RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TRRAPQ9Y4A5 3859 aa12.56□□□□□ -0.4
CCDC3-201ENST00000378825 C4orf26Q17RF5 130 aa12.56□□□□□ -0.4
CCDC3-201ENST00000378825 S100A7L2Q5SY68 101 aa12.56□□□□□ -0.4
CCDC3-201ENST00000378825 CD164L2Q6UWJ8 174 aa12.55□□□□□ -0.4
CCDC3-201ENST00000378825 LINC00575Q6W349 94 aa12.55□□□□□ -0.4
CCDC3-201ENST00000378825 CMC4P56277 68 aaPredicted RBP12.54□□□□□ -0.4
CCDC3-201ENST00000378825 LYPD5Q6UWN5 251 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 X6R8D5 127 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 ATRQ13535 2644 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 NDUFC2O95298 119 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 UBL5Q9BZL1 73 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 PRO0255Q9UI72 69 aa12.54□□□□□ -0.4
CCDC3-201ENST00000378825 REG3AQ06141 175 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 Q6ZQT0 140 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 LINC00482Q8N8I6 264 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 LAMTOR3Q9UHA4 124 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 LINC00612Q8N6U2 182 aa12.53□□□□□ -0.4
CCDC3-201ENST00000378825 C5orf47Q569G3 176 aa12.52□□□□□ -0.41
CCDC3-201ENST00000378825 NSD1Q96L73 2696 aaPredicted RBP12.51□□□□□ -0.41
CCDC3-201ENST00000378825 RBM3P98179 157 aaKnown RBP12.51□□□□□ -0.41
CCDC3-201ENST00000378825 HAMPP81172 84 aa12.51□□□□□ -0.41
CCDC3-201ENST00000378825 Q6ZQY7 126 aa12.5□□□□□ -0.41
CCDC3-201ENST00000378825 TRAV10A0A0B4J240 114 aa12.5□□□□□ -0.41
CCDC3-201ENST00000378825 COX17Q14061 63 aa12.49□□□□□ -0.41
CCDC3-201ENST00000378825 ATP5EP2Q5VTU8 51 aa12.49□□□□□ -0.41
CCDC3-201ENST00000378825 Q5XG85 94 aa12.49□□□□□ -0.41
CCDC3-201ENST00000378825 IGHV4-28A0A0C4DH34 117 aa12.48□□□□□ -0.41
CCDC3-201ENST00000378825 SCXQ7RTU7 201 aa12.48□□□□□ -0.41
CCDC3-201ENST00000378825 LINC01547P58512 204 aaPredicted RBP12.48□□□□□ -0.41
CCDC3-201ENST00000378825 HRCT1Q6UXD1 115 aa12.48□□□□□ -0.41
CCDC3-201ENST00000378825 XAGE1AQ9HD64 81 aa12.47□□□□□ -0.41
CCDC3-201ENST00000378825 CYSRT1A8MQ03 144 aa12.46□□□□□ -0.41
CCDC3-201ENST00000378825 Q6ZVQ6 151 aa12.46□□□□□ -0.41
CCDC3-201ENST00000378825 SPAG11BQ08648 103 aa12.46□□□□□ -0.41
CCDC3-201ENST00000378825 DEFB135Q30KP9 77 aa12.46□□□□□ -0.41
CCDC3-201ENST00000378825 ZNF561-AS1K7EIQ3 104 aa12.46□□□□□ -0.42
CCDC3-201ENST00000378825 SNURFQ9Y675 71 aa12.46□□□□□ -0.42
CCDC3-201ENST00000378825 HIVEP1P15822 2718 aa12.45□□□□□ -0.42
CCDC3-201ENST00000378825 INAFM1C9JVW0 142 aa12.45□□□□□ -0.42
CCDC3-201ENST00000378825 PKD1L1Q8TDX9 2849 aa12.44□□□□□ -0.42
CCDC3-201ENST00000378825 TRBV10-3A0A0K0K1G6 114 aa12.44□□□□□ -0.42
CCDC3-201ENST00000378825 HTN3P15516 51 aa12.43□□□□□ -0.42
CCDC3-201ENST00000378825 CELA1Q9UNI1 258 aa12.43□□□□□ -0.42
CCDC3-201ENST00000378825 IGLV6-57P01721 117 aa12.42□□□□□ -0.42
CCDC3-201ENST00000378825 LOC110117498A0A087WWA1 95 aa12.41□□□□□ -0.42
CCDC3-201ENST00000378825 H7BZZ5 65 aa12.41□□□□□ -0.42
CCDC3-201ENST00000378825 KLK12Q9UKR0 248 aa12.41□□□□□ -0.42
CCDC3-201ENST00000378825 TEP1Q99973 2627 aaKnown RBP12.41□□□□□ -0.42
CCDC3-201ENST00000378825 RMI2Q96E14 147 aa12.41□□□□□ -0.42
CCDC3-201ENST00000378825 FAM236DA0A1B0GTK5 79 aa12.38□□□□□ -0.43
CCDC3-201ENST00000378825 FAM236CP0DP71 79 aa12.38□□□□□ -0.43
CCDC3-201ENST00000378825 MUC7Q8TAX7 377 aa12.38□□□□□ -0.43
CCDC3-201ENST00000378825 C6orf48Q9UBA6 75 aa12.37□□□□□ -0.43
CCDC3-201ENST00000378825 TRAV7A0A075B6U4 112 aa12.36□□□□□ -0.43
CCDC3-201ENST00000378825 DAD1P61803 113 aa12.36□□□□□ -0.43
CCDC3-201ENST00000378825 TM2D3Q9BRN9 247 aa12.36□□□□□ -0.43
CCDC3-201ENST00000378825 A0A0J9YWU9 116 aa12.35□□□□□ -0.43
CCDC3-201ENST00000378825 IGHV4-30-4P0DP06 118 aa12.35□□□□□ -0.43
CCDC3-201ENST00000378825 Q8N9L7 120 aa12.34□□□□□ -0.43
CCDC3-201ENST00000378825 HIGD2BQ4VC39 106 aa12.33□□□□□ -0.44
CCDC3-201ENST00000378825 NDUFC2-KCTD14E9PQ53 114 aa12.33□□□□□ -0.44
CCDC3-201ENST00000378825 LYRM9A8MSI8 78 aa12.32□□□□□ -0.44
CCDC3-201ENST00000378825 DIRC1Q969H9 104 aa12.32□□□□□ -0.44
CCDC3-201ENST00000378825 F8WEM9 126 aa12.31□□□□□ -0.44
CCDC3-201ENST00000378825 ZNF73O43830 326 aaPredicted RBP12.31□□□□□ -0.44
CCDC3-201ENST00000378825 C9orf66Q5T8R8 295 aa12.31□□□□□ -0.44
CCDC3-201ENST00000378825 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.31□□□□□ -0.44
CCDC3-201ENST00000378825 TRBV7-4A0A0J9YYF1 115 aa12.3□□□□□ -0.44
CCDC3-201ENST00000378825 KLKP1Q107X0 134 aa12.28□□□□□ -0.44
CCDC3-201ENST00000378825 COX7BP24311 80 aa12.28□□□□□ -0.44
CCDC3-201ENST00000378825 PRR34Q9NV39 138 aa12.28□□□□□ -0.44
CCDC3-201ENST00000378825 CXCL6P80162 114 aa12.27□□□□□ -0.45
CCDC3-201ENST00000378825 LELP1Q5T871 98 aa12.26□□□□□ -0.45
CCDC3-201ENST00000378825 Q8NAQ8 132 aa12.26□□□□□ -0.45
CCDC3-201ENST00000378825 ELOF1P60002 83 aaKnown RBP12.25□□□□□ -0.45
CCDC3-201ENST00000378825 EPM2AB3EWF7 344 aa12.24□□□□□ -0.45
CCDC3-201ENST00000378825 FLNBO75369 2602 aaKnown RBP12.24□□□□□ -0.45
CCDC3-201ENST00000378825 VPREB1P12018 145 aa12.24□□□□□ -0.45
CCDC3-201ENST00000378825 SERP1Q9Y6X1 66 aa12.24□□□□□ -0.45
CCDC3-201ENST00000378825 PDE6GP18545 87 aa12.22□□□□□ -0.45
CCDC3-201ENST00000378825 APOC4P55056 127 aa12.22□□□□□ -0.45
CCDC3-201ENST00000378825 FP248Q71RG6 208 aaPredicted RBP12.22□□□□□ -0.45
CCDC3-201ENST00000378825 WFDC10BQ8IUB3 73 aa12.22□□□□□ -0.45
CCDC3-201ENST00000378825 LINC00474Q9P2X8 69 aa12.22□□□□□ -0.45
CCDC3-201ENST00000378825 GVQW2A0A096LPI5 108 aaPredicted RBP12.21□□□□□ -0.45
CCDC3-201ENST00000378825 BPY2O14599 106 aa12.21□□□□□ -0.45
CCDC3-201ENST00000378825 Q6ZRU5 148 aa12.21□□□□□ -0.45
CCDC3-201ENST00000378825 CAMK2N2Q96S95 79 aa12.21□□□□□ -0.46
CCDC3-201ENST00000378825 BCE1O60756 84 aa12.2□□□□□ -0.46
CCDC3-201ENST00000378825 NREPQ16612 68 aa12.2□□□□□ -0.46
CCDC3-201ENST00000378825 C3orf84H3BNL1 204 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 WIPF1O43516 503 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 LINC00336Q6ZUF6 198 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 F8P00451 2351 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 ANK2Q01484 3957 aa12.19□□□□□ -0.46
CCDC3-201ENST00000378825 STAB1Q9NY15 2570 aa12.17□□□□□ -0.46
CCDC3-201ENST00000378825 LINC00528Q8N1L1 170 aa12.17□□□□□ -0.46
CCDC3-201ENST00000378825 TENM3Q9P273 2699 aa12.17□□□□□ -0.46
CCDC3-201ENST00000378825 SPART-AS1P0CW21 52 aa12.17□□□□□ -0.46
CCDC3-201ENST00000378825 DEFB105AQ8NG35 78 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms