RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SERP2Q8N6R1 65 aa12.77□□□□□ -0.36
USP48-204ENST00000400301 J3KT08 172 aa12.76□□□□□ -0.37
USP48-204ENST00000400301 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.76□□□□□ -0.37
USP48-204ENST00000400301 TRBV7-7A0A0K0K1E9 115 aa12.76□□□□□ -0.37
USP48-204ENST00000400301 ASPMQ8IZT6 3477 aa12.76□□□□□ -0.37
USP48-204ENST00000400301 FAM104AQ969W3 186 aa12.75□□□□□ -0.37
USP48-204ENST00000400301 BPY2O14599 106 aa12.75□□□□□ -0.37
USP48-204ENST00000400301 FAM19A5Q7Z5A7 132 aaPredicted RBP12.75□□□□□ -0.37
USP48-204ENST00000400301 ITPR1Q14643 2758 aa12.75□□□□□ -0.37
USP48-204ENST00000400301 C10orf25Q5T742 122 aa12.74□□□□□ -0.37
USP48-204ENST00000400301 LINC00575Q6W349 94 aa12.74□□□□□ -0.37
USP48-204ENST00000400301 RPL37AP8A6NKH3 93 aa12.72□□□□□ -0.37
USP48-204ENST00000400301 HIGD2AQ9BW72 106 aa12.72□□□□□ -0.37
USP48-204ENST00000400301 HRNRQ86YZ3 2850 aaPredicted RBP12.71□□□□□ -0.37
USP48-204ENST00000400301 C3orf84H3BNL1 204 aa12.71□□□□□ -0.37
USP48-204ENST00000400301 Q8NAQ8 132 aa12.71□□□□□ -0.37
USP48-204ENST00000400301 CR1P17927 2039 aa12.7□□□□□ -0.38
USP48-204ENST00000400301 GCN1Q92616 2671 aaKnown RBP12.7□□□□□ -0.38
USP48-204ENST00000400301 NDUFC2-KCTD14E9PQ53 114 aa12.7□□□□□ -0.38
USP48-204ENST00000400301 Q6ZRU5 148 aa12.7□□□□□ -0.38
USP48-204ENST00000400301 KRTAP1-1Q07627 177 aa12.69□□□□□ -0.38
USP48-204ENST00000400301 LAMA5O15230 3695 aa12.68□□□□□ -0.38
USP48-204ENST00000400301 KRTAP10-3P60369 221 aa12.67□□□□□ -0.38
USP48-204ENST00000400301 CDK2AP2O75956 126 aa12.67□□□□□ -0.38
USP48-204ENST00000400301 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.66□□□□□ -0.38
USP48-204ENST00000400301 C6orf48Q9UBA6 75 aa12.66□□□□□ -0.38
USP48-204ENST00000400301 UBE2AP49459 152 aa12.65□□□□□ -0.38
USP48-204ENST00000400301 ZANQ9Y493 2812 aa12.65□□□□□ -0.38
USP48-204ENST00000400301 FAM19A1Q7Z5A9 133 aa12.64□□□□□ -0.39
USP48-204ENST00000400301 ZFHX4Q86UP3 3567 aa12.64□□□□□ -0.39
USP48-204ENST00000400301 C2orf48Q96LS8 159 aa12.64□□□□□ -0.39
USP48-204ENST00000400301 PPDPFQ9H3Y8 114 aa12.64□□□□□ -0.39
USP48-204ENST00000400301 DHRS4-AS1Q9P1J3 65 aa12.63□□□□□ -0.39
USP48-204ENST00000400301 UNC79Q9P2D8 2635 aa12.63□□□□□ -0.39
USP48-204ENST00000400301 ESRGQ1W209 222 aa12.63□□□□□ -0.39
USP48-204ENST00000400301 LINC00612Q8N6U2 182 aa12.62□□□□□ -0.39
USP48-204ENST00000400301 DCHS1Q96JQ0 3298 aa12.62□□□□□ -0.39
USP48-204ENST00000400301 MAST4O15021 2626 aa12.61□□□□□ -0.39
USP48-204ENST00000400301 NBEAL2Q6ZNJ1 2754 aa12.61□□□□□ -0.39
USP48-204ENST00000400301 MGAM2Q2M2H8 2515 aa12.6□□□□□ -0.39
USP48-204ENST00000400301 PKIGQ9Y2B9 76 aa12.6□□□□□ -0.39
USP48-204ENST00000400301 SETXQ7Z333 2677 aaKnown RBP12.59□□□□□ -0.39
USP48-204ENST00000400301 C14orf177Q52M58 125 aa12.59□□□□□ -0.39
USP48-204ENST00000400301 SMCR5Q8TEV8 140 aa12.59□□□□□ -0.39
USP48-204ENST00000400301 RELNP78509 3460 aa12.59□□□□□ -0.39
USP48-204ENST00000400301 TMEM258P61165 79 aa12.59□□□□□ -0.39
USP48-204ENST00000400301 LOC107984640A0A0U1RRK4 108 aa12.58□□□□□ -0.39
USP48-204ENST00000400301 UTP20O75691 2785 aaKnown RBP12.58□□□□□ -0.4
USP48-204ENST00000400301 KIAA0087Q14695 138 aa12.58□□□□□ -0.4
USP48-204ENST00000400301 SNURFQ9Y675 71 aa12.58□□□□□ -0.4
USP48-204ENST00000400301 Q6ZVQ6 151 aa12.57□□□□□ -0.4
USP48-204ENST00000400301 A0A096LNI7 61 aa12.57□□□□□ -0.4
USP48-204ENST00000400301 FAM236DA0A1B0GTK5 79 aa12.56□□□□□ -0.4
USP48-204ENST00000400301 FAM236CP0DP71 79 aa12.56□□□□□ -0.4
USP48-204ENST00000400301 LINC01556Q5JQF7 62 aa12.55□□□□□ -0.4
USP48-204ENST00000400301 H3BNG1 76 aa12.53□□□□□ -0.4
USP48-204ENST00000400301 ASH1LQ9NR48 2969 aaKnown RBP12.53□□□□□ -0.4
USP48-204ENST00000400301 LINC01547P58512 204 aaPredicted RBP12.52□□□□□ -0.41
USP48-204ENST00000400301 F8WDY8 70 aa12.51□□□□□ -0.41
USP48-204ENST00000400301 NHLRC4P0CG21 123 aaPredicted RBP12.51□□□□□ -0.41
USP48-204ENST00000400301 TRAV7A0A075B6U4 112 aa12.5□□□□□ -0.41
USP48-204ENST00000400301 B9D2Q9BPU9 175 aa12.5□□□□□ -0.41
USP48-204ENST00000400301 SPATA3Q8NHX4 192 aa12.5□□□□□ -0.41
USP48-204ENST00000400301 UBR5O95071 2799 aaPredicted RBP12.5□□□□□ -0.41
USP48-204ENST00000400301 MP68P56378 58 aa12.5□□□□□ -0.41
USP48-204ENST00000400301 KRTAP24-1Q3LI83 254 aa12.49□□□□□ -0.41
USP48-204ENST00000400301 C1orf137Q5JT78 98 aa12.49□□□□□ -0.41
USP48-204ENST00000400301 TEP1Q99973 2627 aaKnown RBP12.49□□□□□ -0.41
USP48-204ENST00000400301 NDUFB1O75438 58 aa12.48□□□□□ -0.41
USP48-204ENST00000400301 C7orf33Q8WU49 177 aa12.48□□□□□ -0.41
USP48-204ENST00000400301 GVQW2A0A096LPI5 108 aaPredicted RBP12.47□□□□□ -0.41
USP48-204ENST00000400301 PRR34Q9NV39 138 aa12.47□□□□□ -0.41
USP48-204ENST00000400301 C9orf129Q5T035 196 aaKnown RBP12.46□□□□□ -0.41
USP48-204ENST00000400301 IGLV6-57P01721 117 aa12.46□□□□□ -0.41
USP48-204ENST00000400301 Q6ZQT0 140 aa12.46□□□□□ -0.41
USP48-204ENST00000400301 LINC01600Q96MT4 127 aa12.46□□□□□ -0.41
USP48-204ENST00000400301 DCHS2Q6V1P9 2916 aa12.46□□□□□ -0.42
USP48-204ENST00000400301 ELOF1P60002 83 aaKnown RBP12.46□□□□□ -0.42
USP48-204ENST00000400301 H0Y9J4 135 aa12.45□□□□□ -0.42
USP48-204ENST00000400301 NDUFS5O43920 106 aa12.45□□□□□ -0.42
USP48-204ENST00000400301 MRPL55Q7Z7F7 128 aaKnown RBP12.44□□□□□ -0.42
USP48-204ENST00000400301 REG3GQ6UW15 175 aa12.43□□□□□ -0.42
USP48-204ENST00000400301 PRYO14603 147 aa12.42□□□□□ -0.42
USP48-204ENST00000400301 VPREB1P12018 145 aa12.42□□□□□ -0.42
USP48-204ENST00000400301 ITPR2Q14571 2701 aa12.42□□□□□ -0.42
USP48-204ENST00000400301 CRYBG3Q68DQ2 2970 aa12.42□□□□□ -0.42
USP48-204ENST00000400301 C22orf24Q9Y442 160 aa12.42□□□□□ -0.42
USP48-204ENST00000400301 M0R2N4 97 aa12.41□□□□□ -0.42
USP48-204ENST00000400301 Q8N9L7 120 aa12.41□□□□□ -0.42
USP48-204ENST00000400301 TRBV7-6A0A0J9YX20 115 aa12.4□□□□□ -0.42
USP48-204ENST00000400301 NDUFC1O43677 76 aa12.4□□□□□ -0.42
USP48-204ENST00000400301 CRYGAP11844 174 aa12.4□□□□□ -0.42
USP48-204ENST00000400301 Q6ZRP5 223 aa12.4□□□□□ -0.42
USP48-204ENST00000400301 LOC110117498A0A087WWA1 95 aa12.4□□□□□ -0.43
USP48-204ENST00000400301 CXCL6P80162 114 aa12.39□□□□□ -0.43
USP48-204ENST00000400301 WFDC13Q8IUB5 93 aa12.39□□□□□ -0.43
USP48-204ENST00000400301 KRTAP10-11P60412 298 aa12.38□□□□□ -0.43
USP48-204ENST00000400301 LINC00167Q96N53 147 aa12.38□□□□□ -0.43
USP48-204ENST00000400301 NOTCH1P46531 2555 aa12.38□□□□□ -0.43
USP48-204ENST00000400301 FAM30AQ9NZY2 134 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms