RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.33□□□□□ -1.72
VPS41-204ENST00000413141 CNBPP62633 177 aaKnown RBP4.33□□□□□ -1.72
VPS41-204ENST00000413141 RNF151Q2KHN1 245 aa4.33□□□□□ -1.72
VPS41-204ENST00000413141 C1orf134Q5TEV5 83 aa4.33□□□□□ -1.72
VPS41-204ENST00000413141 SND1-IT1Q9HBX3 110 aa4.33□□□□□ -1.72
VPS41-204ENST00000413141 A0A0B4J2C4 111 aa4.32□□□□□ -1.72
VPS41-204ENST00000413141 LOC107984156A0A0G2JMH3 177 aa4.32□□□□□ -1.72
VPS41-204ENST00000413141 NDUFC2-KCTD14E9PQ53 114 aa4.32□□□□□ -1.72
VPS41-204ENST00000413141 TLX1NBP0CAT3 122 aa4.32□□□□□ -1.72
VPS41-204ENST00000413141 CFC1BP0CG36 223 aa4.32□□□□□ -1.72
VPS41-204ENST00000413141 CFC1P0CG37 223 aa4.32□□□□□ -1.72
VPS41-204ENST00000413141 ARL17AQ8IVW1 177 aa4.32□□□□□ -1.72
VPS41-204ENST00000413141 Q8N814 137 aa4.32□□□□□ -1.72
VPS41-204ENST00000413141 DNAH2Q9P225 4427 aa4.31□□□□□ -1.72
VPS41-204ENST00000413141 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.31□□□□□ -1.72
VPS41-204ENST00000413141 A0A087WTM6 91 aa4.31□□□□□ -1.72
VPS41-204ENST00000413141 LCE6AA0A183 80 aa4.31□□□□□ -1.72
VPS41-204ENST00000413141 TAX1BP3O14907 124 aa4.31□□□□□ -1.72
VPS41-204ENST00000413141 Q6ZRP5 223 aa4.31□□□□□ -1.72
VPS41-204ENST00000413141 IGKV2-28A0A075B6P5 120 aa4.3□□□□□ -1.72
VPS41-204ENST00000413141 NDUFC2O95298 119 aa4.3□□□□□ -1.72
VPS41-204ENST00000413141 IGKV2D-28P01615 120 aa4.3□□□□□ -1.72
VPS41-204ENST00000413141 RPL18AQ02543 176 aaKnown RBP4.3□□□□□ -1.72
VPS41-204ENST00000413141 Q8NDZ9 215 aa4.3□□□□□ -1.72
VPS41-204ENST00000413141 RAB37Q96AX2 223 aa4.3□□□□□ -1.72
VPS41-204ENST00000413141 XAGE1AQ9HD64 81 aa4.3□□□□□ -1.72
VPS41-204ENST00000413141 LOC107984640A0A0U1RRK4 108 aa4.29□□□□□ -1.72
VPS41-204ENST00000413141 RTL8CO15255 209 aa4.29□□□□□ -1.72
VPS41-204ENST00000413141 TSPAN13O95857 204 aa4.29□□□□□ -1.72
VPS41-204ENST00000413141 GAGE2EQ4V326 116 aa4.29□□□□□ -1.72
VPS41-204ENST00000413141 C9orf129Q5T035 196 aaKnown RBP4.29□□□□□ -1.72
VPS41-204ENST00000413141 GAGE2DQ9UEU5 116 aa4.29□□□□□ -1.72
VPS41-204ENST00000413141 PRO1854Q9UHT4 67 aa4.29□□□□□ -1.72
VPS41-204ENST00000413141 HYDINQ4G0P3 5121 aa4.29□□□□□ -1.72
VPS41-204ENST00000413141 FRAS1Q86XX4 4008 aa4.28□□□□□ -1.72
VPS41-204ENST00000413141 C9orf118A6NHY6 69 aa4.28□□□□□ -1.72
VPS41-204ENST00000413141 NCR3O14931 201 aa4.28□□□□□ -1.72
VPS41-204ENST00000413141 RPL13AP40429 203 aaKnown RBP4.28□□□□□ -1.72
VPS41-204ENST00000413141 LINC00337Q8N6G1 96 aa4.28□□□□□ -1.72
VPS41-204ENST00000413141 KRTAP4-12Q9BQ66 201 aa4.28□□□□□ -1.72
VPS41-204ENST00000413141 NAA38Q9BRA0 125 aaKnown RBP4.28□□□□□ -1.72
VPS41-204ENST00000413141 A0A096LNI7 61 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 TRAV13-2A0A0B4J235 113 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 C16orf90A8MZG2 172 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 H3BUT2 72 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 VPREB1P12018 145 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 GAGE2BQ13066 116 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 Q1RN00 199 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 C9orf163Q8N9P6 203 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 PKIGQ9Y2B9 76 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 SACSQ9NZJ4 4579 aa4.27□□□□□ -1.73
VPS41-204ENST00000413141 RYR2Q92736 4967 aa4.26□□□□□ -1.73
VPS41-204ENST00000413141 TRBV10-2A0A0K0K1G8 114 aa4.26□□□□□ -1.73
VPS41-204ENST00000413141 A0A1B0GV90 55 aa4.26□□□□□ -1.73
VPS41-204ENST00000413141 A0A1W2PPM0 123 aa4.26□□□□□ -1.73
VPS41-204ENST00000413141 H7C2G1 150 aa4.26□□□□□ -1.73
VPS41-204ENST00000413141 PRR3P79522 188 aaKnown RBP4.26□□□□□ -1.73
VPS41-204ENST00000413141 LINC01620Q4KN68 170 aa4.26□□□□□ -1.73
VPS41-204ENST00000413141 SERTAD4-AS1Q5TG53 156 aa4.26□□□□□ -1.73
VPS41-204ENST00000413141 DNAH17Q9UFH2 4485 aa4.26□□□□□ -1.73
VPS41-204ENST00000413141 IGLV5-37A0A075B6J1 123 aa4.25□□□□□ -1.73
VPS41-204ENST00000413141 IGLV5-52A0A0A0MRZ9 124 aa4.25□□□□□ -1.73
VPS41-204ENST00000413141 IGKV2-24A0A0C4DH68 120 aa4.25□□□□□ -1.73
VPS41-204ENST00000413141 FAM168BA1KXE4 195 aa4.25□□□□□ -1.73
VPS41-204ENST00000413141 TRIAP1O43715 76 aa4.25□□□□□ -1.73
VPS41-204ENST00000413141 FUSP35637 526 aaKnown RBP eCLIP4.25□□□□□ -1.73
VPS41-204ENST00000413141 SDIM1Q6ZPB5 146 aa4.25□□□□□ -1.73
VPS41-204ENST00000413141 PLA2G2DQ9UNK4 145 aa4.25□□□□□ -1.73
VPS41-204ENST00000413141 HECTD4Q9Y4D8 3996 aa4.25□□□□□ -1.73
VPS41-204ENST00000413141 KMT2CQ8NEZ4 4911 aaKnown RBP4.25□□□□□ -1.73
VPS41-204ENST00000413141 IGLV6-57P01721 117 aa4.24□□□□□ -1.73
VPS41-204ENST00000413141 CHTF8P0CG12 524 aa4.24□□□□□ -1.73
VPS41-204ENST00000413141 FABP2P12104 132 aa4.24□□□□□ -1.73
VPS41-204ENST00000413141 S100A7L2Q5SY68 101 aa4.24□□□□□ -1.73
VPS41-204ENST00000413141 FAM19A5Q7Z5A7 132 aaPredicted RBP4.24□□□□□ -1.73
VPS41-204ENST00000413141 KRTAP7-1Q8IUC3 87 aa4.24□□□□□ -1.73
VPS41-204ENST00000413141 NKAPP1Q8N9T2 125 aa4.24□□□□□ -1.73
VPS41-204ENST00000413141 OR13C6PQ8NH95 151 aa4.24□□□□□ -1.73
VPS41-204ENST00000413141 TMEM126AQ9H061 195 aa4.24□□□□□ -1.73
VPS41-204ENST00000413141 FAT2Q9NYQ8 4349 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 TRBV10-3A0A0K0K1G6 114 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 M0R378 163 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 RPL28P46779 137 aaKnown RBP4.23□□□□□ -1.73
VPS41-204ENST00000413141 PSMB2P49721 201 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 KRTAP10-2P60368 255 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 VAMP3Q15836 100 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 LYRM7Q5U5X0 104 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 SMIM11BQ8TCY0 68 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 SPACA4Q8TDM5 124 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 C7orf33Q8WU49 177 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 LINC00474Q9P2X8 69 aa4.23□□□□□ -1.73
VPS41-204ENST00000413141 TRAV23DV6A0A075B6W5 121 aa4.22□□□□□ -1.73
VPS41-204ENST00000413141 PANO1I0J062 215 aa4.22□□□□□ -1.73
VPS41-204ENST00000413141 K7EP34 96 aa4.22□□□□□ -1.73
VPS41-204ENST00000413141 M0QXV9 152 aa4.22□□□□□ -1.73
VPS41-204ENST00000413141 LINC00336Q6ZUF6 198 aa4.22□□□□□ -1.73
VPS41-204ENST00000413141 SPCS1Q9Y6A9 102 aa4.22□□□□□ -1.73
VPS41-204ENST00000413141 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.22□□□□□ -1.73
VPS41-204ENST00000413141 DNAH11Q96DT5 4516 aa4.22□□□□□ -1.73
VPS41-204ENST00000413141 A0A1W2PNN7 141 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms