST00000437048 FAM19A4Q96LR4 140 aa5.08□□□□□ -1.6
VPS53-204ENST00000437048 UNQ6190/PRO20217Q6UXQ8 127 aa5.08□□□□□ -1.6
VPS53-204ENST00000437048 MSMPQ1L6U9 139 aa5.08□□□□□ -1.6
VPS53-204ENST00000437048 SMCPP49901 116 aaPredicted RBP5.08□□□□□ -1.6
VPS53-204ENST00000437048 PRR4Q16378 134 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 SRCAPQ6ZRS2 3230 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 CFAP46Q8IYW2 2715 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 BBC3Q96PG8 261 aaPredicted RBP5.07□□□□□ -1.6
VPS53-204ENST00000437048 GAS8-AS1O95177 125 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 GRNP28799 593 aaKnown RBP5.07□□□□□ -1.6
VPS53-204ENST00000437048 BAHCC1Q9P281 2608 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 DEFB4AO15263 64 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 DMBT1Q9UGM3 2413 aaPredicted RBP5.07□□□□□ -1.6
VPS53-204ENST00000437048 IGLV4-60A0A075B6I1 120 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 IGHV4-31P0DP07 118 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 Q6ZRP5 223 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 ASB16-AS1Q495Z4 193 aa5.07□□□□□ -1.6
VPS53-204ENST00000437048 Q1T7F1 81 aa5.06□□□□□ -1.6
VPS53-204ENST00000437048 LINC01556Q5JQF7 62 aa5.06□□□□□ -1.6
VPS53-204ENST00000437048 Q6ZRX8 168 aa5.06□□□□□ -1.6
VPS53-204ENST00000437048 IGHV6-1A0A0B4J1U7 121 aa5.06□□□□□ -1.6
VPS53-204ENST00000437048 C16orf95Q9H693 158 aa5.06□□□□□ -1.6
VPS53-204ENST00000437048 A8MWP4 228 aa5.06□□□□□ -1.6
VPS53-204ENST00000437048 FHL2Q14192 279 aa5.06□□□□□ -1.6
VPS53-204ENST00000437048 C4orf26Q17RF5 130 aa5.06□□□□□ -1.6
VPS53-204ENST00000437048 IGLV6-57P01721 117 aa5.05□□□□□ -1.6
VPS53-204ENST00000437048 SPINK6Q6UWN8 80 aa5.05□□□□□ -1.6
VPS53-204ENST00000437048 CR1P17927 2039 aa5.05□□□□□ -1.6
VPS53-204ENST00000437048 C10orf142B7Z368 130 aa5.05□□□□□ -1.6
VPS53-204ENST00000437048 CRIPTQ9P021 101 aa5.05□□□□□ -1.6
VPS53-204ENST00000437048 ODF3L2Q3SX64 289 aa5.04□□□□□ -1.6
VPS53-204ENST00000437048 CDC42SE1Q9NRR8 79 aa5.04□□□□□ -1.6
VPS53-204ENST00000437048 MDFIQ99750 246 aa5.04□□□□□ -1.6
VPS53-204ENST00000437048 SMIM29Q86T20 159 aa5.03□□□□□ -1.6
VPS53-204ENST00000437048 Q8NA96 180 aa5.03□□□□□ -1.6
VPS53-204ENST00000437048 C1orf229Q6ZS94 237 aaPredicted RBP5.03□□□□□ -1.6
VPS53-204ENST00000437048 NBEAL1Q6ZS30 2694 aa5.02□□□□□ -1.61
VPS53-204ENST00000437048 COX6A2Q02221 97 aa5.02□□□□□ -1.61
VPS53-204ENST00000437048 H7BZZ5 65 aa5.02□□□□□ -1.61
VPS53-204ENST00000437048 A8MUN3 132 aa5.02□□□□□ -1.61
VPS53-204ENST00000437048 LINC00315P59091 139 aa5.01□□□□□ -1.61
VPS53-204ENST00000437048 AVPP01185 164 aa5.01□□□□□ -1.61
VPS53-204ENST00000437048 IGLV9-49A0A0B4J1Y8 123 aa5.01□□□□□ -1.61
VPS53-204ENST00000437048 FHL3Q13643 280 aa5□□□□□ -1.61
VPS53-204ENST00000437048 LINC00167Q96N53 147 aa5□□□□□ -1.61
VPS53-204ENST00000437048 A0A096LNI7 61 aa5□□□□□ -1.61
VPS53-204ENST00000437048 TM2D3Q9BRN9 247 aa5□□□□□ -1.61
VPS53-204ENST00000437048 LINC01006Q8NI28 216 aa5□□□□□ -1.61
VPS53-204ENST00000437048 COA5Q86WW8 74 aa5□□□□□ -1.61
VPS53-204ENST00000437048 PROK1P58294 105 aa4.99□□□□□ -1.61
VPS53-204ENST00000437048 COL4A2P08572 1712 aa4.99□□□□□ -1.61
VPS53-204ENST00000437048 PLA2G2DQ9UNK4 145 aa4.99□□□□□ -1.61
VPS53-204ENST00000437048 EIF4EBP3O60516 100 aaPredicted RBP4.99□□□□□ -1.61
VPS53-204ENST00000437048 MIR22HGQ0VDD5 57 aa4.99□□□□□ -1.61
VPS53-204ENST00000437048 NOTCH1P46531 2555 aa4.98□□□□□ -1.61
VPS53-204ENST00000437048 STAB2Q8WWQ8 2551 aa4.98□□□□□ -1.61
VPS53-204ENST00000437048 KIAA0087Q14695 138 aa4.98□□□□□ -1.61
VPS53-204ENST00000437048 OXLD1Q5BKU9 147 aa4.98□□□□□ -1.61
VPS53-204ENST00000437048 KCNQ1DNQ9H478 68 aa4.98□□□□□ -1.61
VPS53-204ENST00000437048 SPINT4Q6UDR6 99 aa4.98□□□□□ -1.61
VPS53-204ENST00000437048 PCOTHQ58A44 107 aa4.97□□□□□ -1.61
VPS53-204ENST00000437048 ITPR3Q14573 2671 aa4.97□□□□□ -1.61
VPS53-204ENST00000437048 C16orf90A8MZG2 172 aa4.97□□□□□ -1.61
VPS53-204ENST00000437048 LINC00313P59037 77 aa4.97□□□□□ -1.61
VPS53-204ENST00000437048 LUZP6Q538Z0 58 aa4.97□□□□□ -1.61
VPS53-204ENST00000437048 LINC00336Q6ZUF6 198 aa4.96□□□□□ -1.61
VPS53-204ENST00000437048 EPM2AB3EWF7 344 aa4.96□□□□□ -1.62
VPS53-204ENST00000437048 CIRBP-AS1Q8TBR5 109 aa4.96□□□□□ -1.62
VPS53-204ENST00000437048 LITAFQ99732 161 aa4.96□□□□□ -1.62
VPS53-204ENST00000437048 MRPL34Q9BQ48 92 aaKnown RBP4.96□□□□□ -1.62
VPS53-204ENST00000437048 LINC00476Q8WZB0 136 aa4.95□□□□□ -1.62
VPS53-204ENST00000437048 A8MTW9 85 aa4.95□□□□□ -1.62
VPS53-204ENST00000437048 C22orf24Q9Y442 160 aa4.95□□□□□ -1.62
VPS53-204ENST00000437048 SSBP3-AS1Q7Z2R9 100 aa4.95□□□□□ -1.62
VPS53-204ENST00000437048 SMCR5Q8TEV8 140 aa4.95□□□□□ -1.62
VPS53-204ENST00000437048 Q75L30 129 aa4.95□□□□□ -1.62
VPS53-204ENST00000437048 OBSCN-AS1Q96MR7 158 aa4.95□□□□□ -1.62
VPS53-204ENST00000437048 DMAC1Q96GE9 116 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 CHD6Q8TD26 2715 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 Q6ZRU5 148 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 IGKV2D-30A0A075B6S6 120 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 IGKV2-30P06310 120 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 TNP2Q05952 138 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 C10orf99Q6UWK7 81 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 LINC00528Q8N1L1 170 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 CDSNQ15517 529 aa4.93□□□□□ -1.62
VPS53-204ENST00000437048 IGLV5-52A0A0A0MRZ9 124 aa4.92□□□□□ -1.62
VPS53-204ENST00000437048 TLX1NBP0CAT3 122 aa4.92□□□□□ -1.62
VPS53-204ENST00000437048 PRR3P79522 188 aaKnown RBP4.92□□□□□ -1.62
VPS53-204ENST00000437048 FAM218AQ96MZ4 157 aa4.92□□□□□ -1.62
VPS53-204ENST00000437048 CENPFP49454 3210 aa4.92□□□□□ -1.62
VPS53-204ENST00000437048 C19orf84I3L1E1 186 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms