RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 A0A087WVE0 104 aa12.5□□□□□ -0.41
PCDHA1-202ENST00000394633 LYRM9A8MSI8 78 aa12.5□□□□□ -0.41
PCDHA1-202ENST00000394633 C9orf66Q5T8R8 295 aa12.5□□□□□ -0.41
PCDHA1-202ENST00000394633 JMJD7-PLA2G4BH0Y9G9 81 aa12.49□□□□□ -0.41
PCDHA1-202ENST00000394633 WFDC9Q8NEX5 89 aa12.49□□□□□ -0.41
PCDHA1-202ENST00000394633 TMEM256-PLSCR3K7ERE1 68 aa12.48□□□□□ -0.41
PCDHA1-202ENST00000394633 C6orf99Q4VX62 202 aa12.47□□□□□ -0.41
PCDHA1-202ENST00000394633 NOTCH1P46531 2555 aa12.47□□□□□ -0.41
PCDHA1-202ENST00000394633 CRYGAP11844 174 aa12.47□□□□□ -0.41
PCDHA1-202ENST00000394633 DEFB135Q30KP9 77 aa12.47□□□□□ -0.41
PCDHA1-202ENST00000394633 C10orf25Q5T742 122 aa12.45□□□□□ -0.42
PCDHA1-202ENST00000394633 C6orf223Q8N319 242 aa12.45□□□□□ -0.42
PCDHA1-202ENST00000394633 NBEAL1Q6ZS30 2694 aa12.44□□□□□ -0.42
PCDHA1-202ENST00000394633 hADV29S1A0JD25 119 aa12.43□□□□□ -0.42
PCDHA1-202ENST00000394633 DAD1P61803 113 aa12.43□□□□□ -0.42
PCDHA1-202ENST00000394633 OXLD1Q5BKU9 147 aa12.43□□□□□ -0.42
PCDHA1-202ENST00000394633 UNQ6190/PRO20217Q6UXQ8 127 aa12.43□□□□□ -0.42
PCDHA1-202ENST00000394633 LINC00575Q6W349 94 aa12.43□□□□□ -0.42
PCDHA1-202ENST00000394633 USP17L23D6RBM5 183 aa12.42□□□□□ -0.42
PCDHA1-202ENST00000394633 S100A7L2Q5SY68 101 aa12.42□□□□□ -0.42
PCDHA1-202ENST00000394633 CYSTM1Q9H1C7 97 aa12.42□□□□□ -0.42
PCDHA1-202ENST00000394633 CELA1Q9UNI1 258 aa12.42□□□□□ -0.42
PCDHA1-202ENST00000394633 SPAG11BQ08648 103 aa12.42□□□□□ -0.42
PCDHA1-202ENST00000394633 SERP2Q8N6R1 65 aa12.41□□□□□ -0.42
PCDHA1-202ENST00000394633 DNAH3Q8TD57 4116 aa12.4□□□□□ -0.42
PCDHA1-202ENST00000394633 WIPF1O43516 503 aa12.4□□□□□ -0.42
PCDHA1-202ENST00000394633 MGAM2Q2M2H8 2515 aa12.39□□□□□ -0.43
PCDHA1-202ENST00000394633 UPK3BQ9BT76 320 aa12.38□□□□□ -0.43
PCDHA1-202ENST00000394633 ATP5EP2Q5VTU8 51 aa12.38□□□□□ -0.43
PCDHA1-202ENST00000394633 LYPD5Q6UWN5 251 aa12.38□□□□□ -0.43
PCDHA1-202ENST00000394633 Q8NAQ8 132 aa12.38□□□□□ -0.43
PCDHA1-202ENST00000394633 A0A0J9YWU9 116 aa12.37□□□□□ -0.43
PCDHA1-202ENST00000394633 IGHV4-30-4P0DP06 118 aa12.37□□□□□ -0.43
PCDHA1-202ENST00000394633 APOC4P55056 127 aa12.37□□□□□ -0.43
PCDHA1-202ENST00000394633 LELP1Q5T871 98 aa12.37□□□□□ -0.43
PCDHA1-202ENST00000394633 MUC7Q8TAX7 377 aa12.36□□□□□ -0.43
PCDHA1-202ENST00000394633 MDFIQ99750 246 aa12.36□□□□□ -0.43
PCDHA1-202ENST00000394633 IGLV6-57P01721 117 aa12.35□□□□□ -0.43
PCDHA1-202ENST00000394633 HTN3P15516 51 aa12.35□□□□□ -0.43
PCDHA1-202ENST00000394633 KRTAP10-11P60412 298 aa12.35□□□□□ -0.43
PCDHA1-202ENST00000394633 KLK12Q9UKR0 248 aa12.35□□□□□ -0.43
PCDHA1-202ENST00000394633 Q6ZQT0 140 aa12.34□□□□□ -0.43
PCDHA1-202ENST00000394633 FAM19A1Q7Z5A9 133 aa12.34□□□□□ -0.43
PCDHA1-202ENST00000394633 PRR34Q9NV39 138 aa12.34□□□□□ -0.43
PCDHA1-202ENST00000394633 ZNF561-AS1K7EIQ3 104 aa12.34□□□□□ -0.43
PCDHA1-202ENST00000394633 ENHOQ6UWT2 76 aa12.34□□□□□ -0.43
PCDHA1-202ENST00000394633 LOC107984640A0A0U1RRK4 108 aa12.33□□□□□ -0.44
PCDHA1-202ENST00000394633 RBM3P98179 157 aaKnown RBP12.33□□□□□ -0.44
PCDHA1-202ENST00000394633 UBL5Q9BZL1 73 aa12.33□□□□□ -0.44
PCDHA1-202ENST00000394633 MIFP14174 115 aa12.33□□□□□ -0.44
PCDHA1-202ENST00000394633 TRAV23DV6A0A075B6W5 121 aa12.31□□□□□ -0.44
PCDHA1-202ENST00000394633 LOC110117498A0A087WWA1 95 aa12.31□□□□□ -0.44
PCDHA1-202ENST00000394633 M0R2N4 97 aa12.31□□□□□ -0.44
PCDHA1-202ENST00000394633 SPART-AS1P0CW21 52 aa12.31□□□□□ -0.44
PCDHA1-202ENST00000394633 LAMTOR3Q9UHA4 124 aa12.31□□□□□ -0.44
PCDHA1-202ENST00000394633 GVQW2A0A096LPI5 108 aaPredicted RBP12.3□□□□□ -0.44
PCDHA1-202ENST00000394633 TRBV10-3A0A0K0K1G6 114 aa12.3□□□□□ -0.44
PCDHA1-202ENST00000394633 C6orf48Q9UBA6 75 aa12.3□□□□□ -0.44
PCDHA1-202ENST00000394633 J3KT08 172 aa12.29□□□□□ -0.44
PCDHA1-202ENST00000394633 GHRHP01286 108 aa12.29□□□□□ -0.44
PCDHA1-202ENST00000394633 Q6ZQY7 126 aa12.29□□□□□ -0.44
PCDHA1-202ENST00000394633 EGFEM1PQ0D2K5 195 aa12.28□□□□□ -0.44
PCDHA1-202ENST00000394633 XAGE1AQ9HD64 81 aa12.27□□□□□ -0.44
PCDHA1-202ENST00000394633 TMEM258P61165 79 aa12.27□□□□□ -0.45
PCDHA1-202ENST00000394633 DNHD1Q96M86 4753 aa12.27□□□□□ -0.45
PCDHA1-202ENST00000394633 DIRC1Q969H9 104 aa12.25□□□□□ -0.45
PCDHA1-202ENST00000394633 TENM3Q9P273 2699 aa12.25□□□□□ -0.45
PCDHA1-202ENST00000394633 RPS28P62857 69 aaKnown RBP12.24□□□□□ -0.45
PCDHA1-202ENST00000394633 DSCR8Q96T75 97 aa12.23□□□□□ -0.45
PCDHA1-202ENST00000394633 Q6ZVQ6 151 aa12.22□□□□□ -0.45
PCDHA1-202ENST00000394633 LINC01547P58512 204 aaPredicted RBP12.22□□□□□ -0.45
PCDHA1-202ENST00000394633 DPH3Q96FX2 82 aa12.22□□□□□ -0.45
PCDHA1-202ENST00000394633 H3BQ85 93 aa12.21□□□□□ -0.45
PCDHA1-202ENST00000394633 PRB2P02812 416 aaPredicted RBP12.21□□□□□ -0.45
PCDHA1-202ENST00000394633 ZNF73O43830 326 aaPredicted RBP12.21□□□□□ -0.46
PCDHA1-202ENST00000394633 HIGD2BQ4VC39 106 aa12.2□□□□□ -0.46
PCDHA1-202ENST00000394633 FAM19A5Q7Z5A7 132 aaPredicted RBP12.2□□□□□ -0.46
PCDHA1-202ENST00000394633 COX7BP24311 80 aa12.19□□□□□ -0.46
PCDHA1-202ENST00000394633 PDE6GP18545 87 aa12.19□□□□□ -0.46
PCDHA1-202ENST00000394633 HAMPP81172 84 aa12.19□□□□□ -0.46
PCDHA1-202ENST00000394633 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.19□□□□□ -0.46
PCDHA1-202ENST00000394633 VPREB1P12018 145 aa12.18□□□□□ -0.46
PCDHA1-202ENST00000394633 ELOF1P60002 83 aaKnown RBP12.18□□□□□ -0.46
PCDHA1-202ENST00000394633 WFDC10BQ8IUB3 73 aa12.18□□□□□ -0.46
PCDHA1-202ENST00000394633 KRTAP26-1Q6PEX3 210 aa12.17□□□□□ -0.46
PCDHA1-202ENST00000394633 CAMK2N2Q96S95 79 aa12.17□□□□□ -0.46
PCDHA1-202ENST00000394633 TRBV7-4A0A0J9YYF1 115 aa12.17□□□□□ -0.46
PCDHA1-202ENST00000394633 RETNQ9HD89 108 aa12.15□□□□□ -0.46
PCDHA1-202ENST00000394633 TRBV7-6A0A0J9YX20 115 aa12.14□□□□□ -0.47
PCDHA1-202ENST00000394633 OXTP01178 125 aa12.14□□□□□ -0.47
PCDHA1-202ENST00000394633 Q6ZRU5 148 aa12.14□□□□□ -0.47
PCDHA1-202ENST00000394633 C20orf197Q8N268 126 aa12.14□□□□□ -0.47
PCDHA1-202ENST00000394633 BCE1O60756 84 aa12.13□□□□□ -0.47
PCDHA1-202ENST00000394633 CXCL6P80162 114 aa12.13□□□□□ -0.47
PCDHA1-202ENST00000394633 KPRPQ5T749 579 aaPredicted RBP12.13□□□□□ -0.47
PCDHA1-202ENST00000394633 M0R378 163 aa12.13□□□□□ -0.47
PCDHA1-202ENST00000394633 C15orf56Q8N910 161 aa12.13□□□□□ -0.47
PCDHA1-202ENST00000394633 TRAV10A0A0B4J240 114 aa12.12□□□□□ -0.47
PCDHA1-202ENST00000394633 TRAV7A0A075B6U4 112 aa12.11□□□□□ -0.47
PCDHA1-202ENST00000394633 NDUFC2-KCTD14E9PQ53 114 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms