RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 V9GYY9 64 aa7.33□□□□□ -1.24
CUX1-205ENST00000425244 CELA1Q9UNI1 258 aa7.33□□□□□ -1.24
CUX1-205ENST00000425244 CHCHD10Q8WYQ3 142 aaPredicted RBP7.32□□□□□ -1.24
CUX1-205ENST00000425244 Q8IZM0 81 aa7.31□□□□□ -1.24
CUX1-205ENST00000425244 C2orf48Q96LS8 159 aa7.31□□□□□ -1.24
CUX1-205ENST00000425244 PRR3P79522 188 aaKnown RBP7.31□□□□□ -1.24
CUX1-205ENST00000425244 REG3AQ06141 175 aa7.31□□□□□ -1.24
CUX1-205ENST00000425244 Q8NAQ8 132 aa7.31□□□□□ -1.24
CUX1-205ENST00000425244 C1orf43Q9BWL3 253 aa7.31□□□□□ -1.24
CUX1-205ENST00000425244 K7EIL1 84 aa7.31□□□□□ -1.24
CUX1-205ENST00000425244 TMEM258P61165 79 aa7.31□□□□□ -1.24
CUX1-205ENST00000425244 C22orf24Q9Y442 160 aa7.31□□□□□ -1.24
CUX1-205ENST00000425244 hADV29S1A0JD25 119 aa7.3□□□□□ -1.24
CUX1-205ENST00000425244 LECT2O14960 151 aa7.3□□□□□ -1.24
CUX1-205ENST00000425244 MIFP14174 115 aa7.3□□□□□ -1.24
CUX1-205ENST00000425244 C9orf116Q5BN46 136 aaPredicted RBP7.3□□□□□ -1.24
CUX1-205ENST00000425244 CD164L2Q6UWJ8 174 aa7.3□□□□□ -1.24
CUX1-205ENST00000425244 SLPIP03973 132 aa7.29□□□□□ -1.24
CUX1-205ENST00000425244 CYSTM1Q9H1C7 97 aa7.29□□□□□ -1.24
CUX1-205ENST00000425244 DSCR8Q96T75 97 aa7.29□□□□□ -1.24
CUX1-205ENST00000425244 H0YGX0 51 aa7.28□□□□□ -1.24
CUX1-205ENST00000425244 ACYP1P07311 99 aa7.27□□□□□ -1.25
CUX1-205ENST00000425244 SPART-AS1P0CW21 52 aa7.27□□□□□ -1.25
CUX1-205ENST00000425244 SMCR5Q8TEV8 140 aa7.27□□□□□ -1.25
CUX1-205ENST00000425244 INAFM2P0DMQ5 153 aa7.27□□□□□ -1.25
CUX1-205ENST00000425244 KIAA0087Q14695 138 aa7.27□□□□□ -1.25
CUX1-205ENST00000425244 C9orf129Q5T035 196 aaKnown RBP7.27□□□□□ -1.25
CUX1-205ENST00000425244 A0A0J9YWU9 116 aa7.26□□□□□ -1.25
CUX1-205ENST00000425244 LINC00336Q6ZUF6 198 aa7.26□□□□□ -1.25
CUX1-205ENST00000425244 C14orf132Q9NPU4 83 aa7.26□□□□□ -1.25
CUX1-205ENST00000425244 PKIGQ9Y2B9 76 aa7.26□□□□□ -1.25
CUX1-205ENST00000425244 HUWE1Q7Z6Z7 4374 aaKnown RBP7.26□□□□□ -1.25
CUX1-205ENST00000425244 MEGF8Q7Z7M0 2845 aa7.26□□□□□ -1.25
CUX1-205ENST00000425244 C6orf223Q8N319 242 aa7.25□□□□□ -1.25
CUX1-205ENST00000425244 KLK12Q9UKR0 248 aa7.25□□□□□ -1.25
CUX1-205ENST00000425244 NCR3O14931 201 aa7.25□□□□□ -1.25
CUX1-205ENST00000425244 LINC01561Q8N1V8 128 aa7.25□□□□□ -1.25
CUX1-205ENST00000425244 STAB2Q8WWQ8 2551 aa7.24□□□□□ -1.25
CUX1-205ENST00000425244 ZNF561-AS1K7EIQ3 104 aa7.24□□□□□ -1.25
CUX1-205ENST00000425244 CXCL5P42830 114 aa7.24□□□□□ -1.25
CUX1-205ENST00000425244 SPAG11BQ08648 103 aa7.24□□□□□ -1.25
CUX1-205ENST00000425244 LINC00643Q86TS7 51 aa7.24□□□□□ -1.25
CUX1-205ENST00000425244 C10orf25Q5T742 122 aa7.24□□□□□ -1.25
CUX1-205ENST00000425244 UNQ6190/PRO20217Q6UXQ8 127 aa7.24□□□□□ -1.25
CUX1-205ENST00000425244 ATOX1O00244 68 aa7.23□□□□□ -1.25
CUX1-205ENST00000425244 LELP1Q5T871 98 aa7.23□□□□□ -1.25
CUX1-205ENST00000425244 NANOS2P60321 138 aaKnown RBP7.23□□□□□ -1.25
CUX1-205ENST00000425244 Q6ZTC4 211 aa7.23□□□□□ -1.25
CUX1-205ENST00000425244 HIST1H4AP62805 103 aaKnown RBP7.22□□□□□ -1.25
CUX1-205ENST00000425244 COX17Q14061 63 aa7.22□□□□□ -1.25
CUX1-205ENST00000425244 KPRPQ5T749 579 aaPredicted RBP7.22□□□□□ -1.25
CUX1-205ENST00000425244 ORMDL1Q9P0S3 153 aa7.22□□□□□ -1.25
CUX1-205ENST00000425244 Q8NDZ9 215 aa7.22□□□□□ -1.25
CUX1-205ENST00000425244 PRKDCP78527 4128 aaKnown RBP7.21□□□□□ -1.25
CUX1-205ENST00000425244 S100A7L2Q5SY68 101 aa7.21□□□□□ -1.25
CUX1-205ENST00000425244 DNAH9Q9NYC9 4486 aa7.21□□□□□ -1.25
CUX1-205ENST00000425244 UPK3BQ9BT76 320 aa7.21□□□□□ -1.26
CUX1-205ENST00000425244 C11orf45Q8TAV5 145 aa7.2□□□□□ -1.26
CUX1-205ENST00000425244 C6orf99Q4VX62 202 aa7.2□□□□□ -1.26
CUX1-205ENST00000425244 NDUFC2O95298 119 aa7.2□□□□□ -1.26
CUX1-205ENST00000425244 LYPD5Q6UWN5 251 aa7.19□□□□□ -1.26
CUX1-205ENST00000425244 ENHOQ6UWT2 76 aa7.19□□□□□ -1.26
CUX1-205ENST00000425244 SDIM1Q6ZPB5 146 aa7.19□□□□□ -1.26
CUX1-205ENST00000425244 Q8N814 137 aa7.19□□□□□ -1.26
CUX1-205ENST00000425244 LYSTQ99698 3801 aa7.19□□□□□ -1.26
CUX1-205ENST00000425244 TM2D3Q9BRN9 247 aa7.19□□□□□ -1.26
CUX1-205ENST00000425244 FAM236DA0A1B0GTK5 79 aa7.19□□□□□ -1.26
CUX1-205ENST00000425244 FAM236CP0DP71 79 aa7.19□□□□□ -1.26
CUX1-205ENST00000425244 RPL18AQ02543 176 aaKnown RBP7.18□□□□□ -1.26
CUX1-205ENST00000425244 TENM2Q9NT68 2774 aa7.18□□□□□ -1.26
CUX1-205ENST00000425244 C1orf195Q5TG92 126 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 SERP2Q8N6R1 65 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 OBSCN-AS1Q96MR7 158 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 XAGE1AQ9HD64 81 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 PRR34Q9NV39 138 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 LINC00846Q9NV44 126 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 IGKV3D-7A0A0C4DH55 119 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 HIGD2BQ4VC39 106 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 WFDC10BQ8IUB3 73 aa7.17□□□□□ -1.26
CUX1-205ENST00000425244 DEFB131BA0A096LNP1 70 aa7.16□□□□□ -1.26
CUX1-205ENST00000425244 TGP01266 2768 aa7.16□□□□□ -1.26
CUX1-205ENST00000425244 C6orf48Q9UBA6 75 aa7.14□□□□□ -1.27
CUX1-205ENST00000425244 TMEM256-PLSCR3K7ERE1 68 aa7.14□□□□□ -1.27
CUX1-205ENST00000425244 LINC00167Q96N53 147 aa7.14□□□□□ -1.27
CUX1-205ENST00000425244 CSMD3Q7Z407 3707 aa7.14□□□□□ -1.27
CUX1-205ENST00000425244 EPM2AB3EWF7 344 aa7.14□□□□□ -1.27
CUX1-205ENST00000425244 LINC00575Q6W349 94 aa7.13□□□□□ -1.27
CUX1-205ENST00000425244 CAMK2N2Q96S95 79 aa7.13□□□□□ -1.27
CUX1-205ENST00000425244 B9D2Q9BPU9 175 aa7.13□□□□□ -1.27
CUX1-205ENST00000425244 NDUFC2-KCTD14E9PQ53 114 aa7.12□□□□□ -1.27
CUX1-205ENST00000425244 JMJD7-PLA2G4BH0Y9G9 81 aa7.12□□□□□ -1.27
CUX1-205ENST00000425244 TRBV10-3A0A0K0K1G6 114 aa7.12□□□□□ -1.27
CUX1-205ENST00000425244 CCKP06307 115 aa7.12□□□□□ -1.27
CUX1-205ENST00000425244 IGLV6-57P01721 117 aa7.11□□□□□ -1.27
CUX1-205ENST00000425244 C4orf48Q5BLP8 95 aa7.11□□□□□ -1.27
CUX1-205ENST00000425244 LAMTOR3Q9UHA4 124 aa7.11□□□□□ -1.27
CUX1-205ENST00000425244 A0A087WVE0 104 aa7.1□□□□□ -1.27
CUX1-205ENST00000425244 A0A0U1RQV1 116 aa7.1□□□□□ -1.27
CUX1-205ENST00000425244 ESRGQ1W209 222 aa7.1□□□□□ -1.27
CUX1-205ENST00000425244 FBN3Q75N90 2809 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms