RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 AMMECR1LQ6DCA0 310 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 TOMM6Q96B49 74 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 TRBV6-5A0A0K0K1A5 114 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 HINT1P49773 126 aaPredicted RBP4.11□□□□□ -1.75
USP40-202ENST00000409945 RPL39LQ96EH5 51 aaKnown RBP4.11□□□□□ -1.75
USP40-202ENST00000409945 SCGB3A1Q96QR1 104 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 KIR2DL4Q99706 377 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 TRAV8-4A0A0B4J246 113 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 I3L3M4 83 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 FGF6P10767 208 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 POLR2KP53803 58 aaKnown RBP4.11□□□□□ -1.75
USP40-202ENST00000409945 MPV17L2Q567V2 206 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 Q8N814 137 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 TMEM101Q96IK0 257 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 PKIGQ9Y2B9 76 aa4.11□□□□□ -1.75
USP40-202ENST00000409945 DNAH11Q96DT5 4516 aa4.1□□□□□ -1.75
USP40-202ENST00000409945 TRBV27A0A0K0K1C4 114 aa4.1□□□□□ -1.75
USP40-202ENST00000409945 SDHAF1A6NFY7 115 aa4.1□□□□□ -1.75
USP40-202ENST00000409945 F8VRH5 84 aa4.1□□□□□ -1.75
USP40-202ENST00000409945 SEC11AP67812 179 aa4.1□□□□□ -1.75
USP40-202ENST00000409945 CYSLTR1Q9Y271 337 aa4.1□□□□□ -1.75
USP40-202ENST00000409945 A0A1B0GWB2 263 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 NMUP48645 174 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 REG3AQ06141 175 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 BVES-AS1Q5T3Y7 98 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 NTM-AS1Q6ZSK4 140 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 C2orf91Q6ZV80 131 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 LINC00269Q8N2A0 174 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 ORAOV1Q8WV07 137 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 TMEM141Q96I45 108 aa4.09□□□□□ -1.75
USP40-202ENST00000409945 MRPL35Q9NZE8 188 aaKnown RBP4.09□□□□□ -1.75
USP40-202ENST00000409945 LRCOL1A6NCL2 159 aa4.09□□□□□ -1.76
USP40-202ENST00000409945 HSD52Q0P140 79 aa4.09□□□□□ -1.76
USP40-202ENST00000409945 TIMM17AQ99595 171 aa4.09□□□□□ -1.76
USP40-202ENST00000409945 HIGD1BQ9P298 99 aa4.09□□□□□ -1.76
USP40-202ENST00000409945 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.08□□□□□ -1.76
USP40-202ENST00000409945 A6NDN8 102 aa4.08□□□□□ -1.76
USP40-202ENST00000409945 LECT2O14960 151 aa4.08□□□□□ -1.76
USP40-202ENST00000409945 KRTAP10-5P60370 271 aa4.08□□□□□ -1.76
USP40-202ENST00000409945 KRTAP10-7P60409 375 aaPredicted RBP4.08□□□□□ -1.76
USP40-202ENST00000409945 RPL18AQ02543 176 aaKnown RBP4.08□□□□□ -1.76
USP40-202ENST00000409945 SPANXA1Q9NS26 97 aa4.08□□□□□ -1.76
USP40-202ENST00000409945 TP73-AS1Q9UF72 201 aa4.08□□□□□ -1.76
USP40-202ENST00000409945 DYNC1H1Q14204 4646 aaKnown RBP4.08□□□□□ -1.76
USP40-202ENST00000409945 IGIPA6NJ69 53 aa4.07□□□□□ -1.76
USP40-202ENST00000409945 CLPSL2Q6UWE3 100 aa4.07□□□□□ -1.76
USP40-202ENST00000409945 ENHOQ6UWT2 76 aa4.07□□□□□ -1.76
USP40-202ENST00000409945 PCP2Q8IVA1 136 aa4.07□□□□□ -1.76
USP40-202ENST00000409945 OR5A1Q8NGJ0 315 aa4.07□□□□□ -1.76
USP40-202ENST00000409945 PRR34Q9NV39 138 aa4.07□□□□□ -1.76
USP40-202ENST00000409945 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.07□□□□□ -1.76
USP40-202ENST00000409945 PMVKQ15126 192 aa4.07□□□□□ -1.76
USP40-202ENST00000409945 IGLV10-54A0A075B6I4 117 aa4.06□□□□□ -1.76
USP40-202ENST00000409945 IGKV2D-26A0A0A0MRZ7 120 aa4.06□□□□□ -1.76
USP40-202ENST00000409945 IGKV3OR2-268A0A0C4DH90 116 aa4.06□□□□□ -1.76
USP40-202ENST00000409945 HERVK_113P61574 105 aa4.06□□□□□ -1.76
USP40-202ENST00000409945 SS18Q15532 418 aa4.06□□□□□ -1.76
USP40-202ENST00000409945 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.05□□□□□ -1.76
USP40-202ENST00000409945 IGKV2-29A2NJV5 120 aaPredicted RBP4.05□□□□□ -1.76
USP40-202ENST00000409945 TAX1BP3O14907 124 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 CCL25O15444 150 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 C20orf203Q8NBC4 194 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 DEFB104AQ8WTQ1 72 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 CHAC1Q9BUX1 264 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 CST9LQ9H4G1 147 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 HERC2O95714 4834 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 KIAA1109Q2LD37 5005 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 IGLV4-60A0A075B6I1 120 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 FAM236DA0A1B0GTK5 79 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 H3BRM9 83 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 K7ERU9 68 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 FAM236CP0DP71 79 aa4.05□□□□□ -1.76
USP40-202ENST00000409945 RPL39P62891 51 aaKnown RBP4.05□□□□□ -1.76
USP40-202ENST00000409945 CHCHD10Q8WYQ3 142 aaPredicted RBP4.05□□□□□ -1.76
USP40-202ENST00000409945 MYMXA0A1B0GTQ4 84 aa4.04□□□□□ -1.76
USP40-202ENST00000409945 C11orf86A6NJI1 115 aa4.04□□□□□ -1.76
USP40-202ENST00000409945 FUSP35637 526 aaKnown RBP eCLIP4.04□□□□□ -1.76
USP40-202ENST00000409945 KRTAP10-1P60331 282 aa4.04□□□□□ -1.76
USP40-202ENST00000409945 MRPL55Q7Z7F7 128 aaKnown RBP4.04□□□□□ -1.76
USP40-202ENST00000409945 LRP1BQ9NZR2 4599 aa4.04□□□□□ -1.76
USP40-202ENST00000409945 IGLV4-69A0A075B6H9 119 aa4.03□□□□□ -1.76
USP40-202ENST00000409945 DNAH5Q8TE73 4624 aa4.03□□□□□ -1.76
USP40-202ENST00000409945 WFDC2Q14508 124 aa4.03□□□□□ -1.76
USP40-202ENST00000409945 OCIAD2Q56VL3 154 aa4.03□□□□□ -1.76
USP40-202ENST00000409945 DPH3Q96FX2 82 aa4.03□□□□□ -1.76
USP40-202ENST00000409945 TTTY13Q9BZ97 58 aa4.03□□□□□ -1.76
USP40-202ENST00000409945 RYR1P21817 5038 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 IGHV3-64A0A075B6Q5 118 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 ZNF815PA8K554 130 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 APOMO95445 188 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 KRTAP1-4P0C5Y4 121 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 SMIM13P0DJ93 91 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 XCL1P47992 114 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 PMAIP1Q13794 54 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 TMEM170BQ5T4T1 132 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 GTF2H5Q6ZYL4 71 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 HIST1H4GQ99525 98 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 TIMM21Q9BVV7 248 aa4.02□□□□□ -1.77
USP40-202ENST00000409945 IGHV1-58A0A0C4DH39 117 aa4.01□□□□□ -1.77
USP40-202ENST00000409945 LINC00959A0A1B0GUT2 108 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms