RNA–Protein interactions for RNA: ENST00000419181.5

GTF3A-202, Transcript of general transcription factor IIIA, humanhuman

TSL 1 (best)

Gene GTF3A, Length 1,191 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-202ENST00000419181 HIST1H2BCP62807 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 RPL24P83731 157 aaKnown RBP12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST2H2BEQ16778 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.21□□□□□ -0.45
GTF3A-202ENST00000419181 PRR26Q8N8Z3 221 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 Q8NDZ9 215 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST1H2BHQ93079 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST1H2BNQ99877 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST1H2BMQ99879 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 RPL28P46779 137 aaKnown RBP12.2□□□□□ -0.46
GTF3A-202ENST00000419181 IGKV2-28A0A075B6P5 120 aa12.19□□□□□ -0.46
GTF3A-202ENST00000419181 A0A0U1RRA0 63 aa12.19□□□□□ -0.46
GTF3A-202ENST00000419181 DPM2O94777 84 aa12.19□□□□□ -0.46
GTF3A-202ENST00000419181 IGKV2D-28P01615 120 aa12.19□□□□□ -0.46
GTF3A-202ENST00000419181 HERV-K104P63124 156 aa12.19□□□□□ -0.46
GTF3A-202ENST00000419181 NDUFA12Q9UI09 145 aa12.19□□□□□ -0.46
GTF3A-202ENST00000419181 IGLV1-50A0A075B6I6 118 aa12.18□□□□□ -0.46
GTF3A-202ENST00000419181 SMIM13P0DJ93 91 aa12.18□□□□□ -0.46
GTF3A-202ENST00000419181 PMCHL2Q9BQD1 86 aa12.18□□□□□ -0.46
GTF3A-202ENST00000419181 TSPEAR-AS2P59090 65 aa12.17□□□□□ -0.46
GTF3A-202ENST00000419181 MAP1LC3CQ9BXW4 147 aa12.17□□□□□ -0.46
GTF3A-202ENST00000419181 MYMXA0A1B0GTQ4 84 aa12.16□□□□□ -0.46
GTF3A-202ENST00000419181 LEPROTO15243 131 aa12.16□□□□□ -0.46
GTF3A-202ENST00000419181 MEIG1Q5JSS6 88 aa12.16□□□□□ -0.46
GTF3A-202ENST00000419181 KRTAP13-1Q8IUC0 172 aa12.16□□□□□ -0.46
GTF3A-202ENST00000419181 IGKCP01834 107 aa12.15□□□□□ -0.46
GTF3A-202ENST00000419181 PLEKHB2Q96CS7 222 aa12.15□□□□□ -0.46
GTF3A-202ENST00000419181 ATP6V1G1O75348 118 aa12.14□□□□□ -0.47
GTF3A-202ENST00000419181 MIR7-3HGQ8N6C7 128 aa12.14□□□□□ -0.47
GTF3A-202ENST00000419181 LINC00587B1AMM8 73 aa12.13□□□□□ -0.47
GTF3A-202ENST00000419181 HERVK_113P61574 105 aa12.13□□□□□ -0.47
GTF3A-202ENST00000419181 UBR4Q5T4S7 5183 aa12.12□□□□□ -0.47
GTF3A-202ENST00000419181 TMEM238C9JI98 176 aa12.12□□□□□ -0.47
GTF3A-202ENST00000419181 J3QQQ9 107 aa12.12□□□□□ -0.47
GTF3A-202ENST00000419181 UBE2AP49459 152 aa12.12□□□□□ -0.47
GTF3A-202ENST00000419181 TMEM126AQ9H061 195 aa12.12□□□□□ -0.47
GTF3A-202ENST00000419181 RPL13AP40429 203 aaKnown RBP12.11□□□□□ -0.47
GTF3A-202ENST00000419181 SYS1-DBNDD2H3BUS1 97 aa12.1□□□□□ -0.47
GTF3A-202ENST00000419181 M0R378 163 aa12.1□□□□□ -0.47
GTF3A-202ENST00000419181 BOD1L2Q8IYS8 172 aa12.1□□□□□ -0.47
GTF3A-202ENST00000419181 NMUP48645 174 aa12.09□□□□□ -0.47
GTF3A-202ENST00000419181 PRLHP81277 87 aa12.08□□□□□ -0.48
GTF3A-202ENST00000419181 LGALS3P17931 250 aaKnown RBP12.07□□□□□ -0.48
GTF3A-202ENST00000419181 COA6Q5JTJ3 125 aaKnown RBP12.07□□□□□ -0.48
GTF3A-202ENST00000419181 FAM19A1Q7Z5A9 133 aa12.07□□□□□ -0.48
GTF3A-202ENST00000419181 A0A087X002 238 aa12.05□□□□□ -0.48
GTF3A-202ENST00000419181 IGKV2D-26A0A0A0MRZ7 120 aa12.05□□□□□ -0.48
GTF3A-202ENST00000419181 LOC107984156A0A0G2JMH3 177 aa12.05□□□□□ -0.48
GTF3A-202ENST00000419181 E9PLD3 99 aa12.05□□□□□ -0.48
GTF3A-202ENST00000419181 LCE2DQ5TA82 110 aaPredicted RBP12.05□□□□□ -0.48
GTF3A-202ENST00000419181 LINC01545Q5VT33 79 aa12.05□□□□□ -0.48
GTF3A-202ENST00000419181 ARL17AQ8IVW1 177 aa12.05□□□□□ -0.48
GTF3A-202ENST00000419181 DAND5Q8N907 189 aa12.05□□□□□ -0.48
GTF3A-202ENST00000419181 PET117Q6UWS5 81 aa12.04□□□□□ -0.48
GTF3A-202ENST00000419181 LRP2P98164 4655 aa12.03□□□□□ -0.48
GTF3A-202ENST00000419181 NCR3O14931 201 aa12.03□□□□□ -0.48
GTF3A-202ENST00000419181 CRYGAP11844 174 aa12.02□□□□□ -0.49
GTF3A-202ENST00000419181 ANAPC11Q9NYG5 84 aa12.01□□□□□ -0.49
GTF3A-202ENST00000419181 PRYO14603 147 aa12□□□□□ -0.49
GTF3A-202ENST00000419181 C3orf79P0CE67 100 aa12□□□□□ -0.49
GTF3A-202ENST00000419181 A0A0J9YXY3 114 aa11.99□□□□□ -0.49
GTF3A-202ENST00000419181 KCNQ1DNQ9H478 68 aa11.99□□□□□ -0.49
GTF3A-202ENST00000419181 TRBV10-3A0A0K0K1G6 114 aa11.98□□□□□ -0.49
GTF3A-202ENST00000419181 SPRR1AP35321 89 aa11.98□□□□□ -0.49
GTF3A-202ENST00000419181 FAM229BQ4G0N7 80 aa11.98□□□□□ -0.49
GTF3A-202ENST00000419181 MIEN1Q9BRT3 115 aa11.97□□□□□ -0.49
GTF3A-202ENST00000419181 TRBV10-2A0A0K0K1G8 114 aa11.96□□□□□ -0.49
GTF3A-202ENST00000419181 KRTAP13-2Q52LG2 175 aa11.96□□□□□ -0.49
GTF3A-202ENST00000419181 ADAMTSL4-AS1Q5T5F5 129 aa11.96□□□□□ -0.49
GTF3A-202ENST00000419181 LINC00337Q8N6G1 96 aa11.96□□□□□ -0.49
GTF3A-202ENST00000419181 TYMSOSQ8TAI1 123 aa11.96□□□□□ -0.49
GTF3A-202ENST00000419181 HIGD2AQ9BW72 106 aa11.96□□□□□ -0.49
GTF3A-202ENST00000419181 KRTAP4-16G5E9R7 235 aaPredicted RBP11.95□□□□□ -0.5
GTF3A-202ENST00000419181 KRTDAPP60985 99 aa11.95□□□□□ -0.5
GTF3A-202ENST00000419181 SPANXB1Q9NS25 103 aaPredicted RBP11.95□□□□□ -0.5
GTF3A-202ENST00000419181 NDUFC2O95298 119 aa11.94□□□□□ -0.5
GTF3A-202ENST00000419181 SOSTDC1Q6X4U4 206 aa11.94□□□□□ -0.5
GTF3A-202ENST00000419181 EIF4EBP3O60516 100 aaPredicted RBP11.93□□□□□ -0.5
GTF3A-202ENST00000419181 S100A1P23297 94 aa11.92□□□□□ -0.5
GTF3A-202ENST00000419181 DDTP30046 118 aa11.92□□□□□ -0.5
GTF3A-202ENST00000419181 LITAFQ99732 161 aa11.92□□□□□ -0.5
GTF3A-202ENST00000419181 NPC2P61916 151 aa11.91□□□□□ -0.5
GTF3A-202ENST00000419181 S100A12P80511 92 aa11.91□□□□□ -0.5
GTF3A-202ENST00000419181 ETDCA0A1B0GVM5 59 aa11.9□□□□□ -0.5
GTF3A-202ENST00000419181 TIMM17BO60830 172 aa11.9□□□□□ -0.5
GTF3A-202ENST00000419181 C20orf202A1L168 122 aa11.89□□□□□ -0.51
GTF3A-202ENST00000419181 ZNF815PA8K554 130 aa11.89□□□□□ -0.51
GTF3A-202ENST00000419181 IGLV6-57P01721 117 aa11.89□□□□□ -0.51
GTF3A-202ENST00000419181 SPRR4Q96PI1 79 aa11.89□□□□□ -0.51
GTF3A-202ENST00000419181 TTTY13Q9BZ97 58 aa11.89□□□□□ -0.51
GTF3A-202ENST00000419181 TSPAN13O95857 204 aa11.87□□□□□ -0.51
GTF3A-202ENST00000419181 B5MCH6 92 aa11.86□□□□□ -0.51
GTF3A-202ENST00000419181 S100A7L2Q5SY68 101 aa11.86□□□□□ -0.51
GTF3A-202ENST00000419181 LINC00308Q8TCZ7 52 aa11.86□□□□□ -0.51
GTF3A-202ENST00000419181 SMCR5Q8TEV8 140 aa11.86□□□□□ -0.51
GTF3A-202ENST00000419181 ZNF706Q9Y5V0 76 aaPredicted RBP11.86□□□□□ -0.51
GTF3A-202ENST00000419181 LPAP08519 4548 aa11.84□□□□□ -0.51
GTF3A-202ENST00000419181 SPANXCQ9NY87 97 aa11.84□□□□□ -0.51
GTF3A-202ENST00000419181 ANKRD39Q53RE8 183 aa11.83□□□□□ -0.52
GTF3A-202ENST00000419181 ATOH7Q8N100 152 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms