RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 IMUPQ9GZP8 106 aa9.47□□□□□ -0.89
SNCA-204ENST00000394989 PRR34Q9NV39 138 aa9.47□□□□□ -0.89
SNCA-204ENST00000394989 A0A087WYN8 130 aa9.47□□□□□ -0.89
SNCA-204ENST00000394989 C22orf24Q9Y442 160 aa9.47□□□□□ -0.89
SNCA-204ENST00000394989 NOTCH1P46531 2555 aa9.46□□□□□ -0.89
SNCA-204ENST00000394989 MALP21145 153 aa9.46□□□□□ -0.89
SNCA-204ENST00000394989 RPL28P46779 137 aaKnown RBP9.46□□□□□ -0.89
SNCA-204ENST00000394989 Q6ZTC4 211 aa9.46□□□□□ -0.89
SNCA-204ENST00000394989 ENHOQ6UWT2 76 aa9.45□□□□□ -0.9
SNCA-204ENST00000394989 KLK12Q9UKR0 248 aa9.45□□□□□ -0.9
SNCA-204ENST00000394989 LINC00846Q9NV44 126 aa9.45□□□□□ -0.9
SNCA-204ENST00000394989 COL6A5A8TX70 2615 aa9.45□□□□□ -0.9
SNCA-204ENST00000394989 CYSRT1A8MQ03 144 aa9.45□□□□□ -0.9
SNCA-204ENST00000394989 C4orf26Q17RF5 130 aa9.45□□□□□ -0.9
SNCA-204ENST00000394989 C5orf47Q569G3 176 aa9.45□□□□□ -0.9
SNCA-204ENST00000394989 C2orf48Q96LS8 159 aa9.45□□□□□ -0.9
SNCA-204ENST00000394989 C9orf116Q5BN46 136 aaPredicted RBP9.44□□□□□ -0.9
SNCA-204ENST00000394989 SMIM11BQ8TCY0 68 aa9.44□□□□□ -0.9
SNCA-204ENST00000394989 NBEAL1Q6ZS30 2694 aa9.44□□□□□ -0.9
SNCA-204ENST00000394989 KPRPQ5T749 579 aaPredicted RBP9.44□□□□□ -0.9
SNCA-204ENST00000394989 LECT2O14960 151 aa9.43□□□□□ -0.9
SNCA-204ENST00000394989 HRCT1Q6UXD1 115 aa9.43□□□□□ -0.9
SNCA-204ENST00000394989 H3BNG1 76 aa9.42□□□□□ -0.9
SNCA-204ENST00000394989 INAFM2P0DMQ5 153 aa9.42□□□□□ -0.9
SNCA-204ENST00000394989 WFDC10BQ8IUB3 73 aa9.42□□□□□ -0.9
SNCA-204ENST00000394989 C6orf223Q8N319 242 aa9.42□□□□□ -0.9
SNCA-204ENST00000394989 CXCL5P42830 114 aa9.42□□□□□ -0.9
SNCA-204ENST00000394989 A0A0J9YWU9 116 aa9.41□□□□□ -0.9
SNCA-204ENST00000394989 ATOX1O00244 68 aa9.41□□□□□ -0.9
SNCA-204ENST00000394989 C10orf25Q5T742 122 aa9.41□□□□□ -0.9
SNCA-204ENST00000394989 COX17Q14061 63 aa9.41□□□□□ -0.9
SNCA-204ENST00000394989 PRR3P79522 188 aaKnown RBP9.4□□□□□ -0.9
SNCA-204ENST00000394989 TRAV23DV6A0A075B6W5 121 aa9.4□□□□□ -0.9
SNCA-204ENST00000394989 OXTP01178 125 aa9.4□□□□□ -0.91
SNCA-204ENST00000394989 RPL18AQ02543 176 aaKnown RBP9.4□□□□□ -0.91
SNCA-204ENST00000394989 Q8NDZ9 215 aa9.4□□□□□ -0.91
SNCA-204ENST00000394989 HUWE1Q7Z6Z7 4374 aaKnown RBP9.4□□□□□ -0.91
SNCA-204ENST00000394989 NANOS2P60321 138 aaKnown RBP9.39□□□□□ -0.91
SNCA-204ENST00000394989 UNQ6190/PRO20217Q6UXQ8 127 aa9.39□□□□□ -0.91
SNCA-204ENST00000394989 USP17L23D6RBM5 183 aa9.38□□□□□ -0.91
SNCA-204ENST00000394989 SPAG11BQ08648 103 aa9.38□□□□□ -0.91
SNCA-204ENST00000394989 DPH3Q96FX2 82 aa9.38□□□□□ -0.91
SNCA-204ENST00000394989 CRYGAP11844 174 aa9.38□□□□□ -0.91
SNCA-204ENST00000394989 ESRGQ1W209 222 aa9.37□□□□□ -0.91
SNCA-204ENST00000394989 PRB2P02812 416 aaPredicted RBP9.36□□□□□ -0.91
SNCA-204ENST00000394989 NDUFC2O95298 119 aa9.35□□□□□ -0.91
SNCA-204ENST00000394989 KRTAP26-1Q6PEX3 210 aa9.35□□□□□ -0.91
SNCA-204ENST00000394989 FAM19A1Q7Z5A9 133 aa9.35□□□□□ -0.91
SNCA-204ENST00000394989 SERP2Q8N6R1 65 aa9.35□□□□□ -0.91
SNCA-204ENST00000394989 C11orf45Q8TAV5 145 aa9.35□□□□□ -0.91
SNCA-204ENST00000394989 DEFB131BA0A096LNP1 70 aa9.34□□□□□ -0.91
SNCA-204ENST00000394989 C20orf197Q8N268 126 aa9.34□□□□□ -0.91
SNCA-204ENST00000394989 DNAH1Q9P2D7 4330 aa9.34□□□□□ -0.91
SNCA-204ENST00000394989 H0YGX0 51 aa9.33□□□□□ -0.92
SNCA-204ENST00000394989 GHRHP01286 108 aa9.33□□□□□ -0.92
SNCA-204ENST00000394989 C6orf48Q9UBA6 75 aa9.32□□□□□ -0.92
SNCA-204ENST00000394989 GVQW2A0A096LPI5 108 aaPredicted RBP9.3□□□□□ -0.92
SNCA-204ENST00000394989 LYSTQ99698 3801 aa9.3□□□□□ -0.92
SNCA-204ENST00000394989 COL7A1Q02388 2944 aa9.29□□□□□ -0.92
SNCA-204ENST00000394989 HIGD2BQ4VC39 106 aa9.29□□□□□ -0.92
SNCA-204ENST00000394989 TMEM258P61165 79 aa9.28□□□□□ -0.92
SNCA-204ENST00000394989 C15orf56Q8N910 161 aa9.28□□□□□ -0.92
SNCA-204ENST00000394989 K7EIL1 84 aa9.28□□□□□ -0.92
SNCA-204ENST00000394989 LINC01556Q5JQF7 62 aa9.28□□□□□ -0.92
SNCA-204ENST00000394989 MUC7Q8TAX7 377 aa9.28□□□□□ -0.92
SNCA-204ENST00000394989 TM2D3Q9BRN9 247 aa9.27□□□□□ -0.93
SNCA-204ENST00000394989 UPK3BQ9BT76 320 aa9.27□□□□□ -0.93
SNCA-204ENST00000394989 Q6JHZ5 121 aa9.27□□□□□ -0.93
SNCA-204ENST00000394989 MGAM2Q2M2H8 2515 aa9.26□□□□□ -0.93
SNCA-204ENST00000394989 ORMDL1Q9P0S3 153 aa9.26□□□□□ -0.93
SNCA-204ENST00000394989 SNURFQ9Y675 71 aa9.26□□□□□ -0.93
SNCA-204ENST00000394989 MRAPQ8TCY5 172 aa9.26□□□□□ -0.93
SNCA-204ENST00000394989 XAGE1AQ9HD64 81 aa9.26□□□□□ -0.93
SNCA-204ENST00000394989 ZNF561-AS1K7EIQ3 104 aa9.25□□□□□ -0.93
SNCA-204ENST00000394989 C6orf99Q4VX62 202 aa9.25□□□□□ -0.93
SNCA-204ENST00000394989 RPS28P62857 69 aaKnown RBP9.24□□□□□ -0.93
SNCA-204ENST00000394989 LINC00167Q96N53 147 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 HAMPP81172 84 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 Q5XG85 94 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 Q6ZRU5 148 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 CAMK2N2Q96S95 79 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 IGLV6-57P01721 117 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 S100A7L2Q5SY68 101 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 Q8N814 137 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 OBSCN-AS1Q96MR7 158 aa9.24□□□□□ -0.93
SNCA-204ENST00000394989 DNAH10OSP0CZ25 163 aa9.23□□□□□ -0.93
SNCA-204ENST00000394989 C1orf43Q9BWL3 253 aa9.23□□□□□ -0.93
SNCA-204ENST00000394989 DNAH9Q9NYC9 4486 aa9.23□□□□□ -0.93
SNCA-204ENST00000394989 IGKV2D-24A0A075B6R9 120 aa9.22□□□□□ -0.93
SNCA-204ENST00000394989 TRAV10A0A0B4J240 114 aa9.22□□□□□ -0.93
SNCA-204ENST00000394989 LINC00588Q9Y4M8 146 aa9.22□□□□□ -0.93
SNCA-204ENST00000394989 SCXQ7RTU7 201 aa9.21□□□□□ -0.93
SNCA-204ENST00000394989 CCKP06307 115 aa9.2□□□□□ -0.94
SNCA-204ENST00000394989 M0R2N4 97 aa9.2□□□□□ -0.94
SNCA-204ENST00000394989 TRBV10-3A0A0K0K1G6 114 aa9.19□□□□□ -0.94
SNCA-204ENST00000394989 PKIGQ9Y2B9 76 aa9.19□□□□□ -0.94
SNCA-204ENST00000394989 DNAH10Q8IVF4 4471 aa9.19□□□□□ -0.94
SNCA-204ENST00000394989 LINC00575Q6W349 94 aa9.18□□□□□ -0.94
SNCA-204ENST00000394989 LAMTOR3Q9UHA4 124 aa9.18□□□□□ -0.94
SNCA-204ENST00000394989 UBL5Q9BZL1 73 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms