RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 Q6ZQY7 126 aa9.56□□□□□ -0.88
SDC1-202ENST00000381150 Q8N3U1 123 aa9.56□□□□□ -0.88
SDC1-202ENST00000381150 ANGP03950 147 aaKnown RBP9.56□□□□□ -0.88
SDC1-202ENST00000381150 LINC00474Q9P2X8 69 aa9.56□□□□□ -0.88
SDC1-202ENST00000381150 DEFB4AO15263 64 aa9.55□□□□□ -0.88
SDC1-202ENST00000381150 LINC01547P58512 204 aaPredicted RBP9.55□□□□□ -0.88
SDC1-202ENST00000381150 CSNK1G2-AS1Q8NCQ2 148 aa9.55□□□□□ -0.88
SDC1-202ENST00000381150 FAM19A3Q7Z5A8 133 aa9.55□□□□□ -0.88
SDC1-202ENST00000381150 SPATA3Q8NHX4 192 aa9.55□□□□□ -0.88
SDC1-202ENST00000381150 MRAPQ8TCY5 172 aa9.55□□□□□ -0.88
SDC1-202ENST00000381150 Q8N9L7 120 aa9.54□□□□□ -0.88
SDC1-202ENST00000381150 SMR3AQ99954 134 aa9.54□□□□□ -0.88
SDC1-202ENST00000381150 CMC4P56277 68 aaPredicted RBP9.54□□□□□ -0.88
SDC1-202ENST00000381150 H7BZZ5 65 aa9.53□□□□□ -0.88
SDC1-202ENST00000381150 KRTAP10-3P60369 221 aa9.53□□□□□ -0.88
SDC1-202ENST00000381150 ATP5EP2Q5VTU8 51 aa9.53□□□□□ -0.88
SDC1-202ENST00000381150 Q6ZVQ6 151 aa9.53□□□□□ -0.88
SDC1-202ENST00000381150 VWFP04275 2813 aa9.53□□□□□ -0.88
SDC1-202ENST00000381150 NANOS2P60321 138 aaKnown RBP9.53□□□□□ -0.88
SDC1-202ENST00000381150 HTN3P15516 51 aa9.52□□□□□ -0.89
SDC1-202ENST00000381150 C6orf223Q8N319 242 aa9.52□□□□□ -0.89
SDC1-202ENST00000381150 TM2D3Q9BRN9 247 aa9.52□□□□□ -0.89
SDC1-202ENST00000381150 XAGE1AQ9HD64 81 aa9.52□□□□□ -0.89
SDC1-202ENST00000381150 C16orf74Q96GX8 76 aa9.52□□□□□ -0.89
SDC1-202ENST00000381150 TRAV7A0A075B6U4 112 aa9.51□□□□□ -0.89
SDC1-202ENST00000381150 SERP1Q9Y6X1 66 aa9.51□□□□□ -0.89
SDC1-202ENST00000381150 TEP1Q99973 2627 aaKnown RBP9.51□□□□□ -0.89
SDC1-202ENST00000381150 PRB2P02812 416 aaPredicted RBP9.5□□□□□ -0.89
SDC1-202ENST00000381150 FASNP49327 2511 aaKnown RBP9.5□□□□□ -0.89
SDC1-202ENST00000381150 WIPF1O43516 503 aa9.5□□□□□ -0.89
SDC1-202ENST00000381150 UNQ6190/PRO20217Q6UXQ8 127 aa9.49□□□□□ -0.89
SDC1-202ENST00000381150 Q8NDZ9 215 aa9.49□□□□□ -0.89
SDC1-202ENST00000381150 HIVEP1P15822 2718 aa9.49□□□□□ -0.89
SDC1-202ENST00000381150 LRCOL1A6NCL2 159 aa9.48□□□□□ -0.89
SDC1-202ENST00000381150 Q6ZQT0 140 aa9.48□□□□□ -0.89
SDC1-202ENST00000381150 CHCHD10Q8WYQ3 142 aaPredicted RBP9.48□□□□□ -0.89
SDC1-202ENST00000381150 LYPD5Q6UWN5 251 aa9.48□□□□□ -0.89
SDC1-202ENST00000381150 LY6G6DO95868 133 aa9.47□□□□□ -0.89
SDC1-202ENST00000381150 LINC00575Q6W349 94 aa9.47□□□□□ -0.89
SDC1-202ENST00000381150 Q8IZM0 81 aa9.47□□□□□ -0.89
SDC1-202ENST00000381150 NDUFC2-KCTD14E9PQ53 114 aa9.47□□□□□ -0.89
SDC1-202ENST00000381150 C10orf25Q5T742 122 aa9.47□□□□□ -0.89
SDC1-202ENST00000381150 BAHCC1Q9P281 2608 aa9.47□□□□□ -0.89
SDC1-202ENST00000381150 OTOGQ6ZRI0 2925 aa9.47□□□□□ -0.89
SDC1-202ENST00000381150 TRBV7-6A0A0J9YX20 115 aa9.46□□□□□ -0.89
SDC1-202ENST00000381150 ZNF561-AS1K7EIQ3 104 aa9.46□□□□□ -0.89
SDC1-202ENST00000381150 PRO0628Q9UI54 55 aa9.46□□□□□ -0.89
SDC1-202ENST00000381150 ATRQ13535 2644 aa9.46□□□□□ -0.9
SDC1-202ENST00000381150 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.46□□□□□ -0.9
SDC1-202ENST00000381150 IGHV4-28A0A0C4DH34 117 aa9.45□□□□□ -0.9
SDC1-202ENST00000381150 LINC00482Q8N8I6 264 aa9.45□□□□□ -0.9
SDC1-202ENST00000381150 SMIM26A0A096LP01 95 aa9.44□□□□□ -0.9
SDC1-202ENST00000381150 HECTD1Q9ULT8 2610 aa9.44□□□□□ -0.9
SDC1-202ENST00000381150 MIFP14174 115 aa9.44□□□□□ -0.9
SDC1-202ENST00000381150 SPAG11BQ08648 103 aa9.44□□□□□ -0.9
SDC1-202ENST00000381150 DEFB105AQ8NG35 78 aa9.44□□□□□ -0.9
SDC1-202ENST00000381150 REG3AQ06141 175 aa9.43□□□□□ -0.9
SDC1-202ENST00000381150 FP248Q71RG6 208 aaPredicted RBP9.43□□□□□ -0.9
SDC1-202ENST00000381150 C3orf84H3BNL1 204 aa9.43□□□□□ -0.9
SDC1-202ENST00000381150 TRBV10-3A0A0K0K1G6 114 aa9.42□□□□□ -0.9
SDC1-202ENST00000381150 NREPQ16612 68 aa9.42□□□□□ -0.9
SDC1-202ENST00000381150 MUC7Q8TAX7 377 aa9.41□□□□□ -0.9
SDC1-202ENST00000381150 BPY2O14599 106 aa9.4□□□□□ -0.9
SDC1-202ENST00000381150 LINC00612Q8N6U2 182 aa9.4□□□□□ -0.9
SDC1-202ENST00000381150 CYSRT1A8MQ03 144 aa9.4□□□□□ -0.9
SDC1-202ENST00000381150 CD164L2Q6UWJ8 174 aa9.4□□□□□ -0.9
SDC1-202ENST00000381150 KLK12Q9UKR0 248 aa9.4□□□□□ -0.9
SDC1-202ENST00000381150 CELA1Q9UNI1 258 aa9.4□□□□□ -0.9
SDC1-202ENST00000381150 PKD1L1Q8TDX9 2849 aa9.4□□□□□ -0.91
SDC1-202ENST00000381150 TMEM254Q8TBM7 123 aa9.39□□□□□ -0.91
SDC1-202ENST00000381150 KLKP1Q107X0 134 aa9.39□□□□□ -0.91
SDC1-202ENST00000381150 LINC00167Q96N53 147 aa9.39□□□□□ -0.91
SDC1-202ENST00000381150 DIRC1Q969H9 104 aa9.38□□□□□ -0.91
SDC1-202ENST00000381150 KIAA0087Q14695 138 aa9.38□□□□□ -0.91
SDC1-202ENST00000381150 HIGD2BQ4VC39 106 aa9.38□□□□□ -0.91
SDC1-202ENST00000381150 TENM1Q9UKZ4 2725 aa9.38□□□□□ -0.91
SDC1-202ENST00000381150 X6R8D5 127 aa9.37□□□□□ -0.91
SDC1-202ENST00000381150 PRR4Q16378 134 aa9.37□□□□□ -0.91
SDC1-202ENST00000381150 PRO0255Q9UI72 69 aa9.37□□□□□ -0.91
SDC1-202ENST00000381150 NSD1Q96L73 2696 aaPredicted RBP9.37□□□□□ -0.91
SDC1-202ENST00000381150 FAM229BQ4G0N7 80 aa9.37□□□□□ -0.91
SDC1-202ENST00000381150 INAFM1C9JVW0 142 aa9.36□□□□□ -0.91
SDC1-202ENST00000381150 HIGD2AQ9BW72 106 aa9.35□□□□□ -0.91
SDC1-202ENST00000381150 COX7BP24311 80 aa9.34□□□□□ -0.91
SDC1-202ENST00000381150 DEFB135Q30KP9 77 aa9.34□□□□□ -0.91
SDC1-202ENST00000381150 ZNF73O43830 326 aaPredicted RBP9.34□□□□□ -0.91
SDC1-202ENST00000381150 COX17Q14061 63 aa9.34□□□□□ -0.91
SDC1-202ENST00000381150 FAM30AQ9NZY2 134 aa9.34□□□□□ -0.91
SDC1-202ENST00000381150 LOC110117498A0A087WWA1 95 aa9.33□□□□□ -0.92
SDC1-202ENST00000381150 FUSP35637 526 aaKnown RBP eCLIP9.33□□□□□ -0.922e-6■■□□□ 12.3
SDC1-202ENST00000381150 C1orf195Q5TG92 126 aa9.32□□□□□ -0.92
SDC1-202ENST00000381150 A0A1B0GUV1 79 aa9.32□□□□□ -0.92
SDC1-202ENST00000381150 CXCL6P80162 114 aa9.32□□□□□ -0.92
SDC1-202ENST00000381150 TRRAPQ9Y4A5 3859 aa9.31□□□□□ -0.92
SDC1-202ENST00000381150 C9orf66Q5T8R8 295 aa9.31□□□□□ -0.92
SDC1-202ENST00000381150 PDE6GP18545 87 aa9.3□□□□□ -0.92
SDC1-202ENST00000381150 TRBV7-4A0A0J9YYF1 115 aa9.29□□□□□ -0.92
SDC1-202ENST00000381150 PRYO14603 147 aa9.29□□□□□ -0.92
SDC1-202ENST00000381150 NDUFC1O43677 76 aa9.29□□□□□ -0.92
SDC1-202ENST00000381150 CAMK2N2Q96S95 79 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms