RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 BBC3Q96PG8 261 aaPredicted RBP6.51□□□□□ -1.37
COL28A1-201ENST00000399429 ODF3L2Q3SX64 289 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 IGKV2D-24A0A075B6R9 120 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 LINC01006Q8NI28 216 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 C4orf3Q8WVX3 66 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 A0A0J9YWU9 116 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 CDK2AP2O75956 126 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 C6orf223Q8N319 242 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 PLAC8L1A1L4L8 177 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 PRR15LQ9BU68 103 aa6.5□□□□□ -1.37
COL28A1-201ENST00000399429 FAM104AQ969W3 186 aa6.48□□□□□ -1.37
COL28A1-201ENST00000399429 NDUFS5O43920 106 aa6.47□□□□□ -1.37
COL28A1-201ENST00000399429 SMIM29Q86T20 159 aa6.47□□□□□ -1.37
COL28A1-201ENST00000399429 LINC00208Q96KT6 92 aa6.47□□□□□ -1.37
COL28A1-201ENST00000399429 DEFB135Q30KP9 77 aa6.47□□□□□ -1.37
COL28A1-201ENST00000399429 FP248Q71RG6 208 aaPredicted RBP6.47□□□□□ -1.37
COL28A1-201ENST00000399429 NDUFB1O75438 58 aa6.47□□□□□ -1.37
COL28A1-201ENST00000399429 APOC4P55056 127 aa6.46□□□□□ -1.37
COL28A1-201ENST00000399429 LYPD5Q6UWN5 251 aa6.46□□□□□ -1.37
COL28A1-201ENST00000399429 LYRM9A8MSI8 78 aa6.46□□□□□ -1.38
COL28A1-201ENST00000399429 M0R2N4 97 aa6.46□□□□□ -1.38
COL28A1-201ENST00000399429 UBE2AP49459 152 aa6.46□□□□□ -1.38
COL28A1-201ENST00000399429 DEFB116Q30KQ4 102 aa6.46□□□□□ -1.38
COL28A1-201ENST00000399429 EPG5Q9HCE0 2579 aa6.46□□□□□ -1.38
COL28A1-201ENST00000399429 ZZEF1O43149 2961 aa6.46□□□□□ -1.38
COL28A1-201ENST00000399429 CENPEQ02224 2701 aa6.45□□□□□ -1.38
COL28A1-201ENST00000399429 LOC110117498A0A087WWA1 95 aa6.45□□□□□ -1.38
COL28A1-201ENST00000399429 ZNF702PQ9H963 129 aa6.45□□□□□ -1.38
COL28A1-201ENST00000399429 LOC400499M0QZD8 3231 aa6.45□□□□□ -1.38
COL28A1-201ENST00000399429 C22orf24Q9Y442 160 aa6.45□□□□□ -1.38
COL28A1-201ENST00000399429 KLK9Q2XQG4 91 aa6.45□□□□□ -1.38
COL28A1-201ENST00000399429 DNAJC9-AS1A6NH13 148 aa6.44□□□□□ -1.38
COL28A1-201ENST00000399429 OBSCN-AS1Q96MR7 158 aa6.44□□□□□ -1.38
COL28A1-201ENST00000399429 PRO3102Q9H379 93 aa6.44□□□□□ -1.38
COL28A1-201ENST00000399429 H0Y9J4 135 aa6.43□□□□□ -1.38
COL28A1-201ENST00000399429 M0R378 163 aa6.43□□□□□ -1.38
COL28A1-201ENST00000399429 ACANP16112 2415 aa6.43□□□□□ -1.38
COL28A1-201ENST00000399429 A8MUN3 132 aa6.43□□□□□ -1.38
COL28A1-201ENST00000399429 ATMQ13315 3056 aa6.42□□□□□ -1.38
COL28A1-201ENST00000399429 A0A096LNI7 61 aa6.42□□□□□ -1.38
COL28A1-201ENST00000399429 RPL37AP8A6NKH3 93 aa6.42□□□□□ -1.38
COL28A1-201ENST00000399429 Q6YL49 198 aa6.42□□□□□ -1.38
COL28A1-201ENST00000399429 LRBAP50851 2863 aa6.41□□□□□ -1.38
COL28A1-201ENST00000399429 TNRC18O15417 2968 aaPredicted RBP6.41□□□□□ -1.38
COL28A1-201ENST00000399429 LY6G6DO95868 133 aa6.41□□□□□ -1.38
COL28A1-201ENST00000399429 C1orf137Q5JT78 98 aa6.41□□□□□ -1.38
COL28A1-201ENST00000399429 C10orf25Q5T742 122 aa6.41□□□□□ -1.38
COL28A1-201ENST00000399429 DMXL1Q9Y485 3027 aa6.4□□□□□ -1.38
COL28A1-201ENST00000399429 SPART-AS1P0CW21 52 aa6.4□□□□□ -1.38
COL28A1-201ENST00000399429 FAM229BQ4G0N7 80 aa6.4□□□□□ -1.39
COL28A1-201ENST00000399429 C1orf64Q8NEQ6 169 aa6.39□□□□□ -1.39
COL28A1-201ENST00000399429 DEFB113Q30KQ7 82 aa6.39□□□□□ -1.39
COL28A1-201ENST00000399429 A0A1B0GUV1 79 aa6.39□□□□□ -1.39
COL28A1-201ENST00000399429 AKAP13Q12802 2813 aa6.39□□□□□ -1.39
COL28A1-201ENST00000399429 B9D2Q9BPU9 175 aa6.38□□□□□ -1.39
COL28A1-201ENST00000399429 ANKRD17O75179 2603 aaKnown RBP6.38□□□□□ -1.39
COL28A1-201ENST00000399429 KPRPQ5T749 579 aaPredicted RBP6.38□□□□□ -1.39
COL28A1-201ENST00000399429 J3QKU1 62 aa6.37□□□□□ -1.39
COL28A1-201ENST00000399429 USP24Q9UPU5 2620 aa6.37□□□□□ -1.39
COL28A1-201ENST00000399429 TRBV7-4A0A0J9YYF1 115 aa6.37□□□□□ -1.39
COL28A1-201ENST00000399429 TRAV22A0A0B4J277 110 aa6.36□□□□□ -1.39
COL28A1-201ENST00000399429 CD164Q04900 197 aa6.36□□□□□ -1.39
COL28A1-201ENST00000399429 IGKV4-1P06312 121 aa6.36□□□□□ -1.39
COL28A1-201ENST00000399429 ERC2-IT1O76042 136 aa6.36□□□□□ -1.39
COL28A1-201ENST00000399429 KIAA0087Q14695 138 aa6.35□□□□□ -1.39
COL28A1-201ENST00000399429 ZFHX4Q86UP3 3567 aa6.35□□□□□ -1.39
COL28A1-201ENST00000399429 HCG22E2RYF7 251 aa6.35□□□□□ -1.39
COL28A1-201ENST00000399429 SYCNQ0VAF6 134 aa6.35□□□□□ -1.39
COL28A1-201ENST00000399429 ASPMQ8IZT6 3477 aa6.35□□□□□ -1.39
COL28A1-201ENST00000399429 PCOTHQ58A44 107 aa6.35□□□□□ -1.39
COL28A1-201ENST00000399429 ASH1LQ9NR48 2969 aaKnown RBP6.34□□□□□ -1.39
COL28A1-201ENST00000399429 A0A096LNT2 108 aa6.34□□□□□ -1.39
COL28A1-201ENST00000399429 C9orf66Q5T8R8 295 aa6.34□□□□□ -1.39
COL28A1-201ENST00000399429 LIMD2Q9BT23 127 aa6.34□□□□□ -1.39
COL28A1-201ENST00000399429 DHRS4-AS1Q9P1J3 65 aa6.34□□□□□ -1.39
COL28A1-201ENST00000399429 CR1P17927 2039 aa6.33□□□□□ -1.4
COL28A1-201ENST00000399429 H0Y9P7 68 aa6.33□□□□□ -1.4
COL28A1-201ENST00000399429 LINC00167Q96N53 147 aa6.33□□□□□ -1.4
COL28A1-201ENST00000399429 CHD6Q8TD26 2715 aa6.33□□□□□ -1.4
COL28A1-201ENST00000399429 LELP1Q5T871 98 aa6.33□□□□□ -1.4
COL28A1-201ENST00000399429 FLNBO75369 2602 aaKnown RBP6.32□□□□□ -1.4
COL28A1-201ENST00000399429 IGKV2-24A0A0C4DH68 120 aa6.32□□□□□ -1.4
COL28A1-201ENST00000399429 ELOF1P60002 83 aaKnown RBP6.32□□□□□ -1.4
COL28A1-201ENST00000399429 A0A087WSZ3 146 aa6.32□□□□□ -1.4
COL28A1-201ENST00000399429 EGFEM1PQ0D2K5 195 aa6.32□□□□□ -1.4
COL28A1-201ENST00000399429 PRR15Q8IV56 129 aa6.32□□□□□ -1.4
COL28A1-201ENST00000399429 IGLV6-57P01721 117 aa6.31□□□□□ -1.4
COL28A1-201ENST00000399429 C6orf48Q9UBA6 75 aa6.31□□□□□ -1.4
COL28A1-201ENST00000399429 hDV103S1A0JD37 113 aa6.31□□□□□ -1.4
COL28A1-201ENST00000399429 IGHV4-31P0DP07 118 aa6.31□□□□□ -1.4
COL28A1-201ENST00000399429 FSHBP01225 129 aa6.3□□□□□ -1.4
COL28A1-201ENST00000399429 Q6ZRU5 148 aa6.3□□□□□ -1.4
COL28A1-201ENST00000399429 CASC2Q6XLA1 102 aa6.3□□□□□ -1.4
COL28A1-201ENST00000399429 ITPR1Q14643 2758 aa6.3□□□□□ -1.4
COL28A1-201ENST00000399429 NBEAL2Q6ZNJ1 2754 aa6.3□□□□□ -1.4
COL28A1-201ENST00000399429 SPAG11AQ6PDA7 123 aa6.29□□□□□ -1.4
COL28A1-201ENST00000399429 EPM2AB3EWF7 344 aa6.29□□□□□ -1.4
COL28A1-201ENST00000399429 C16orf95Q9H693 158 aa6.29□□□□□ -1.4
COL28A1-201ENST00000399429 K7EQZ3 153 aa6.28□□□□□ -1.4
COL28A1-201ENST00000399429 ATRQ13535 2644 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms