RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 LUZP6Q538Z0 58 aa5.52□□□□□ -1.53
SYNE1-210ENST00000409694 Q6ZQT0 140 aa5.52□□□□□ -1.53
SYNE1-210ENST00000409694 Q6ZRX8 168 aa5.52□□□□□ -1.53
SYNE1-210ENST00000409694 IGLV5-39A0A0G2JS06 123 aa5.52□□□□□ -1.53
SYNE1-210ENST00000409694 CD164Q04900 197 aa5.52□□□□□ -1.53
SYNE1-210ENST00000409694 Q6ZRP5 223 aa5.52□□□□□ -1.53
SYNE1-210ENST00000409694 IGLV8-61A0A075B6I0 122 aa5.52□□□□□ -1.53
SYNE1-210ENST00000409694 TYMSOSQ8TAI1 123 aa5.51□□□□□ -1.53
SYNE1-210ENST00000409694 H3BNG1 76 aa5.51□□□□□ -1.53
SYNE1-210ENST00000409694 OXLD1Q5BKU9 147 aa5.51□□□□□ -1.53
SYNE1-210ENST00000409694 A8MWP4 228 aa5.51□□□□□ -1.53
SYNE1-210ENST00000409694 TRBV7-4A0A0J9YYF1 115 aa5.51□□□□□ -1.53
SYNE1-210ENST00000409694 MIR22HGQ0VDD5 57 aa5.51□□□□□ -1.53
SYNE1-210ENST00000409694 NCOR2Q9Y618 2525 aa5.51□□□□□ -1.53
SYNE1-210ENST00000409694 A8MTW9 85 aa5.51□□□□□ -1.53
SYNE1-210ENST00000409694 HIVEP3Q5T1R4 2406 aa5.5□□□□□ -1.53
SYNE1-210ENST00000409694 A0A1W2PNU3 283 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-210ENST00000409694 COA5Q86WW8 74 aa5.5□□□□□ -1.53
SYNE1-210ENST00000409694 CRIP3Q6Q6R5 217 aa5.49□□□□□ -1.53
SYNE1-210ENST00000409694 LINC00476Q8WZB0 136 aa5.49□□□□□ -1.53
SYNE1-210ENST00000409694 Q96NJ1 140 aa5.49□□□□□ -1.53
SYNE1-210ENST00000409694 APLNQ9ULZ1 77 aa5.49□□□□□ -1.53
SYNE1-210ENST00000409694 KTN1-AS1Q86SY8 53 aa5.49□□□□□ -1.53
SYNE1-210ENST00000409694 C16orf90A8MZG2 172 aa5.49□□□□□ -1.53
SYNE1-210ENST00000409694 LINC01554Q52M75 96 aa5.48□□□□□ -1.53
SYNE1-210ENST00000409694 CDC42SE1Q9NRR8 79 aa5.48□□□□□ -1.53
SYNE1-210ENST00000409694 FHL3Q13643 280 aa5.48□□□□□ -1.53
SYNE1-210ENST00000409694 LINC00167Q96N53 147 aa5.48□□□□□ -1.53
SYNE1-210ENST00000409694 C2CD3Q4AC94 2353 aa5.48□□□□□ -1.53
SYNE1-210ENST00000409694 URB1-AS1Q96HZ7 61 aa5.48□□□□□ -1.53
SYNE1-210ENST00000409694 LINC00310P59036 64 aa5.47□□□□□ -1.53
SYNE1-210ENST00000409694 MDFIQ99750 246 aa5.47□□□□□ -1.53
SYNE1-210ENST00000409694 IGLV5-45A0A087WSX0 123 aa5.46□□□□□ -1.53
SYNE1-210ENST00000409694 ZFHX2Q9C0A1 2572 aaPredicted RBP5.45□□□□□ -1.54
SYNE1-210ENST00000409694 COX6B2Q6YFQ2 88 aa5.45□□□□□ -1.54
SYNE1-210ENST00000409694 LINC00483Q53H64 154 aa5.45□□□□□ -1.54
SYNE1-210ENST00000409694 MRPL34Q9BQ48 92 aaKnown RBP5.45□□□□□ -1.54
SYNE1-210ENST00000409694 TM2D3Q9BRN9 247 aa5.45□□□□□ -1.54
SYNE1-210ENST00000409694 LCA10Q71F78 164 aa5.45□□□□□ -1.54
SYNE1-210ENST00000409694 Q6ZSN1 163 aa5.44□□□□□ -1.54
SYNE1-210ENST00000409694 TLN1Q9Y490 2541 aaKnown RBP5.44□□□□□ -1.54
SYNE1-210ENST00000409694 IGHV3OR16-9A0A0B4J2B5 98 aa5.44□□□□□ -1.54
SYNE1-210ENST00000409694 RTL8CO15255 209 aa5.43□□□□□ -1.54
SYNE1-210ENST00000409694 GVQW2A0A096LPI5 108 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-210ENST00000409694 A0A096LNJ9 63 aa5.43□□□□□ -1.54
SYNE1-210ENST00000409694 ST20-AS1Q8NBB2 130 aa5.42□□□□□ -1.54
SYNE1-210ENST00000409694 FAM19A4Q96LR4 140 aa5.42□□□□□ -1.54
SYNE1-210ENST00000409694 PRO3102Q9H379 93 aa5.42□□□□□ -1.54
SYNE1-210ENST00000409694 PRR15Q8IV56 129 aa5.42□□□□□ -1.54
SYNE1-210ENST00000409694 F8P00451 2351 aa5.42□□□□□ -1.54
SYNE1-210ENST00000409694 NAV2Q8IVL1 2488 aa5.41□□□□□ -1.54
SYNE1-210ENST00000409694 RBM12B-AS1Q9P1G2 102 aa5.41□□□□□ -1.54
SYNE1-210ENST00000409694 RPL37AP61513 92 aaKnown RBP5.4□□□□□ -1.54
SYNE1-210ENST00000409694 J3QL48 77 aa5.4□□□□□ -1.54
SYNE1-210ENST00000409694 C9orf129Q5T035 196 aaKnown RBP5.39□□□□□ -1.55
SYNE1-210ENST00000409694 IGLV6-57P01721 117 aa5.39□□□□□ -1.55
SYNE1-210ENST00000409694 TLN2Q9Y4G6 2542 aa5.39□□□□□ -1.55
SYNE1-210ENST00000409694 KLKP1Q107X0 134 aa5.39□□□□□ -1.55
SYNE1-210ENST00000409694 FAM218AQ96MZ4 157 aa5.38□□□□□ -1.55
SYNE1-210ENST00000409694 PHF5AQ7RTV0 110 aaKnown RBP5.38□□□□□ -1.55
SYNE1-210ENST00000409694 ANKRD11Q6UB99 2663 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-210ENST00000409694 A8MUN3 132 aa5.38□□□□□ -1.55
SYNE1-210ENST00000409694 K7EQZ3 153 aa5.37□□□□□ -1.55
SYNE1-210ENST00000409694 SPANXA2-OT1Q8N9U9 137 aa5.37□□□□□ -1.55
SYNE1-210ENST00000409694 NBDYA0A0U1RRE5 68 aa5.37□□□□□ -1.55
SYNE1-210ENST00000409694 WISP2O76076 250 aa5.37□□□□□ -1.55
SYNE1-210ENST00000409694 CHTF8P0CG12 524 aa5.37□□□□□ -1.55
SYNE1-210ENST00000409694 PRO0461Q9UI25 63 aa5.37□□□□□ -1.55
SYNE1-210ENST00000409694 CSNK1G2-AS1Q8NCQ2 148 aa5.36□□□□□ -1.55
SYNE1-210ENST00000409694 LINC00304Q8N9R0 145 aa5.36□□□□□ -1.55
SYNE1-210ENST00000409694 A0A1B0GVX0 72 aa5.36□□□□□ -1.55
SYNE1-210ENST00000409694 AVPP01185 164 aa5.35□□□□□ -1.55
SYNE1-210ENST00000409694 SMCPP49901 116 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-210ENST00000409694 LINC00315P59091 139 aa5.35□□□□□ -1.55
SYNE1-210ENST00000409694 ANKRD17O75179 2603 aaKnown RBP5.34□□□□□ -1.55
SYNE1-210ENST00000409694 SPTBN4Q9H254 2564 aa5.34□□□□□ -1.55
SYNE1-210ENST00000409694 FN1P02751 2386 aaKnown RBP5.34□□□□□ -1.55
SYNE1-210ENST00000409694 C8orf17Q9NRJ1 99 aa5.34□□□□□ -1.55
SYNE1-210ENST00000409694 ABCA12Q86UK0 2595 aa5.34□□□□□ -1.55
SYNE1-210ENST00000409694 DNAH10OSP0CZ25 163 aa5.33□□□□□ -1.56
SYNE1-210ENST00000409694 Q1T7F1 81 aa5.33□□□□□ -1.56
SYNE1-210ENST00000409694 SMR3AQ99954 134 aa5.33□□□□□ -1.56
SYNE1-210ENST00000409694 USP9XQ93008 2570 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-210ENST00000409694 A0A0A0MQY5 61 aa5.32□□□□□ -1.56
SYNE1-210ENST00000409694 KCNQ1DNQ9H478 68 aa5.32□□□□□ -1.56
SYNE1-210ENST00000409694 FAM104AQ969W3 186 aa5.31□□□□□ -1.56
SYNE1-210ENST00000409694 OBSCN-AS1Q96MR7 158 aa5.31□□□□□ -1.56
SYNE1-210ENST00000409694 IGLV5-37A0A075B6J1 123 aa5.31□□□□□ -1.56
SYNE1-210ENST00000409694 COL4A2P08572 1712 aa5.31□□□□□ -1.56
SYNE1-210ENST00000409694 DSCR10P59022 87 aa5.3□□□□□ -1.56
SYNE1-210ENST00000409694 MTORP42345 2549 aa5.3□□□□□ -1.56
SYNE1-210ENST00000409694 ACANP16112 2415 aa5.29□□□□□ -1.56
SYNE1-210ENST00000409694 IGLV1-50A0A075B6I6 118 aa5.29□□□□□ -1.56
SYNE1-210ENST00000409694 IGFL1Q6UW32 110 aa5.29□□□□□ -1.56
SYNE1-210ENST00000409694 IGF2RP11717 2491 aa5.28□□□□□ -1.56
SYNE1-210ENST00000409694 LINC00588Q9Y4M8 146 aa5.28□□□□□ -1.56
SYNE1-210ENST00000409694 CHD8Q9HCK8 2581 aa5.28□□□□□ -1.56
SYNE1-210ENST00000409694 WDR87Q6ZQQ6 2873 aa5.27□□□□□ -1.57
SYNE1-210ENST00000409694 ZNF861PO60384 105 aa5.27□□□□□ -1.57
SYNE1-210ENST00000409694 PIEZO2Q9H5I5 2752 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms