RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CXCL6P80162 114 aa7.52□□□□□ -1.21
LIMS1-207ENST00000422797 LELP1Q5T871 98 aa7.52□□□□□ -1.21
LIMS1-207ENST00000422797 CLPSL2Q6UWE3 100 aa7.52□□□□□ -1.21
LIMS1-207ENST00000422797 DSCR8Q96T75 97 aa7.52□□□□□ -1.21
LIMS1-207ENST00000422797 CENPEQ02224 2701 aa7.51□□□□□ -1.21
LIMS1-207ENST00000422797 ITPR3Q14573 2671 aa7.51□□□□□ -1.21
LIMS1-207ENST00000422797 TRAV7A0A075B6U4 112 aa7.51□□□□□ -1.21
LIMS1-207ENST00000422797 LOC107984640A0A0U1RRK4 108 aa7.51□□□□□ -1.21
LIMS1-207ENST00000422797 DAD1P61803 113 aa7.51□□□□□ -1.21
LIMS1-207ENST00000422797 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.51□□□□□ -1.21
LIMS1-207ENST00000422797 FAM19A5Q7Z5A7 132 aaPredicted RBP7.51□□□□□ -1.21
LIMS1-207ENST00000422797 LAMTOR3Q9UHA4 124 aa7.51□□□□□ -1.21
LIMS1-207ENST00000422797 MIFP14174 115 aa7.5□□□□□ -1.21
LIMS1-207ENST00000422797 KRTAP1-1Q07627 177 aa7.5□□□□□ -1.21
LIMS1-207ENST00000422797 ENHOQ6UWT2 76 aa7.5□□□□□ -1.21
LIMS1-207ENST00000422797 DIRC1Q969H9 104 aa7.5□□□□□ -1.21
LIMS1-207ENST00000422797 POLQO75417 2590 aa7.5□□□□□ -1.21
LIMS1-207ENST00000422797 PRR3P79522 188 aaKnown RBP7.49□□□□□ -1.21
LIMS1-207ENST00000422797 PRR34Q9NV39 138 aa7.49□□□□□ -1.21
LIMS1-207ENST00000422797 J3QL48 77 aa7.48□□□□□ -1.21
LIMS1-207ENST00000422797 OXLD1Q5BKU9 147 aa7.48□□□□□ -1.21
LIMS1-207ENST00000422797 OTOGQ6ZRI0 2925 aa7.47□□□□□ -1.21
LIMS1-207ENST00000422797 CELSR2Q9HCU4 2923 aa7.47□□□□□ -1.21
LIMS1-207ENST00000422797 TRAV23DV6A0A075B6W5 121 aa7.47□□□□□ -1.21
LIMS1-207ENST00000422797 VPS13CQ709C8 3753 aa7.47□□□□□ -1.21
LIMS1-207ENST00000422797 F8P00451 2351 aa7.47□□□□□ -1.21
LIMS1-207ENST00000422797 FAM19A1Q7Z5A9 133 aa7.47□□□□□ -1.21
LIMS1-207ENST00000422797 MXRA5Q9NR99 2828 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 SETD2Q9BYW2 2564 aaPredicted RBP7.46□□□□□ -1.22
LIMS1-207ENST00000422797 IGLV10-54A0A075B6I4 117 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 A0A096LPF7 62 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 F8WDY8 70 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 NDUFC1O43677 76 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 SPART-AS1P0CW21 52 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 COX7BP24311 80 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 LINC01547P58512 204 aaPredicted RBP7.46□□□□□ -1.22
LIMS1-207ENST00000422797 C9orf116Q5BN46 136 aaPredicted RBP7.46□□□□□ -1.22
LIMS1-207ENST00000422797 UNQ6190/PRO20217Q6UXQ8 127 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 Q6ZVQ6 151 aa7.46□□□□□ -1.22
LIMS1-207ENST00000422797 Q6ZQY7 126 aa7.45□□□□□ -1.22
LIMS1-207ENST00000422797 CYSTM1Q9H1C7 97 aa7.45□□□□□ -1.22
LIMS1-207ENST00000422797 CRYBG3Q68DQ2 2970 aa7.45□□□□□ -1.22
LIMS1-207ENST00000422797 KRTAP4-8A0A0G2JLE6 195 aa7.44□□□□□ -1.22
LIMS1-207ENST00000422797 TRBV7-4A0A0J9YYF1 115 aa7.44□□□□□ -1.22
LIMS1-207ENST00000422797 FAM236DA0A1B0GTK5 79 aa7.44□□□□□ -1.22
LIMS1-207ENST00000422797 FAM236CP0DP71 79 aa7.44□□□□□ -1.22
LIMS1-207ENST00000422797 ATP5EP56381 51 aaPredicted RBP7.44□□□□□ -1.22
LIMS1-207ENST00000422797 KLKP1Q107X0 134 aa7.44□□□□□ -1.22
LIMS1-207ENST00000422797 ZNF73O43830 326 aaPredicted RBP7.43□□□□□ -1.22
LIMS1-207ENST00000422797 ELOF1P60002 83 aaKnown RBP7.43□□□□□ -1.22
LIMS1-207ENST00000422797 Q8NDZ9 215 aa7.43□□□□□ -1.22
LIMS1-207ENST00000422797 SERP1Q9Y6X1 66 aa7.43□□□□□ -1.22
LIMS1-207ENST00000422797 EGFEM1PQ0D2K5 195 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 C10orf25Q5T742 122 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 C20orf197Q8N268 126 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 Q8NAQ8 132 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 NF1P21359 2839 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 H3BNG1 76 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 M0R378 163 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 HAMPP81172 84 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 DEFB135Q30KP9 77 aa7.42□□□□□ -1.22
LIMS1-207ENST00000422797 ZANQ9Y493 2812 aa7.41□□□□□ -1.22
LIMS1-207ENST00000422797 NOTCH3Q9UM47 2321 aa7.41□□□□□ -1.22
LIMS1-207ENST00000422797 ERC2-IT1O76042 136 aa7.41□□□□□ -1.22
LIMS1-207ENST00000422797 WFDC9Q8NEX5 89 aa7.41□□□□□ -1.22
LIMS1-207ENST00000422797 C6orf48Q9UBA6 75 aa7.41□□□□□ -1.22
LIMS1-207ENST00000422797 FBN3Q75N90 2809 aa7.4□□□□□ -1.22
LIMS1-207ENST00000422797 A0A1B0GW54 56 aa7.4□□□□□ -1.22
LIMS1-207ENST00000422797 SPATA3Q8NHX4 192 aa7.4□□□□□ -1.22
LIMS1-207ENST00000422797 KLK12Q9UKR0 248 aa7.4□□□□□ -1.22
LIMS1-207ENST00000422797 APCP25054 2843 aa7.39□□□□□ -1.23
LIMS1-207ENST00000422797 EPM2AB3EWF7 344 aa7.39□□□□□ -1.23
LIMS1-207ENST00000422797 HIVEP1P15822 2718 aa7.39□□□□□ -1.23
LIMS1-207ENST00000422797 PDZD2O15018 2839 aa7.39□□□□□ -1.23
LIMS1-207ENST00000422797 TLN2Q9Y4G6 2542 aa7.38□□□□□ -1.23
LIMS1-207ENST00000422797 WNK1Q9H4A3 2382 aa7.38□□□□□ -1.23
LIMS1-207ENST00000422797 KRTAP10-3P60369 221 aa7.38□□□□□ -1.23
LIMS1-207ENST00000422797 KRTAP9-9Q9BYP9 154 aa7.38□□□□□ -1.23
LIMS1-207ENST00000422797 KRTAP9-4Q9BYQ2 154 aa7.38□□□□□ -1.23
LIMS1-207ENST00000422797 MTORP42345 2549 aa7.38□□□□□ -1.23
LIMS1-207ENST00000422797 H7BZZ5 65 aa7.37□□□□□ -1.23
LIMS1-207ENST00000422797 VPREB1P12018 145 aa7.37□□□□□ -1.23
LIMS1-207ENST00000422797 Q8N3U1 123 aa7.37□□□□□ -1.23
LIMS1-207ENST00000422797 CAMK2N2Q96S95 79 aa7.37□□□□□ -1.23
LIMS1-207ENST00000422797 CELA1Q9UNI1 258 aa7.37□□□□□ -1.23
LIMS1-207ENST00000422797 AKAP9Q99996 3911 aa7.37□□□□□ -1.23
LIMS1-207ENST00000422797 MAP1AP78559 2803 aaPredicted RBP7.35□□□□□ -1.23
LIMS1-207ENST00000422797 LINC00528Q8N1L1 170 aa7.35□□□□□ -1.23
LIMS1-207ENST00000422797 DEFB4AO15263 64 aa7.34□□□□□ -1.23
LIMS1-207ENST00000422797 OXTP01178 125 aa7.34□□□□□ -1.23
LIMS1-207ENST00000422797 HTN3P15516 51 aa7.34□□□□□ -1.23
LIMS1-207ENST00000422797 M0R2N4 97 aa7.33□□□□□ -1.24
LIMS1-207ENST00000422797 Q5XG85 94 aa7.33□□□□□ -1.24
LIMS1-207ENST00000422797 XAGE1AQ9HD64 81 aa7.33□□□□□ -1.24
LIMS1-207ENST00000422797 JMJD1CQ15652 2540 aa7.32□□□□□ -1.24
LIMS1-207ENST00000422797 TRAV10A0A0B4J240 114 aa7.32□□□□□ -1.24
LIMS1-207ENST00000422797 DNHD1Q96M86 4753 aa7.32□□□□□ -1.24
LIMS1-207ENST00000422797 SMIM26A0A096LP01 95 aa7.32□□□□□ -1.24
LIMS1-207ENST00000422797 NREPQ16612 68 aa7.32□□□□□ -1.24
LIMS1-207ENST00000422797 CCDC168Q8NDH2 2452 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms