RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 C9orf129Q5T035 196 aaKnown RBP9.11□□□□□ -0.95
SF3B1-204ENST00000414963 XAGE1AQ9HD64 81 aa9.11□□□□□ -0.95
SF3B1-204ENST00000414963 LINC00474Q9P2X8 69 aa9.11□□□□□ -0.95
SF3B1-204ENST00000414963 CTAG1AP78358 180 aa9.1□□□□□ -0.95
SF3B1-204ENST00000414963 GAGE2BQ13066 116 aa9.1□□□□□ -0.95
SF3B1-204ENST00000414963 PLA2G2DQ9UNK4 145 aa9.1□□□□□ -0.95
SF3B1-204ENST00000414963 CEND1Q8N111 149 aa9.09□□□□□ -0.95
SF3B1-204ENST00000414963 NDUFC2O95298 119 aa9.08□□□□□ -0.96
SF3B1-204ENST00000414963 RPL24P83731 157 aaKnown RBP9.08□□□□□ -0.96
SF3B1-204ENST00000414963 NPC2P61916 151 aa9.07□□□□□ -0.96
SF3B1-204ENST00000414963 IGKV2-24A0A0C4DH68 120 aa9.06□□□□□ -0.96
SF3B1-204ENST00000414963 EPM2AB3EWF7 344 aa9.06□□□□□ -0.96
SF3B1-204ENST00000414963 CHTF8P0CG12 524 aa9.06□□□□□ -0.96
SF3B1-204ENST00000414963 KRTAP10-1P60331 282 aa9.06□□□□□ -0.96
SF3B1-204ENST00000414963 SPACA4Q8TDM5 124 aa9.06□□□□□ -0.96
SF3B1-204ENST00000414963 IGLV5-37A0A075B6J1 123 aa9.05□□□□□ -0.96
SF3B1-204ENST00000414963 A4D1N5 150 aa9.05□□□□□ -0.96
SF3B1-204ENST00000414963 PANO1I0J062 215 aa9.05□□□□□ -0.96
SF3B1-204ENST00000414963 VPREB1P12018 145 aa9.05□□□□□ -0.96
SF3B1-204ENST00000414963 Q6ZSA8 131 aa9.05□□□□□ -0.96
SF3B1-204ENST00000414963 Q8NDZ9 215 aa9.05□□□□□ -0.96
SF3B1-204ENST00000414963 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.05□□□□□ -0.96
SF3B1-204ENST00000414963 M0R143 59 aa9.04□□□□□ -0.96
SF3B1-204ENST00000414963 FXYD2P54710 66 aa9.04□□□□□ -0.96
SF3B1-204ENST00000414963 BVES-AS1Q5T3Y7 98 aa9.04□□□□□ -0.96
SF3B1-204ENST00000414963 KRTAP7-1Q8IUC3 87 aa9.04□□□□□ -0.96
SF3B1-204ENST00000414963 DNAH5Q8TE73 4624 aa9.04□□□□□ -0.96
SF3B1-204ENST00000414963 TRBV10-2A0A0K0K1G8 114 aa9.03□□□□□ -0.96
SF3B1-204ENST00000414963 TMEM238LA0A1B0GVL6 79 aa9.03□□□□□ -0.96
SF3B1-204ENST00000414963 A0A1W2PNN7 141 aa9.03□□□□□ -0.96
SF3B1-204ENST00000414963 A6NJY4 79 aa9.03□□□□□ -0.96
SF3B1-204ENST00000414963 PCP4L1A6NKN8 68 aa9.03□□□□□ -0.96
SF3B1-204ENST00000414963 SERTAD4-AS1Q5TG53 156 aa9.03□□□□□ -0.96
SF3B1-204ENST00000414963 IGKV2-28A0A075B6P5 120 aa9.02□□□□□ -0.97
SF3B1-204ENST00000414963 FAM168BA1KXE4 195 aa9.02□□□□□ -0.97
SF3B1-204ENST00000414963 IGKV2D-28P01615 120 aa9.02□□□□□ -0.97
SF3B1-204ENST00000414963 HINT1P49773 126 aaPredicted RBP9.02□□□□□ -0.97
SF3B1-204ENST00000414963 A0A1B0GWB2 263 aa9.01□□□□□ -0.97
SF3B1-204ENST00000414963 PRR3P79522 188 aaKnown RBP9.01□□□□□ -0.97
SF3B1-204ENST00000414963 PLAC8Q9NZF1 115 aa9.01□□□□□ -0.97
SF3B1-204ENST00000414963 FAM30AQ9NZY2 134 aa9.01□□□□□ -0.97
SF3B1-204ENST00000414963 A0A087WYN8 130 aa9□□□□□ -0.97
SF3B1-204ENST00000414963 M0R378 163 aa9□□□□□ -0.97
SF3B1-204ENST00000414963 CFC1BP0CG36 223 aa9□□□□□ -0.97
SF3B1-204ENST00000414963 CFC1P0CG37 223 aa9□□□□□ -0.97
SF3B1-204ENST00000414963 DPH3Q96FX2 82 aa9□□□□□ -0.97
SF3B1-204ENST00000414963 C22orf24Q9Y442 160 aa9□□□□□ -0.97
SF3B1-204ENST00000414963 A0A0B4J2C4 111 aa8.99□□□□□ -0.97
SF3B1-204ENST00000414963 DNAH8Q96JB1 4490 aa8.99□□□□□ -0.97
SF3B1-204ENST00000414963 TRAV13-2A0A0B4J235 113 aa8.98□□□□□ -0.97
SF3B1-204ENST00000414963 FAM19A5Q7Z5A7 132 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-204ENST00000414963 NKAPP1Q8N9T2 125 aa8.98□□□□□ -0.97
SF3B1-204ENST00000414963 PKHD1P08F94 4074 aa8.98□□□□□ -0.97
SF3B1-204ENST00000414963 LBHQ53QV2 105 aaPredicted RBP8.97□□□□□ -0.97
SF3B1-204ENST00000414963 MRPL55Q7Z7F7 128 aaKnown RBP8.97□□□□□ -0.97
SF3B1-204ENST00000414963 LINC00337Q8N6G1 96 aa8.97□□□□□ -0.97
SF3B1-204ENST00000414963 A6NDN8 102 aa8.96□□□□□ -0.98
SF3B1-204ENST00000414963 M0QXV9 152 aa8.96□□□□□ -0.98
SF3B1-204ENST00000414963 NCR3O14931 201 aa8.96□□□□□ -0.98
SF3B1-204ENST00000414963 IGLV6-57P01721 117 aa8.96□□□□□ -0.98
SF3B1-204ENST00000414963 C7orf33Q8WU49 177 aa8.96□□□□□ -0.98
SF3B1-204ENST00000414963 NHP2Q9NX24 153 aaKnown RBP8.96□□□□□ -0.98
SF3B1-204ENST00000414963 DYNC1H1Q14204 4646 aaKnown RBP8.96□□□□□ -0.98
SF3B1-204ENST00000414963 CIRBP-AS1Q8TBR5 109 aa8.95□□□□□ -0.98
SF3B1-204ENST00000414963 RAB37Q96AX2 223 aa8.95□□□□□ -0.98
SF3B1-204ENST00000414963 LINC00167Q96N53 147 aa8.95□□□□□ -0.98
SF3B1-204ENST00000414963 SNHG12Q9BXW3 62 aa8.95□□□□□ -0.98
SF3B1-204ENST00000414963 TMEM126AQ9H061 195 aa8.95□□□□□ -0.98
SF3B1-204ENST00000414963 PRO1854Q9UHT4 67 aa8.95□□□□□ -0.98
SF3B1-204ENST00000414963 LRP1BQ9NZR2 4599 aa8.93□□□□□ -0.98
SF3B1-204ENST00000414963 IGLV1-50A0A075B6I6 118 aa8.93□□□□□ -0.98
SF3B1-204ENST00000414963 TRBV10-3A0A0K0K1G6 114 aa8.93□□□□□ -0.98
SF3B1-204ENST00000414963 BATFQ16520 125 aa8.93□□□□□ -0.98
SF3B1-204ENST00000414963 S100A7L2Q5SY68 101 aa8.93□□□□□ -0.98
SF3B1-204ENST00000414963 SCXQ7RTU7 201 aa8.93□□□□□ -0.98
SF3B1-204ENST00000414963 K7ERJ3 54 aa8.92□□□□□ -0.98
SF3B1-204ENST00000414963 PHF5AQ7RTV0 110 aaKnown RBP8.92□□□□□ -0.98
SF3B1-204ENST00000414963 OR13C6PQ8NH95 151 aa8.92□□□□□ -0.98
SF3B1-204ENST00000414963 CBY1Q9Y3M2 126 aa8.92□□□□□ -0.98
SF3B1-204ENST00000414963 GAGE10A6NGK3 116 aa8.91□□□□□ -0.98
SF3B1-204ENST00000414963 RPL13AP40429 203 aaKnown RBP8.91□□□□□ -0.98
SF3B1-204ENST00000414963 KCNQ1DNQ9H478 68 aa8.91□□□□□ -0.98
SF3B1-204ENST00000414963 XGP55808 180 aa8.9□□□□□ -0.98
SF3B1-204ENST00000414963 RPL37AP8A6NKH3 93 aa8.89□□□□□ -0.99
SF3B1-204ENST00000414963 COL5A1-AS1Q5SY13 56 aa8.88□□□□□ -0.99
SF3B1-204ENST00000414963 SMIM11BQ8TCY0 68 aa8.88□□□□□ -0.99
SF3B1-204ENST00000414963 TRAV23DV6A0A075B6W5 121 aa8.87□□□□□ -0.99
SF3B1-204ENST00000414963 PRYO14603 147 aa8.87□□□□□ -0.99
SF3B1-204ENST00000414963 RPL28P46779 137 aaKnown RBP8.87□□□□□ -0.99
SF3B1-204ENST00000414963 KRTAP11-1Q8IUC1 163 aa8.87□□□□□ -0.99
SF3B1-204ENST00000414963 TSPAN13O95857 204 aa8.86□□□□□ -0.99
SF3B1-204ENST00000414963 SPRR1AP35321 89 aa8.86□□□□□ -0.99
SF3B1-204ENST00000414963 UBE2BP63146 152 aa8.86□□□□□ -0.99
SF3B1-204ENST00000414963 H7C2G1 150 aa8.85□□□□□ -0.99
SF3B1-204ENST00000414963 TAX1BP3O14907 124 aa8.85□□□□□ -0.99
SF3B1-204ENST00000414963 ZNF73O43830 326 aaPredicted RBP8.85□□□□□ -0.99
SF3B1-204ENST00000414963 CDK2AP2O75956 126 aa8.85□□□□□ -0.99
SF3B1-204ENST00000414963 TRBV7-6A0A0J9YX20 115 aa8.84□□□□□ -0.99
SF3B1-204ENST00000414963 KRTAP4-16G5E9R7 235 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-204ENST00000414963 HAMPP81172 84 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms