RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TM2D3Q9BRN9 247 aa7.12□□□□□ -1.27
COL6A3-205ENST00000392004 BAALC-AS2P0C853 105 aa7.12□□□□□ -1.27
COL6A3-205ENST00000392004 TIRAPP58753 221 aa7.12□□□□□ -1.27
COL6A3-205ENST00000392004 ZNF469Q96JG9 3925 aaPredicted RBP7.12□□□□□ -1.27
COL6A3-205ENST00000392004 TENM2Q9NT68 2774 aa7.12□□□□□ -1.27
COL6A3-205ENST00000392004 INAFM2P0DMQ5 153 aa7.11□□□□□ -1.27
COL6A3-205ENST00000392004 FAM19A5Q7Z5A7 132 aaPredicted RBP7.11□□□□□ -1.27
COL6A3-205ENST00000392004 C3orf22Q8N5N4 141 aa7.11□□□□□ -1.27
COL6A3-205ENST00000392004 CDC42SE2Q9NRR3 84 aa7.11□□□□□ -1.27
COL6A3-205ENST00000392004 MIR7-3HGQ8N6C7 128 aa7.11□□□□□ -1.27
COL6A3-205ENST00000392004 NCR3O14931 201 aa7.11□□□□□ -1.27
COL6A3-205ENST00000392004 UQCRQO14949 82 aa7.11□□□□□ -1.27
COL6A3-205ENST00000392004 C6orf223Q8N319 242 aa7.1□□□□□ -1.27
COL6A3-205ENST00000392004 CHCHD7Q9BUK0 85 aa7.1□□□□□ -1.27
COL6A3-205ENST00000392004 HAMPP81172 84 aa7.1□□□□□ -1.27
COL6A3-205ENST00000392004 LINC00308Q8TCZ7 52 aa7.1□□□□□ -1.27
COL6A3-205ENST00000392004 PLAC8L1A1L4L8 177 aa7.1□□□□□ -1.27
COL6A3-205ENST00000392004 USP17L23D6RBM5 183 aa7.1□□□□□ -1.27
COL6A3-205ENST00000392004 SYCNQ0VAF6 134 aa7.1□□□□□ -1.27
COL6A3-205ENST00000392004 UNQ6190/PRO20217Q6UXQ8 127 aa7.09□□□□□ -1.27
COL6A3-205ENST00000392004 DEFB105AQ8NG35 78 aa7.09□□□□□ -1.27
COL6A3-205ENST00000392004 A0A087WZ39 114 aa7.09□□□□□ -1.28
COL6A3-205ENST00000392004 COX6A2Q02221 97 aa7.09□□□□□ -1.28
COL6A3-205ENST00000392004 DMBT1Q9UGM3 2413 aaPredicted RBP7.08□□□□□ -1.28
COL6A3-205ENST00000392004 A0A096LNI7 61 aa7.08□□□□□ -1.28
COL6A3-205ENST00000392004 CD164L2Q6UWJ8 174 aa7.07□□□□□ -1.28
COL6A3-205ENST00000392004 PIK3CD-AS1Q5SR53 167 aa7.07□□□□□ -1.28
COL6A3-205ENST00000392004 LINC00242Q5T6M2 205 aa7.07□□□□□ -1.28
COL6A3-205ENST00000392004 IGKV2-28A0A075B6P5 120 aa7.06□□□□□ -1.28
COL6A3-205ENST00000392004 IGKV2D-28P01615 120 aa7.06□□□□□ -1.28
COL6A3-205ENST00000392004 SND1-IT1Q9HBX3 110 aa7.06□□□□□ -1.28
COL6A3-205ENST00000392004 ATOX1O00244 68 aa7.06□□□□□ -1.28
COL6A3-205ENST00000392004 DNAH10OSP0CZ25 163 aa7.05□□□□□ -1.28
COL6A3-205ENST00000392004 CXCL5P42830 114 aa7.05□□□□□ -1.28
COL6A3-205ENST00000392004 HIST1H4AP62805 103 aaKnown RBP7.05□□□□□ -1.28
COL6A3-205ENST00000392004 IGLV5-52A0A0A0MRZ9 124 aa7.05□□□□□ -1.28
COL6A3-205ENST00000392004 HIGD2AQ9BW72 106 aa7.05□□□□□ -1.28
COL6A3-205ENST00000392004 COX7CP15954 63 aa7.04□□□□□ -1.28
COL6A3-205ENST00000392004 TRAV13-2A0A0B4J235 113 aa7.04□□□□□ -1.28
COL6A3-205ENST00000392004 RPL37AP8A6NKH3 93 aa7.04□□□□□ -1.28
COL6A3-205ENST00000392004 PKIGQ9Y2B9 76 aa7.04□□□□□ -1.28
COL6A3-205ENST00000392004 LOC107984640A0A0U1RRK4 108 aa7.03□□□□□ -1.28
COL6A3-205ENST00000392004 C14orf177Q52M58 125 aa7.03□□□□□ -1.28
COL6A3-205ENST00000392004 SMCR5Q8TEV8 140 aa7.03□□□□□ -1.28
COL6A3-205ENST00000392004 NBDYA0A0U1RRE5 68 aa7.03□□□□□ -1.28
COL6A3-205ENST00000392004 A0A1B0GX51 115 aa7.03□□□□□ -1.28
COL6A3-205ENST00000392004 FAM104AQ969W3 186 aa7.02□□□□□ -1.29
COL6A3-205ENST00000392004 PRR3P79522 188 aaKnown RBP7.02□□□□□ -1.29
COL6A3-205ENST00000392004 ETDCA0A1B0GVM5 59 aa7.01□□□□□ -1.29
COL6A3-205ENST00000392004 hADV29S1A0JD25 119 aa7.01□□□□□ -1.29
COL6A3-205ENST00000392004 A8MTW9 85 aa7.01□□□□□ -1.29
COL6A3-205ENST00000392004 UBE2AP49459 152 aa7.01□□□□□ -1.29
COL6A3-205ENST00000392004 SDIM1Q6ZPB5 146 aa7.01□□□□□ -1.29
COL6A3-205ENST00000392004 LAMTOR3Q9UHA4 124 aa7.01□□□□□ -1.29
COL6A3-205ENST00000392004 IGLV5-45A0A087WSX0 123 aa7.01□□□□□ -1.29
COL6A3-205ENST00000392004 IGKV3D-7A0A0C4DH55 119 aa7.01□□□□□ -1.29
COL6A3-205ENST00000392004 SRRM2Q9UQ35 2752 aaKnown RBP7□□□□□ -1.29
COL6A3-205ENST00000392004 IGLV5-39A0A0G2JS06 123 aa7□□□□□ -1.29
COL6A3-205ENST00000392004 SOSTDC1Q6X4U4 206 aa7□□□□□ -1.29
COL6A3-205ENST00000392004 SMIM1B2RUZ4 78 aa6.99□□□□□ -1.29
COL6A3-205ENST00000392004 LINC01556Q5JQF7 62 aa6.99□□□□□ -1.29
COL6A3-205ENST00000392004 C14orf132Q9NPU4 83 aa6.99□□□□□ -1.29
COL6A3-205ENST00000392004 CASC10Q5T4H9 136 aa6.98□□□□□ -1.29
COL6A3-205ENST00000392004 H0YGX0 51 aa6.98□□□□□ -1.29
COL6A3-205ENST00000392004 FAM218AQ96MZ4 157 aa6.98□□□□□ -1.29
COL6A3-205ENST00000392004 Q6ZRU5 148 aa6.98□□□□□ -1.29
COL6A3-205ENST00000392004 CRYGAP11844 174 aa6.97□□□□□ -1.29
COL6A3-205ENST00000392004 RPL28P46779 137 aaKnown RBP6.97□□□□□ -1.29
COL6A3-205ENST00000392004 ENHOQ6UWT2 76 aa6.97□□□□□ -1.29
COL6A3-205ENST00000392004 CHTF8P0CG12 524 aa6.97□□□□□ -1.29
COL6A3-205ENST00000392004 C16orf90A8MZG2 172 aa6.97□□□□□ -1.29
COL6A3-205ENST00000392004 HRCT1Q6UXD1 115 aa6.97□□□□□ -1.29
COL6A3-205ENST00000392004 TMEM258P61165 79 aa6.96□□□□□ -1.29
COL6A3-205ENST00000392004 A0A1B0GUV1 79 aa6.96□□□□□ -1.3
COL6A3-205ENST00000392004 C3orf84H3BNL1 204 aa6.96□□□□□ -1.3
COL6A3-205ENST00000392004 SERP2Q8N6R1 65 aa6.96□□□□□ -1.3
COL6A3-205ENST00000392004 Q6JHZ5 121 aa6.96□□□□□ -1.3
COL6A3-205ENST00000392004 FAM19A1Q7Z5A9 133 aa6.95□□□□□ -1.3
COL6A3-205ENST00000392004 APLNQ9ULZ1 77 aa6.95□□□□□ -1.3
COL6A3-205ENST00000392004 C10orf25Q5T742 122 aa6.94□□□□□ -1.3
COL6A3-205ENST00000392004 SMIM11BQ8TCY0 68 aa6.94□□□□□ -1.3
COL6A3-205ENST00000392004 RPS28P62857 69 aaKnown RBP6.94□□□□□ -1.3
COL6A3-205ENST00000392004 FLG2Q5D862 2391 aaPredicted RBP6.94□□□□□ -1.3
COL6A3-205ENST00000392004 C4orf48Q5BLP8 95 aa6.94□□□□□ -1.3
COL6A3-205ENST00000392004 DSCR8Q96T75 97 aa6.93□□□□□ -1.3
COL6A3-205ENST00000392004 SMR3BP02814 79 aaPredicted RBP6.93□□□□□ -1.3
COL6A3-205ENST00000392004 ORMDL1Q9P0S3 153 aa6.93□□□□□ -1.3
COL6A3-205ENST00000392004 A0A087WYN8 130 aa6.93□□□□□ -1.3
COL6A3-205ENST00000392004 C1orf195Q5TG92 126 aa6.93□□□□□ -1.3
COL6A3-205ENST00000392004 LINC00337Q8N6G1 96 aa6.93□□□□□ -1.3
COL6A3-205ENST00000392004 F8WEM9 126 aa6.92□□□□□ -1.3
COL6A3-205ENST00000392004 C2orf48Q96LS8 159 aa6.92□□□□□ -1.3
COL6A3-205ENST00000392004 LINC00846Q9NV44 126 aa6.92□□□□□ -1.3
COL6A3-205ENST00000392004 A0A087WVE0 104 aa6.92□□□□□ -1.3
COL6A3-205ENST00000392004 IGHV3OR16-9A0A0B4J2B5 98 aa6.92□□□□□ -1.3
COL6A3-205ENST00000392004 H3BNG1 76 aa6.92□□□□□ -1.3
COL6A3-205ENST00000392004 IBA57-AS1B1ANH7 110 aa6.91□□□□□ -1.3
COL6A3-205ENST00000392004 C7orf33Q8WU49 177 aa6.91□□□□□ -1.3
COL6A3-205ENST00000392004 PRO0628Q9UI54 55 aa6.91□□□□□ -1.3
COL6A3-205ENST00000392004 SLPIP03973 132 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms