RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 Q8NDZ9 215 aa13.09□□□□□ -0.31
MSH6-202ENST00000411819 LINC00158P58513 81 aa13.08□□□□□ -0.32
MSH6-202ENST00000411819 FAM229BQ4G0N7 80 aa13.08□□□□□ -0.32
MSH6-202ENST00000411819 A0A0U1RRA0 63 aa13.07□□□□□ -0.32
MSH6-202ENST00000411819 M0R378 163 aa13.06□□□□□ -0.32
MSH6-202ENST00000411819 IGKV2D-26A0A0A0MRZ7 120 aa13.05□□□□□ -0.32
MSH6-202ENST00000411819 IFI27L1Q96BM0 104 aa13.05□□□□□ -0.32
MSH6-202ENST00000411819 CHCHD1Q96BP2 118 aaKnown RBP13.05□□□□□ -0.32
MSH6-202ENST00000411819 TMEM223A0PJW6 202 aa13.04□□□□□ -0.32
MSH6-202ENST00000411819 LINC00304Q8N9R0 145 aa13.04□□□□□ -0.32
MSH6-202ENST00000411819 TRAV12-1A0A0B4J245 112 aa13.03□□□□□ -0.32
MSH6-202ENST00000411819 ATP6V1G1O75348 118 aa13.02□□□□□ -0.33
MSH6-202ENST00000411819 CBLN2Q8IUK8 224 aa13.02□□□□□ -0.33
MSH6-202ENST00000411819 MEIG1Q5JSS6 88 aa13.01□□□□□ -0.33
MSH6-202ENST00000411819 YPEL4Q96NS1 127 aa13.01□□□□□ -0.33
MSH6-202ENST00000411819 RETNLBQ9BQ08 111 aa13.01□□□□□ -0.33
MSH6-202ENST00000411819 HIGD2AQ9BW72 106 aa13.01□□□□□ -0.33
MSH6-202ENST00000411819 SMIM13P0DJ93 91 aa12.99□□□□□ -0.33
MSH6-202ENST00000411819 HSBP1O75506 76 aa12.98□□□□□ -0.33
MSH6-202ENST00000411819 PLEKHB2Q96CS7 222 aa12.98□□□□□ -0.33
MSH6-202ENST00000411819 H0Y8G0 127 aa12.97□□□□□ -0.33
MSH6-202ENST00000411819 FAM19A2Q8N3H0 131 aa12.97□□□□□ -0.33
MSH6-202ENST00000411819 BOD1L2Q8IYS8 172 aa12.96□□□□□ -0.33
MSH6-202ENST00000411819 MUC2Q02817 5179 aa12.96□□□□□ -0.34
MSH6-202ENST00000411819 NCR3O14931 201 aa12.95□□□□□ -0.34
MSH6-202ENST00000411819 C3orf22Q8N5N4 141 aa12.95□□□□□ -0.34
MSH6-202ENST00000411819 MIR7-3HGQ8N6C7 128 aa12.95□□□□□ -0.34
MSH6-202ENST00000411819 HERV-K104P63124 156 aa12.94□□□□□ -0.34
MSH6-202ENST00000411819 NDUFA12Q9UI09 145 aa12.93□□□□□ -0.34
MSH6-202ENST00000411819 PRYO14603 147 aa12.92□□□□□ -0.34
MSH6-202ENST00000411819 SPRR4Q96PI1 79 aa12.91□□□□□ -0.34
MSH6-202ENST00000411819 MYMXA0A1B0GTQ4 84 aa12.9□□□□□ -0.34
MSH6-202ENST00000411819 ZNF706Q9Y5V0 76 aaPredicted RBP12.9□□□□□ -0.34
MSH6-202ENST00000411819 LINC00587B1AMM8 73 aa12.89□□□□□ -0.35
MSH6-202ENST00000411819 MAP1LC3CQ9BXW4 147 aa12.89□□□□□ -0.35
MSH6-202ENST00000411819 A0A0U1RQV1 116 aa12.88□□□□□ -0.35
MSH6-202ENST00000411819 LEPROTL1O95214 131 aa12.88□□□□□ -0.35
MSH6-202ENST00000411819 TRGC2P03986 189 aa12.88□□□□□ -0.35
MSH6-202ENST00000411819 ETDCA0A1B0GVM5 59 aa12.87□□□□□ -0.35
MSH6-202ENST00000411819 SERF1AO75920 110 aa12.86□□□□□ -0.35
MSH6-202ENST00000411819 LINC00337Q8N6G1 96 aa12.86□□□□□ -0.35
MSH6-202ENST00000411819 IGLV7-46A0A075B6I9 117 aa12.85□□□□□ -0.35
MSH6-202ENST00000411819 TRBV10-3A0A0K0K1G6 114 aa12.85□□□□□ -0.35
MSH6-202ENST00000411819 TSPEAR-AS2P59090 65 aa12.85□□□□□ -0.35
MSH6-202ENST00000411819 CTAG1AP78358 180 aa12.85□□□□□ -0.35
MSH6-202ENST00000411819 CDIP1Q9H305 208 aa12.85□□□□□ -0.35
MSH6-202ENST00000411819 KCNQ1DNQ9H478 68 aa12.85□□□□□ -0.35
MSH6-202ENST00000411819 SPRR1AP35321 89 aa12.84□□□□□ -0.35
MSH6-202ENST00000411819 S100A12P80511 92 aa12.84□□□□□ -0.35
MSH6-202ENST00000411819 DAND5Q8N907 189 aa12.84□□□□□ -0.35
MSH6-202ENST00000411819 LEPROTO15243 131 aa12.83□□□□□ -0.36
MSH6-202ENST00000411819 TPRXLQ17RH7 258 aa12.83□□□□□ -0.36
MSH6-202ENST00000411819 PLNP26678 52 aa12.82□□□□□ -0.36
MSH6-202ENST00000411819 LINC00310P59036 64 aa12.82□□□□□ -0.36
MSH6-202ENST00000411819 SPAG11AQ6PDA7 123 aa12.82□□□□□ -0.36
MSH6-202ENST00000411819 SMCR5Q8TEV8 140 aa12.82□□□□□ -0.36
MSH6-202ENST00000411819 PPDPFQ9H3Y8 114 aa12.82□□□□□ -0.36
MSH6-202ENST00000411819 C4orf48Q5BLP8 95 aa12.81□□□□□ -0.36
MSH6-202ENST00000411819 FABP4P15090 132 aa12.8□□□□□ -0.36
MSH6-202ENST00000411819 HERVK_113P61574 105 aa12.8□□□□□ -0.36
MSH6-202ENST00000411819 PMCHL2Q9BQD1 86 aa12.8□□□□□ -0.36
MSH6-202ENST00000411819 HSPB8Q9UJY1 196 aa12.8□□□□□ -0.36
MSH6-202ENST00000411819 KRTAP4-16G5E9R7 235 aaPredicted RBP12.79□□□□□ -0.36
MSH6-202ENST00000411819 J3QQQ9 107 aa12.79□□□□□ -0.36
MSH6-202ENST00000411819 DPM2O94777 84 aa12.79□□□□□ -0.36
MSH6-202ENST00000411819 Q8NBF4 154 aa12.78□□□□□ -0.36
MSH6-202ENST00000411819 MIEN1Q9BRT3 115 aa12.78□□□□□ -0.36
MSH6-202ENST00000411819 LGALS3P17931 250 aaKnown RBP12.77□□□□□ -0.37
MSH6-202ENST00000411819 DDTP30046 118 aa12.77□□□□□ -0.37
MSH6-202ENST00000411819 IGKCP01834 107 aa12.75□□□□□ -0.37
MSH6-202ENST00000411819 NMUP48645 174 aa12.75□□□□□ -0.37
MSH6-202ENST00000411819 GAGE2AQ6NT46 116 aa12.75□□□□□ -0.37
MSH6-202ENST00000411819 MUC17Q685J3 4493 aa12.75□□□□□ -0.37
MSH6-202ENST00000411819 LOC107984156A0A0G2JMH3 177 aa12.74□□□□□ -0.37
MSH6-202ENST00000411819 TRBV10-2A0A0K0K1G8 114 aa12.74□□□□□ -0.37
MSH6-202ENST00000411819 B5MCH6 92 aa12.74□□□□□ -0.37
MSH6-202ENST00000411819 ARL17AQ8IVW1 177 aa12.74□□□□□ -0.37
MSH6-202ENST00000411819 SPANXB1Q9NS25 103 aaPredicted RBP12.74□□□□□ -0.37
MSH6-202ENST00000411819 LINC00483Q53H64 154 aa12.71□□□□□ -0.37
MSH6-202ENST00000411819 S100A7L2Q5SY68 101 aa12.71□□□□□ -0.37
MSH6-202ENST00000411819 IGLV9-49A0A0B4J1Y8 123 aa12.7□□□□□ -0.38
MSH6-202ENST00000411819 ERC2-IT1O76042 136 aa12.7□□□□□ -0.38
MSH6-202ENST00000411819 NPC2P61916 151 aa12.7□□□□□ -0.38
MSH6-202ENST00000411819 FP248Q71RG6 208 aaPredicted RBP12.7□□□□□ -0.38
MSH6-202ENST00000411819 MOBPQ13875 183 aa12.69□□□□□ -0.38
MSH6-202ENST00000411819 Q6ZRX8 168 aa12.69□□□□□ -0.38
MSH6-202ENST00000411819 FAT4Q6V0I7 4981 aa12.69□□□□□ -0.38
MSH6-202ENST00000411819 SPINK1P00995 79 aa12.68□□□□□ -0.38
MSH6-202ENST00000411819 SLC7A5P1Q8MH63 180 aa12.68□□□□□ -0.38
MSH6-202ENST00000411819 Q9BRP9 147 aa12.68□□□□□ -0.38
MSH6-202ENST00000411819 COLCA2A8K830 154 aa12.67□□□□□ -0.38
MSH6-202ENST00000411819 NDUFC2O95298 119 aa12.67□□□□□ -0.38
MSH6-202ENST00000411819 TRAV23DV6A0A075B6W5 121 aa12.66□□□□□ -0.38
MSH6-202ENST00000411819 IGLV6-57P01721 117 aa12.66□□□□□ -0.38
MSH6-202ENST00000411819 A0A0J9YXY3 114 aa12.64□□□□□ -0.39
MSH6-202ENST00000411819 SOSTDC1Q6X4U4 206 aa12.64□□□□□ -0.39
MSH6-202ENST00000411819 E9PLD3 99 aa12.63□□□□□ -0.39
MSH6-202ENST00000411819 JOSD1Q15040 202 aaPredicted RBP12.63□□□□□ -0.39
MSH6-202ENST00000411819 ADAMTSL4-AS1Q5T5F5 129 aa12.62□□□□□ -0.39
MSH6-202ENST00000411819 EIF4EBP3O60516 100 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms