RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 C11orf45Q8TAV5 145 aa8.03□□□□□ -1.12
PTPRN-204ENST00000423636 GAGE2BQ13066 116 aa8.03□□□□□ -1.12
PTPRN-204ENST00000423636 CASC10Q5T4H9 136 aa8.02□□□□□ -1.13
PTPRN-204ENST00000423636 TGP01266 2768 aa8.01□□□□□ -1.13
PTPRN-204ENST00000423636 SMCR5Q8TEV8 140 aa8.01□□□□□ -1.13
PTPRN-204ENST00000423636 RPL28P46779 137 aaKnown RBP8□□□□□ -1.13
PTPRN-204ENST00000423636 C6orf48Q9UBA6 75 aa8□□□□□ -1.13
PTPRN-204ENST00000423636 DNAH7Q8WXX0 4024 aa8□□□□□ -1.13
PTPRN-204ENST00000423636 H3BT86 120 aa8□□□□□ -1.13
PTPRN-204ENST00000423636 ZNF561-AS1K7EIQ3 104 aa8□□□□□ -1.13
PTPRN-204ENST00000423636 SMIM20Q8N5G0 67 aa8□□□□□ -1.13
PTPRN-204ENST00000423636 COPS9Q8WXC6 57 aa8□□□□□ -1.13
PTPRN-204ENST00000423636 CAMK2N2Q96S95 79 aa8□□□□□ -1.13
PTPRN-204ENST00000423636 HUWE1Q7Z6Z7 4374 aaKnown RBP7.99□□□□□ -1.13
PTPRN-204ENST00000423636 Q6ZRU5 148 aa7.98□□□□□ -1.13
PTPRN-204ENST00000423636 IGKV3D-7A0A0C4DH55 119 aa7.98□□□□□ -1.13
PTPRN-204ENST00000423636 TRBV10-3A0A0K0K1G6 114 aa7.96□□□□□ -1.14
PTPRN-204ENST00000423636 CXCL5P42830 114 aa7.95□□□□□ -1.14
PTPRN-204ENST00000423636 C1orf43Q9BWL3 253 aa7.95□□□□□ -1.14
PTPRN-204ENST00000423636 SCGB1A1P11684 91 aa7.94□□□□□ -1.14
PTPRN-204ENST00000423636 SDIM1Q6ZPB5 146 aa7.94□□□□□ -1.14
PTPRN-204ENST00000423636 K7EIL1 84 aa7.94□□□□□ -1.14
PTPRN-204ENST00000423636 TRACP01848 142 aa7.94□□□□□ -1.14
PTPRN-204ENST00000423636 PRR34Q9NV39 138 aa7.94□□□□□ -1.14
PTPRN-204ENST00000423636 MDFIQ99750 246 aa7.93□□□□□ -1.14
PTPRN-204ENST00000423636 RPL37AP8A6NKH3 93 aa7.93□□□□□ -1.14
PTPRN-204ENST00000423636 CCDC179H3BU77 68 aa7.93□□□□□ -1.14
PTPRN-204ENST00000423636 FAM168BA1KXE4 195 aa7.92□□□□□ -1.14
PTPRN-204ENST00000423636 A0A087WVE0 104 aa7.92□□□□□ -1.14
PTPRN-204ENST00000423636 C15orf56Q8N910 161 aa7.92□□□□□ -1.14
PTPRN-204ENST00000423636 TMEM126AQ9H061 195 aa7.92□□□□□ -1.14
PTPRN-204ENST00000423636 M0R2N4 97 aa7.91□□□□□ -1.14
PTPRN-204ENST00000423636 DNAH9Q9NYC9 4486 aa7.91□□□□□ -1.14
PTPRN-204ENST00000423636 FUSP35637 526 aaKnown RBP eCLIP7.91□□□□□ -1.14
PTPRN-204ENST00000423636 Q6ZRP5 223 aa7.91□□□□□ -1.14
PTPRN-204ENST00000423636 DEFB105AQ8NG35 78 aa7.91□□□□□ -1.14
PTPRN-204ENST00000423636 KLK5Q9Y337 293 aaPredicted RBP7.91□□□□□ -1.14
PTPRN-204ENST00000423636 LINC00588Q9Y4M8 146 aa7.91□□□□□ -1.14
PTPRN-204ENST00000423636 DNAH3Q8TD57 4116 aa7.9□□□□□ -1.14
PTPRN-204ENST00000423636 Q6ZQY7 126 aa7.9□□□□□ -1.14
PTPRN-204ENST00000423636 Q8N814 137 aa7.9□□□□□ -1.14
PTPRN-204ENST00000423636 LINC00846Q9NV44 126 aa7.9□□□□□ -1.14
PTPRN-204ENST00000423636 LAMTOR3Q9UHA4 124 aa7.9□□□□□ -1.14
PTPRN-204ENST00000423636 ORMDL1Q9P0S3 153 aa7.9□□□□□ -1.14
PTPRN-204ENST00000423636 EGFEM1PQ0D2K5 195 aa7.9□□□□□ -1.15
PTPRN-204ENST00000423636 WIPF1O43516 503 aa7.89□□□□□ -1.15
PTPRN-204ENST00000423636 FAM236AA0A1B0GUQ0 79 aa7.89□□□□□ -1.15
PTPRN-204ENST00000423636 FAM236BA0A1B0GV22 79 aa7.89□□□□□ -1.15
PTPRN-204ENST00000423636 H0YGX0 51 aa7.89□□□□□ -1.15
PTPRN-204ENST00000423636 NHLRC4P0CG21 123 aaPredicted RBP7.88□□□□□ -1.15
PTPRN-204ENST00000423636 NDUFV3P56181 108 aaKnown RBP7.88□□□□□ -1.15
PTPRN-204ENST00000423636 DNHD1Q96M86 4753 aa7.88□□□□□ -1.15
PTPRN-204ENST00000423636 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.87□□□□□ -1.15
PTPRN-204ENST00000423636 KRTAP26-1Q6PEX3 210 aa7.87□□□□□ -1.15
PTPRN-204ENST00000423636 SERTAD4-AS1Q5TG53 156 aa7.86□□□□□ -1.15
PTPRN-204ENST00000423636 IGKV2-24A0A0C4DH68 120 aa7.86□□□□□ -1.15
PTPRN-204ENST00000423636 M0QXV9 152 aa7.86□□□□□ -1.15
PTPRN-204ENST00000423636 C3orf22Q8N5N4 141 aa7.86□□□□□ -1.15
PTPRN-204ENST00000423636 HIST1H4AP62805 103 aaKnown RBP7.85□□□□□ -1.15
PTPRN-204ENST00000423636 COX17Q14061 63 aa7.85□□□□□ -1.15
PTPRN-204ENST00000423636 SCXQ7RTU7 201 aa7.85□□□□□ -1.15
PTPRN-204ENST00000423636 TRAV23DV6A0A075B6W5 121 aa7.85□□□□□ -1.15
PTPRN-204ENST00000423636 hADV29S1A0JD25 119 aa7.85□□□□□ -1.15
PTPRN-204ENST00000423636 USP17L23D6RBM5 183 aa7.84□□□□□ -1.15
PTPRN-204ENST00000423636 PLECQ15149 4684 aaKnown RBP7.84□□□□□ -1.15
PTPRN-204ENST00000423636 SYCNQ0VAF6 134 aa7.83□□□□□ -1.16
PTPRN-204ENST00000423636 FAM19A5Q7Z5A7 132 aaPredicted RBP7.83□□□□□ -1.16
PTPRN-204ENST00000423636 LINC00575Q6W349 94 aa7.83□□□□□ -1.16
PTPRN-204ENST00000423636 MEGF8Q7Z7M0 2845 aa7.83□□□□□ -1.16
PTPRN-204ENST00000423636 PRKDCP78527 4128 aaKnown RBP7.82□□□□□ -1.16
PTPRN-204ENST00000423636 ZNF73O43830 326 aaPredicted RBP7.82□□□□□ -1.16
PTPRN-204ENST00000423636 INAFM2P0DMQ5 153 aa7.82□□□□□ -1.16
PTPRN-204ENST00000423636 KRTAP1-5Q9BYS1 174 aa7.82□□□□□ -1.16
PTPRN-204ENST00000423636 A0A0G2JQZ4 141 aa7.81□□□□□ -1.16
PTPRN-204ENST00000423636 A0A1W2PNN7 141 aa7.81□□□□□ -1.16
PTPRN-204ENST00000423636 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.81□□□□□ -1.16
PTPRN-204ENST00000423636 NDUFC2O95298 119 aa7.81□□□□□ -1.16
PTPRN-204ENST00000423636 VPREB1P12018 145 aa7.81□□□□□ -1.16
PTPRN-204ENST00000423636 LINC01561Q8N1V8 128 aa7.81□□□□□ -1.16
PTPRN-204ENST00000423636 DIRC1Q969H9 104 aa7.8□□□□□ -1.16
PTPRN-204ENST00000423636 TRAV10A0A0B4J240 114 aa7.8□□□□□ -1.16
PTPRN-204ENST00000423636 NDUFC2-KCTD14E9PQ53 114 aa7.8□□□□□ -1.16
PTPRN-204ENST00000423636 IGLV6-57P01721 117 aa7.8□□□□□ -1.16
PTPRN-204ENST00000423636 LINC01556Q5JQF7 62 aa7.8□□□□□ -1.16
PTPRN-204ENST00000423636 C9orf153Q5TBE3 101 aa7.8□□□□□ -1.16
PTPRN-204ENST00000423636 FAM19A1Q7Z5A9 133 aa7.79□□□□□ -1.16
PTPRN-204ENST00000423636 NKAPP1Q8N9T2 125 aa7.79□□□□□ -1.16
PTPRN-204ENST00000423636 HAMPP81172 84 aa7.78□□□□□ -1.16
PTPRN-204ENST00000423636 COX7BP24311 80 aa7.78□□□□□ -1.16
PTPRN-204ENST00000423636 UBE2DNLQ8IWF7 75 aa7.78□□□□□ -1.16
PTPRN-204ENST00000423636 LINC01600Q96MT4 127 aa7.78□□□□□ -1.16
PTPRN-204ENST00000423636 TMEM256-PLSCR3K7ERE1 68 aa7.77□□□□□ -1.17
PTPRN-204ENST00000423636 STARD9Q9P2P6 4700 aa7.77□□□□□ -1.17
PTPRN-204ENST00000423636 PSCAO43653 123 aa7.77□□□□□ -1.17
PTPRN-204ENST00000423636 CHTF8P0CG12 524 aa7.77□□□□□ -1.17
PTPRN-204ENST00000423636 LINC00643Q86TS7 51 aa7.77□□□□□ -1.17
PTPRN-204ENST00000423636 FAM240AA0A1B0GVK7 77 aa7.76□□□□□ -1.17
PTPRN-204ENST00000423636 RBM3P98179 157 aaKnown RBP7.76□□□□□ -1.17
PTPRN-204ENST00000423636 C7orf33Q8WU49 177 aa7.76□□□□□ -1.17
PTPRN-204ENST00000423636 TM2D3Q9BRN9 247 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms