RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 COX17Q14061 63 aa10.32□□□□□ -0.76
UPK3BP1-201ENST00000428678 LINC01546A6NGU7 62 aa10.3□□□□□ -0.76
UPK3BP1-201ENST00000428678 IGLC3P0DOY3 106 aa10.3□□□□□ -0.76
UPK3BP1-201ENST00000428678 NDUFA6P56556 154 aa10.29□□□□□ -0.76
UPK3BP1-201ENST00000428678 FA2HQ7L5A8 372 aa10.29□□□□□ -0.76
UPK3BP1-201ENST00000428678 ZNF22P17026 224 aaPredicted RBP10.28□□□□□ -0.76
UPK3BP1-201ENST00000428678 SMCO4Q9NRQ5 59 aa10.28□□□□□ -0.76
UPK3BP1-201ENST00000428678 SPINK1P00995 79 aa10.27□□□□□ -0.77
UPK3BP1-201ENST00000428678 A0A1B0GVG6 124 aa10.26□□□□□ -0.77
UPK3BP1-201ENST00000428678 NDUFA12Q9UI09 145 aa10.26□□□□□ -0.77
UPK3BP1-201ENST00000428678 LINC00158P58513 81 aa10.25□□□□□ -0.77
UPK3BP1-201ENST00000428678 SFTA2Q6UW10 78 aa10.24□□□□□ -0.77
UPK3BP1-201ENST00000428678 SMCR5Q8TEV8 140 aa10.23□□□□□ -0.77
UPK3BP1-201ENST00000428678 TRAV9-1A0A075B6T8 112 aa10.22□□□□□ -0.77
UPK3BP1-201ENST00000428678 A0A0U1RRA0 63 aa10.22□□□□□ -0.77
UPK3BP1-201ENST00000428678 PRYO14603 147 aa10.22□□□□□ -0.77
UPK3BP1-201ENST00000428678 TMEM170BQ5T4T1 132 aa10.21□□□□□ -0.77
UPK3BP1-201ENST00000428678 ETDCA0A1B0GVM5 59 aa10.2□□□□□ -0.78
UPK3BP1-201ENST00000428678 FAM19A2Q8N3H0 131 aa10.2□□□□□ -0.78
UPK3BP1-201ENST00000428678 C11orf86A6NJI1 115 aa10.19□□□□□ -0.78
UPK3BP1-201ENST00000428678 MOBPQ13875 183 aa10.19□□□□□ -0.78
UPK3BP1-201ENST00000428678 A0A096LNJ9 63 aa10.18□□□□□ -0.78
UPK3BP1-201ENST00000428678 IGLV9-49A0A0B4J1Y8 123 aa10.18□□□□□ -0.78
UPK3BP1-201ENST00000428678 NCR3O14931 201 aa10.18□□□□□ -0.78
UPK3BP1-201ENST00000428678 FABP9Q0Z7S8 132 aa10.18□□□□□ -0.78
UPK3BP1-201ENST00000428678 LINC00483Q53H64 154 aa10.18□□□□□ -0.78
UPK3BP1-201ENST00000428678 GAGE2AQ6NT46 116 aa10.18□□□□□ -0.78
UPK3BP1-201ENST00000428678 Q8N377 158 aa10.18□□□□□ -0.78
UPK3BP1-201ENST00000428678 ATP6V1G1O75348 118 aa10.17□□□□□ -0.78
UPK3BP1-201ENST00000428678 S100PP25815 95 aa10.17□□□□□ -0.78
UPK3BP1-201ENST00000428678 SPRR1AP35321 89 aa10.17□□□□□ -0.78
UPK3BP1-201ENST00000428678 BOD1L2Q8IYS8 172 aa10.17□□□□□ -0.78
UPK3BP1-201ENST00000428678 XP32Q5T750 250 aa10.16□□□□□ -0.78
UPK3BP1-201ENST00000428678 BAGE3Q86Y29 109 aa10.16□□□□□ -0.78
UPK3BP1-201ENST00000428678 KCNQ1DNQ9H478 68 aa10.16□□□□□ -0.78
UPK3BP1-201ENST00000428678 SLC25A20O43772 301 aa10.15□□□□□ -0.78
UPK3BP1-201ENST00000428678 RPS29P62273 56 aaKnown RBP10.15□□□□□ -0.78
UPK3BP1-201ENST00000428678 LCE2CQ5TA81 110 aa10.15□□□□□ -0.78
UPK3BP1-201ENST00000428678 KRTAP4-16G5E9R7 235 aaPredicted RBP10.14□□□□□ -0.79
UPK3BP1-201ENST00000428678 HBDP02042 147 aa10.14□□□□□ -0.79
UPK3BP1-201ENST00000428678 SMIM13P0DJ93 91 aa10.14□□□□□ -0.79
UPK3BP1-201ENST00000428678 PMCHL1Q16048 86 aa10.14□□□□□ -0.79
UPK3BP1-201ENST00000428678 COX19Q49B96 90 aa10.14□□□□□ -0.79
UPK3BP1-201ENST00000428678 SSBP3-AS1Q7Z2R9 100 aa10.13□□□□□ -0.79
UPK3BP1-201ENST00000428678 TRBV10-3A0A0K0K1G6 114 aa10.12□□□□□ -0.79
UPK3BP1-201ENST00000428678 MEIG1Q5JSS6 88 aa10.12□□□□□ -0.79
UPK3BP1-201ENST00000428678 MIR7-3HGQ8N6C7 128 aa10.11□□□□□ -0.79
UPK3BP1-201ENST00000428678 URB1-AS1Q96HZ7 61 aa10.11□□□□□ -0.79
UPK3BP1-201ENST00000428678 ERC2-IT1O76042 136 aa10.1□□□□□ -0.79
UPK3BP1-201ENST00000428678 LINC00614P0C842 121 aa10.1□□□□□ -0.79
UPK3BP1-201ENST00000428678 S100A12P80511 92 aa10.1□□□□□ -0.79
UPK3BP1-201ENST00000428678 CHTOPQ9Y3Y2 248 aaKnown RBP10.1□□□□□ -0.79
UPK3BP1-201ENST00000428678 B5MCH6 92 aa10.09□□□□□ -0.79
UPK3BP1-201ENST00000428678 SEC11CQ9BY50 192 aa10.09□□□□□ -0.79
UPK3BP1-201ENST00000428678 TMEM223A0PJW6 202 aa10.08□□□□□ -0.8
UPK3BP1-201ENST00000428678 C18orf32Q8TCD1 76 aa10.08□□□□□ -0.8
UPK3BP1-201ENST00000428678 TMEM218A2RU14 115 aa10.07□□□□□ -0.8
UPK3BP1-201ENST00000428678 MT1HP80294 61 aa10.07□□□□□ -0.8
UPK3BP1-201ENST00000428678 KRTAP19-2Q3LHN2 52 aa10.06□□□□□ -0.8
UPK3BP1-201ENST00000428678 C9orf153Q5TBE3 101 aa10.06□□□□□ -0.8
UPK3BP1-201ENST00000428678 CFC1BP0CG36 223 aa10.05□□□□□ -0.8
UPK3BP1-201ENST00000428678 Q9BRP9 147 aa10.05□□□□□ -0.8
UPK3BP1-201ENST00000428678 HERV-K104P63124 156 aa10.04□□□□□ -0.8
UPK3BP1-201ENST00000428678 CLLU1Q5K131 121 aa10.04□□□□□ -0.8
UPK3BP1-201ENST00000428678 UQCC3Q6UW78 93 aa10.04□□□□□ -0.8
UPK3BP1-201ENST00000428678 DDTP30046 118 aa10.03□□□□□ -0.8
UPK3BP1-201ENST00000428678 IGLV8-61A0A075B6I0 122 aa10.02□□□□□ -0.81
UPK3BP1-201ENST00000428678 LINC00587B1AMM8 73 aa10.02□□□□□ -0.81
UPK3BP1-201ENST00000428678 PCOTHQ58A44 107 aa10.02□□□□□ -0.81
UPK3BP1-201ENST00000428678 Q6ZRX8 168 aa10.02□□□□□ -0.81
UPK3BP1-201ENST00000428678 MAP1LC3CQ9BXW4 147 aa10.02□□□□□ -0.81
UPK3BP1-201ENST00000428678 TRAPPC1Q9Y5R8 145 aa10.02□□□□□ -0.81
UPK3BP1-201ENST00000428678 TRAV12-1A0A0B4J245 112 aa9.99□□□□□ -0.81
UPK3BP1-201ENST00000428678 MYMXA0A1B0GTQ4 84 aa9.99□□□□□ -0.81
UPK3BP1-201ENST00000428678 IFI27L1Q96BM0 104 aa9.98□□□□□ -0.81
UPK3BP1-201ENST00000428678 RPS10P5Q9NQ39 176 aa9.98□□□□□ -0.81
UPK3BP1-201ENST00000428678 TRBV10-2A0A0K0K1G8 114 aa9.97□□□□□ -0.81
UPK3BP1-201ENST00000428678 C9orf92A6NGG3 77 aa9.96□□□□□ -0.82
UPK3BP1-201ENST00000428678 LORP23490 312 aaPredicted RBP9.95□□□□□ -0.82
UPK3BP1-201ENST00000428678 JOSD1Q15040 202 aaPredicted RBP9.95□□□□□ -0.82
UPK3BP1-201ENST00000428678 RHEBQ15382 184 aa9.95□□□□□ -0.82
UPK3BP1-201ENST00000428678 SPANXB1Q9NS25 103 aaPredicted RBP9.95□□□□□ -0.82
UPK3BP1-201ENST00000428678 KRTAP10-6P60371 365 aaPredicted RBP9.94□□□□□ -0.82
UPK3BP1-201ENST00000428678 S100A7L2Q5SY68 101 aa9.94□□□□□ -0.82
UPK3BP1-201ENST00000428678 ST20-AS1Q8NBB2 130 aa9.94□□□□□ -0.82
UPK3BP1-201ENST00000428678 LOC107984156A0A0G2JMH3 177 aa9.93□□□□□ -0.82
UPK3BP1-201ENST00000428678 HRCT1Q6UXD1 115 aa9.93□□□□□ -0.82
UPK3BP1-201ENST00000428678 ARL17AQ8IVW1 177 aa9.93□□□□□ -0.82
UPK3BP1-201ENST00000428678 MIEN1Q9BRT3 115 aa9.93□□□□□ -0.82
UPK3BP1-201ENST00000428678 LIMD2Q9BT23 127 aa9.93□□□□□ -0.82
UPK3BP1-201ENST00000428678 TRAV23DV6A0A075B6W5 121 aa9.92□□□□□ -0.82
UPK3BP1-201ENST00000428678 IGLV6-57P01721 117 aa9.92□□□□□ -0.82
UPK3BP1-201ENST00000428678 TSPEAR-AS2P59090 65 aa9.92□□□□□ -0.82
UPK3BP1-201ENST00000428678 M0R2T5 61 aa9.91□□□□□ -0.82
UPK3BP1-201ENST00000428678 H0Y8G0 127 aa9.89□□□□□ -0.83
UPK3BP1-201ENST00000428678 ZNF73O43830 326 aaPredicted RBP9.89□□□□□ -0.83
UPK3BP1-201ENST00000428678 CHCHD1Q96BP2 118 aaKnown RBP9.89□□□□□ -0.83
UPK3BP1-201ENST00000428678 LEPROTO15243 131 aa9.87□□□□□ -0.83
UPK3BP1-201ENST00000428678 NDUFC2O95298 119 aa9.87□□□□□ -0.83
UPK3BP1-201ENST00000428678 C10orf91Q5T1B1 145 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms