RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 RPL18AQ02543 176 aaKnown RBP9.24□□□□□ -0.93
COL6A3-207ENST00000433762 C6orf99Q4VX62 202 aa9.24□□□□□ -0.93
COL6A3-207ENST00000433762 LYPD5Q6UWN5 251 aa9.24□□□□□ -0.93
COL6A3-207ENST00000433762 SPATA3Q8NHX4 192 aa9.24□□□□□ -0.93
COL6A3-207ENST00000433762 TRBV10-3A0A0K0K1G6 114 aa9.23□□□□□ -0.93
COL6A3-207ENST00000433762 DEFB4AO15263 64 aa9.23□□□□□ -0.93
COL6A3-207ENST00000433762 PRR3P79522 188 aaKnown RBP9.23□□□□□ -0.93
COL6A3-207ENST00000433762 Q8N3U1 123 aa9.23□□□□□ -0.93
COL6A3-207ENST00000433762 ZNF561-AS1K7EIQ3 104 aa9.23□□□□□ -0.93
COL6A3-207ENST00000433762 C9orf116Q5BN46 136 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-207ENST00000433762 LOC110117498A0A087WWA1 95 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 GHRHP01286 108 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 UNQ6190/PRO20217Q6UXQ8 127 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 TRBV7-6A0A0J9YX20 115 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 hADV29S1A0JD25 119 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 CRYGAP11844 174 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 C9orf153Q5TBE3 101 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 ENHOQ6UWT2 76 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 C2orf48Q96LS8 159 aa9.22□□□□□ -0.93
COL6A3-207ENST00000433762 PDE6GP18545 87 aa9.21□□□□□ -0.93
COL6A3-207ENST00000433762 Q8NDZ9 215 aa9.21□□□□□ -0.93
COL6A3-207ENST00000433762 C10orf25Q5T742 122 aa9.21□□□□□ -0.94
COL6A3-207ENST00000433762 C6orf223Q8N319 242 aa9.21□□□□□ -0.94
COL6A3-207ENST00000433762 KLK12Q9UKR0 248 aa9.21□□□□□ -0.94
COL6A3-207ENST00000433762 F8WDY8 70 aa9.2□□□□□ -0.94
COL6A3-207ENST00000433762 TEP1Q99973 2627 aaKnown RBP9.2□□□□□ -0.94
COL6A3-207ENST00000433762 SVIPQ8NHG7 77 aa9.19□□□□□ -0.94
COL6A3-207ENST00000433762 RBM3P98179 157 aaKnown RBP9.18□□□□□ -0.94
COL6A3-207ENST00000433762 IGKV3D-7A0A0C4DH55 119 aa9.17□□□□□ -0.94
COL6A3-207ENST00000433762 SERP2Q8N6R1 65 aa9.17□□□□□ -0.94
COL6A3-207ENST00000433762 UBL5Q9BZL1 73 aa9.17□□□□□ -0.94
COL6A3-207ENST00000433762 C6orf48Q9UBA6 75 aa9.17□□□□□ -0.94
COL6A3-207ENST00000433762 MAST4O15021 2626 aa9.17□□□□□ -0.94
COL6A3-207ENST00000433762 Q6ZQT0 140 aa9.17□□□□□ -0.94
COL6A3-207ENST00000433762 HTN3P15516 51 aa9.16□□□□□ -0.94
COL6A3-207ENST00000433762 DIRC1Q969H9 104 aa9.16□□□□□ -0.94
COL6A3-207ENST00000433762 EGFEM1PQ0D2K5 195 aa9.16□□□□□ -0.94
COL6A3-207ENST00000433762 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-207ENST00000433762 TRAV23DV6A0A075B6W5 121 aa9.15□□□□□ -0.94
COL6A3-207ENST00000433762 BCE1O60756 84 aa9.15□□□□□ -0.94
COL6A3-207ENST00000433762 USP17L23D6RBM5 183 aa9.15□□□□□ -0.95
COL6A3-207ENST00000433762 KRTAP26-1Q6PEX3 210 aa9.14□□□□□ -0.95
COL6A3-207ENST00000433762 ELOF1P60002 83 aaKnown RBP9.13□□□□□ -0.95
COL6A3-207ENST00000433762 KPRPQ5T749 579 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-207ENST00000433762 ZNF73O43830 326 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-207ENST00000433762 COX7BP24311 80 aa9.12□□□□□ -0.95
COL6A3-207ENST00000433762 DSCR8Q96T75 97 aa9.12□□□□□ -0.95
COL6A3-207ENST00000433762 LAMTOR3Q9UHA4 124 aa9.12□□□□□ -0.95
COL6A3-207ENST00000433762 M0R378 163 aa9.11□□□□□ -0.95
COL6A3-207ENST00000433762 VPREB1P12018 145 aa9.11□□□□□ -0.95
COL6A3-207ENST00000433762 KRTAP24-1Q3LI83 254 aa9.11□□□□□ -0.95
COL6A3-207ENST00000433762 Q6ZQY7 126 aa9.1□□□□□ -0.95
COL6A3-207ENST00000433762 SMIM20Q8N5G0 67 aa9.1□□□□□ -0.95
COL6A3-207ENST00000433762 CAMK2N2Q96S95 79 aa9.1□□□□□ -0.95
COL6A3-207ENST00000433762 UPK3BQ9BT76 320 aa9.1□□□□□ -0.95
COL6A3-207ENST00000433762 NBEAL2Q6ZNJ1 2754 aa9.1□□□□□ -0.95
COL6A3-207ENST00000433762 VWFP04275 2813 aa9.09□□□□□ -0.95
COL6A3-207ENST00000433762 A0A087WVE0 104 aa9.09□□□□□ -0.95
COL6A3-207ENST00000433762 NDUFC2-KCTD14E9PQ53 114 aa9.09□□□□□ -0.95
COL6A3-207ENST00000433762 WFDC10BQ8IUB3 73 aa9.09□□□□□ -0.95
COL6A3-207ENST00000433762 TRBV7-4A0A0J9YYF1 115 aa9.08□□□□□ -0.96
COL6A3-207ENST00000433762 LINC01556Q5JQF7 62 aa9.08□□□□□ -0.96
COL6A3-207ENST00000433762 TMEM258P61165 79 aa9.08□□□□□ -0.96
COL6A3-207ENST00000433762 CXCL6P80162 114 aa9.08□□□□□ -0.96
COL6A3-207ENST00000433762 C15orf56Q8N910 161 aa9.08□□□□□ -0.96
COL6A3-207ENST00000433762 RPS28P62857 69 aaKnown RBP9.07□□□□□ -0.96
COL6A3-207ENST00000433762 XAGE1AQ9HD64 81 aa9.07□□□□□ -0.96
COL6A3-207ENST00000433762 ATRQ13535 2644 aa9.07□□□□□ -0.96
COL6A3-207ENST00000433762 C1orf43Q9BWL3 253 aa9.05□□□□□ -0.96
COL6A3-207ENST00000433762 Q6ZRU5 148 aa9.05□□□□□ -0.96
COL6A3-207ENST00000433762 LINC00528Q8N1L1 170 aa9.05□□□□□ -0.96
COL6A3-207ENST00000433762 TENM1Q9UKZ4 2725 aa9.04□□□□□ -0.96
COL6A3-207ENST00000433762 Q6ZVQ6 151 aa9.04□□□□□ -0.96
COL6A3-207ENST00000433762 C3orf56Q8N813 242 aa9.04□□□□□ -0.96
COL6A3-207ENST00000433762 LINC01547P58512 204 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-207ENST00000433762 Q6ZTC4 211 aa9.04□□□□□ -0.96
COL6A3-207ENST00000433762 J3KT08 172 aa9.03□□□□□ -0.96
COL6A3-207ENST00000433762 ESRGQ1W209 222 aa9.03□□□□□ -0.96
COL6A3-207ENST00000433762 HIGD2BQ4VC39 106 aa9.03□□□□□ -0.96
COL6A3-207ENST00000433762 FAM19A1Q7Z5A9 133 aa9.03□□□□□ -0.96
COL6A3-207ENST00000433762 PLA2G2DQ9UNK4 145 aa9.02□□□□□ -0.97
COL6A3-207ENST00000433762 TLX1NBP0CAT3 122 aa9.01□□□□□ -0.97
COL6A3-207ENST00000433762 KRTAP10-11P60412 298 aa9.01□□□□□ -0.97
COL6A3-207ENST00000433762 DNAH10OSP0CZ25 163 aa9.01□□□□□ -0.97
COL6A3-207ENST00000433762 SYCNQ0VAF6 134 aa9□□□□□ -0.97
COL6A3-207ENST00000433762 KCNQ1DNQ9H478 68 aa9□□□□□ -0.97
COL6A3-207ENST00000433762 FBN1P35555 2871 aaKnown RBP8.99□□□□□ -0.97
COL6A3-207ENST00000433762 TRAV7A0A075B6U4 112 aa8.99□□□□□ -0.97
COL6A3-207ENST00000433762 LOC107984640A0A0U1RRK4 108 aa8.99□□□□□ -0.97
COL6A3-207ENST00000433762 RETNQ9HD89 108 aa8.99□□□□□ -0.97
COL6A3-207ENST00000433762 DEFB131BA0A096LNP1 70 aa8.98□□□□□ -0.97
COL6A3-207ENST00000433762 A0A1B0GW54 56 aa8.98□□□□□ -0.97
COL6A3-207ENST00000433762 M0R2N4 97 aa8.98□□□□□ -0.97
COL6A3-207ENST00000433762 OXLD1Q5BKU9 147 aa8.98□□□□□ -0.97
COL6A3-207ENST00000433762 Q6ZRP5 223 aa8.98□□□□□ -0.97
COL6A3-207ENST00000433762 C11orf45Q8TAV5 145 aa8.97□□□□□ -0.97
COL6A3-207ENST00000433762 IGLV5-37A0A075B6J1 123 aa8.97□□□□□ -0.97
COL6A3-207ENST00000433762 IGKV2D-24A0A075B6R9 120 aa8.96□□□□□ -0.98
COL6A3-207ENST00000433762 HAMPP81172 84 aa8.96□□□□□ -0.98
COL6A3-207ENST00000433762 CYSTM1Q9H1C7 97 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms