RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 TSPEAR-AS2P59090 65 aa11.32□□□□□ -0.6
SF3A1-202ENST00000411423 TMEM238C9JI98 176 aa11.31□□□□□ -0.6
SF3A1-202ENST00000411423 RPL28P46779 137 aaKnown RBP11.31□□□□□ -0.6
SF3A1-202ENST00000411423 LINC00158P58513 81 aa11.31□□□□□ -0.6
SF3A1-202ENST00000411423 SFTA2Q6UW10 78 aa11.31□□□□□ -0.6
SF3A1-202ENST00000411423 RNF213Q63HN8 5207 aa11.3□□□□□ -0.6
SF3A1-202ENST00000411423 A0A087X002 238 aa11.3□□□□□ -0.6
SF3A1-202ENST00000411423 SMIM13P0DJ93 91 aa11.3□□□□□ -0.6
SF3A1-202ENST00000411423 ANAPC11Q9NYG5 84 aa11.3□□□□□ -0.6
SF3A1-202ENST00000411423 FABP4P15090 132 aa11.29□□□□□ -0.6
SF3A1-202ENST00000411423 PMCHL2Q9BQD1 86 aa11.29□□□□□ -0.6
SF3A1-202ENST00000411423 M0R378 163 aa11.28□□□□□ -0.6
SF3A1-202ENST00000411423 TMEM126AQ9H061 195 aa11.28□□□□□ -0.6
SF3A1-202ENST00000411423 UBE2AP49459 152 aa11.27□□□□□ -0.61
SF3A1-202ENST00000411423 PRLHP81277 87 aa11.27□□□□□ -0.61
SF3A1-202ENST00000411423 RPL24P83731 157 aaKnown RBP11.27□□□□□ -0.61
SF3A1-202ENST00000411423 NDUFA12Q9UI09 145 aa11.26□□□□□ -0.61
SF3A1-202ENST00000411423 RPL13AP40429 203 aaKnown RBP11.25□□□□□ -0.61
SF3A1-202ENST00000411423 MIR7-3HGQ8N6C7 128 aa11.25□□□□□ -0.61
SF3A1-202ENST00000411423 MEIG1Q5JSS6 88 aa11.24□□□□□ -0.61
SF3A1-202ENST00000411423 HSPB8Q9UJY1 196 aa11.24□□□□□ -0.61
SF3A1-202ENST00000411423 LEPROTO15243 131 aa11.23□□□□□ -0.61
SF3A1-202ENST00000411423 KRTAP13-2Q52LG2 175 aa11.23□□□□□ -0.61
SF3A1-202ENST00000411423 FAM19A1Q7Z5A9 133 aa11.23□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BKO60814 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BJP06899 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BOP23527 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BBP33778 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BDP58876 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BCP62807 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HERV-K104P63124 156 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST2H2BEQ16778 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BHQ93079 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BNQ99877 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 HIST1H2BMQ99879 126 aa11.22□□□□□ -0.61
SF3A1-202ENST00000411423 DPM2O94777 84 aa11.21□□□□□ -0.61
SF3A1-202ENST00000411423 PLNP26678 52 aa11.21□□□□□ -0.61
SF3A1-202ENST00000411423 MYMXA0A1B0GTQ4 84 aa11.2□□□□□ -0.62
SF3A1-202ENST00000411423 NCR3O14931 201 aa11.2□□□□□ -0.62
SF3A1-202ENST00000411423 IGKCP01834 107 aa11.2□□□□□ -0.62
SF3A1-202ENST00000411423 S100A1P23297 94 aa11.2□□□□□ -0.62
SF3A1-202ENST00000411423 BOD1L2Q8IYS8 172 aa11.2□□□□□ -0.62
SF3A1-202ENST00000411423 DAND5Q8N907 189 aa11.2□□□□□ -0.62
SF3A1-202ENST00000411423 J3QQQ9 107 aa11.19□□□□□ -0.62
SF3A1-202ENST00000411423 CRYGAP11844 174 aa11.19□□□□□ -0.62
SF3A1-202ENST00000411423 PLEKHB2Q96CS7 222 aa11.18□□□□□ -0.62
SF3A1-202ENST00000411423 ATP6V1G1O75348 118 aa11.17□□□□□ -0.62
SF3A1-202ENST00000411423 TYMSOSQ8TAI1 123 aa11.17□□□□□ -0.62
SF3A1-202ENST00000411423 TSPAN13O95857 204 aa11.16□□□□□ -0.62
SF3A1-202ENST00000411423 COA6Q5JTJ3 125 aaKnown RBP11.16□□□□□ -0.62
SF3A1-202ENST00000411423 MAP1LC3CQ9BXW4 147 aa11.16□□□□□ -0.62
SF3A1-202ENST00000411423 SPRR1AP35321 89 aa11.14□□□□□ -0.63
SF3A1-202ENST00000411423 LOC107984156A0A0G2JMH3 177 aa11.13□□□□□ -0.63
SF3A1-202ENST00000411423 LINC00587B1AMM8 73 aa11.13□□□□□ -0.63
SF3A1-202ENST00000411423 KRTAP4-16G5E9R7 235 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-202ENST00000411423 SYS1-DBNDD2H3BUS1 97 aa11.13□□□□□ -0.63
SF3A1-202ENST00000411423 HERVK_113P61574 105 aa11.13□□□□□ -0.63
SF3A1-202ENST00000411423 FAM229BQ4G0N7 80 aa11.13□□□□□ -0.63
SF3A1-202ENST00000411423 ARL17AQ8IVW1 177 aa11.13□□□□□ -0.63
SF3A1-202ENST00000411423 HIGD2AQ9BW72 106 aa11.13□□□□□ -0.63
SF3A1-202ENST00000411423 TRBV10-3A0A0K0K1G6 114 aa11.12□□□□□ -0.63
SF3A1-202ENST00000411423 PRYO14603 147 aa11.12□□□□□ -0.63
SF3A1-202ENST00000411423 EIF4EBP3O60516 100 aaPredicted RBP11.12□□□□□ -0.63
SF3A1-202ENST00000411423 LGALS3P17931 250 aaKnown RBP11.12□□□□□ -0.63
SF3A1-202ENST00000411423 KCNQ1DNQ9H478 68 aa11.12□□□□□ -0.63
SF3A1-202ENST00000411423 IGKV2D-26A0A0A0MRZ7 120 aa11.11□□□□□ -0.63
SF3A1-202ENST00000411423 E9PLD3 99 aa11.11□□□□□ -0.63
SF3A1-202ENST00000411423 SOSTDC1Q6X4U4 206 aa11.11□□□□□ -0.63
SF3A1-202ENST00000411423 NMUP48645 174 aa11.1□□□□□ -0.63
SF3A1-202ENST00000411423 PRR4Q16378 134 aa11.1□□□□□ -0.63
SF3A1-202ENST00000411423 ADAMTSL4-AS1Q5T5F5 129 aa11.1□□□□□ -0.63
SF3A1-202ENST00000411423 C3orf22Q8N5N4 141 aa11.1□□□□□ -0.63
SF3A1-202ENST00000411423 A0A0J9YXY3 114 aa11.09□□□□□ -0.63
SF3A1-202ENST00000411423 LINC01545Q5VT33 79 aa11.08□□□□□ -0.64
SF3A1-202ENST00000411423 LINC00337Q8N6G1 96 aa11.08□□□□□ -0.64
SF3A1-202ENST00000411423 SPRR4Q96PI1 79 aa11.08□□□□□ -0.64
SF3A1-202ENST00000411423 C3orf79P0CE67 100 aa11.06□□□□□ -0.64
SF3A1-202ENST00000411423 NPC2P61916 151 aa11.06□□□□□ -0.64
SF3A1-202ENST00000411423 SMCR5Q8TEV8 140 aa11.06□□□□□ -0.64
SF3A1-202ENST00000411423 LITAFQ99732 161 aa11.05□□□□□ -0.64
SF3A1-202ENST00000411423 TRBV10-2A0A0K0K1G8 114 aa11.04□□□□□ -0.64
SF3A1-202ENST00000411423 DDTP30046 118 aa11.04□□□□□ -0.64
SF3A1-202ENST00000411423 PET117Q6UWS5 81 aa11.04□□□□□ -0.64
SF3A1-202ENST00000411423 LINC00304Q8N9R0 145 aa11.04□□□□□ -0.64
SF3A1-202ENST00000411423 TTTY13Q9BZ97 58 aa11.04□□□□□ -0.64
SF3A1-202ENST00000411423 ETDCA0A1B0GVM5 59 aa11.03□□□□□ -0.64
SF3A1-202ENST00000411423 B5MCH6 92 aa11.03□□□□□ -0.64
SF3A1-202ENST00000411423 ERC2-IT1O76042 136 aa11.02□□□□□ -0.65
SF3A1-202ENST00000411423 NDUFC2O95298 119 aa11.02□□□□□ -0.65
SF3A1-202ENST00000411423 RETNLBQ9BQ08 111 aa11.02□□□□□ -0.65
SF3A1-202ENST00000411423 SPANXB1Q9NS25 103 aaPredicted RBP11.02□□□□□ -0.65
SF3A1-202ENST00000411423 IGLV6-57P01721 117 aa11.01□□□□□ -0.65
SF3A1-202ENST00000411423 Q9BRP9 147 aa11□□□□□ -0.65
SF3A1-202ENST00000411423 MIEN1Q9BRT3 115 aa11□□□□□ -0.65
SF3A1-202ENST00000411423 PPDPFQ9H3Y8 114 aa11□□□□□ -0.65
SF3A1-202ENST00000411423 KRTDAPP60985 99 aa10.98□□□□□ -0.65
SF3A1-202ENST00000411423 ZNF815PA8K554 130 aa10.96□□□□□ -0.65
SF3A1-202ENST00000411423 LINC00308Q8TCZ7 52 aa10.96□□□□□ -0.65
SF3A1-202ENST00000411423 ZNF706Q9Y5V0 76 aaPredicted RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms