RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 ODF3L2Q3SX64 289 aa8.89□□□□□ -0.99
VPS13A-204ENST00000376634 NBEAL1Q6ZS30 2694 aa8.88□□□□□ -0.99
VPS13A-204ENST00000376634 SPINT4Q6UDR6 99 aa8.88□□□□□ -0.99
VPS13A-204ENST00000376634 AMELXQ99217 191 aa8.88□□□□□ -0.99
VPS13A-204ENST00000376634 TSPEAR-AS2P59090 65 aa8.88□□□□□ -0.99
VPS13A-204ENST00000376634 C8orf87E5RJ46 101 aa8.87□□□□□ -0.99
VPS13A-204ENST00000376634 Q9UF83 564 aa8.86□□□□□ -0.99
VPS13A-204ENST00000376634 C6orf48Q9UBA6 75 aa8.86□□□□□ -0.99
VPS13A-204ENST00000376634 A8MTW9 85 aa8.86□□□□□ -0.99
VPS13A-204ENST00000376634 SMR3AQ99954 134 aa8.85□□□□□ -0.99
VPS13A-204ENST00000376634 LINC01561Q8N1V8 128 aa8.85□□□□□ -0.99
VPS13A-204ENST00000376634 STAB1Q9NY15 2570 aa8.84□□□□□ -0.99
VPS13A-204ENST00000376634 EDN2P20800 178 aa8.83□□□□□ -1
VPS13A-204ENST00000376634 LYPD5Q6UWN5 251 aa8.82□□□□□ -1
VPS13A-204ENST00000376634 ATP11AUNQ6ZP68 121 aa8.82□□□□□ -1
VPS13A-204ENST00000376634 MOBPQ13875 183 aa8.82□□□□□ -1
VPS13A-204ENST00000376634 ITPR3Q14573 2671 aa8.82□□□□□ -1
VPS13A-204ENST00000376634 LINC00846Q9NV44 126 aa8.82□□□□□ -1
VPS13A-204ENST00000376634 SMIM29Q86T20 159 aa8.82□□□□□ -1
VPS13A-204ENST00000376634 NHLRC4P0CG21 123 aaPredicted RBP8.82□□□□□ -1
VPS13A-204ENST00000376634 SPACA4Q8TDM5 124 aa8.82□□□□□ -1
VPS13A-204ENST00000376634 HELZ2Q9BYK8 2649 aaKnown RBP8.8□□□□□ -1
VPS13A-204ENST00000376634 COL4A2P08572 1712 aa8.8□□□□□ -1
VPS13A-204ENST00000376634 EP400Q96L91 3159 aa8.79□□□□□ -1
VPS13A-204ENST00000376634 C16orf95Q9H693 158 aa8.79□□□□□ -1
VPS13A-204ENST00000376634 C4orf26Q17RF5 130 aa8.77□□□□□ -1.01
VPS13A-204ENST00000376634 ZNF580Q9UK33 172 aa8.77□□□□□ -1.01
VPS13A-204ENST00000376634 DMBT1Q9UGM3 2413 aaPredicted RBP8.77□□□□□ -1.01
VPS13A-204ENST00000376634 Q6ZSN1 163 aa8.77□□□□□ -1.01
VPS13A-204ENST00000376634 CHD6Q8TD26 2715 aa8.77□□□□□ -1.01
VPS13A-204ENST00000376634 Q6ZRU5 148 aa8.77□□□□□ -1.01
VPS13A-204ENST00000376634 AVPP01185 164 aa8.76□□□□□ -1.01
VPS13A-204ENST00000376634 IGLV8-61A0A075B6I0 122 aa8.76□□□□□ -1.01
VPS13A-204ENST00000376634 FHL3Q13643 280 aa8.75□□□□□ -1.01
VPS13A-204ENST00000376634 C22orf24Q9Y442 160 aa8.75□□□□□ -1.01
VPS13A-204ENST00000376634 LINC00310P59036 64 aa8.75□□□□□ -1.01
VPS13A-204ENST00000376634 KIAA0087Q14695 138 aa8.75□□□□□ -1.01
VPS13A-204ENST00000376634 TRAV22A0A0B4J277 110 aa8.74□□□□□ -1.01
VPS13A-204ENST00000376634 SMCR5Q8TEV8 140 aa8.74□□□□□ -1.01
VPS13A-204ENST00000376634 CDSNQ15517 529 aa8.73□□□□□ -1.01
VPS13A-204ENST00000376634 SSBP3-AS1Q7Z2R9 100 aa8.73□□□□□ -1.01
VPS13A-204ENST00000376634 NOTCH1P46531 2555 aa8.73□□□□□ -1.01
VPS13A-204ENST00000376634 TEX15Q9BXT5 2789 aa8.73□□□□□ -1.01
VPS13A-204ENST00000376634 COX8CQ7Z4L0 72 aa8.73□□□□□ -1.01
VPS13A-204ENST00000376634 RPS28P62857 69 aaKnown RBP8.72□□□□□ -1.01
VPS13A-204ENST00000376634 A0A1B0GW54 56 aa8.72□□□□□ -1.01
VPS13A-204ENST00000376634 CDIP1Q9H305 208 aa8.72□□□□□ -1.01
VPS13A-204ENST00000376634 LINC00313P59037 77 aa8.72□□□□□ -1.01
VPS13A-204ENST00000376634 COL6A5A8TX70 2615 aa8.72□□□□□ -1.01
VPS13A-204ENST00000376634 H3BPC8 53 aa8.71□□□□□ -1.01
VPS13A-204ENST00000376634 MDFIQ99750 246 aa8.71□□□□□ -1.01
VPS13A-204ENST00000376634 SPATA3Q8NHX4 192 aa8.71□□□□□ -1.02
VPS13A-204ENST00000376634 URB1-AS1Q96HZ7 61 aa8.69□□□□□ -1.02
VPS13A-204ENST00000376634 FAM229AH3BQW9 127 aa8.69□□□□□ -1.02
VPS13A-204ENST00000376634 BCE1O60756 84 aa8.68□□□□□ -1.02
VPS13A-204ENST00000376634 SRCAPQ6ZRS2 3230 aa8.67□□□□□ -1.02
VPS13A-204ENST00000376634 IGLV5-39A0A0G2JS06 123 aa8.67□□□□□ -1.02
VPS13A-204ENST00000376634 Q8NBF4 154 aa8.67□□□□□ -1.02
VPS13A-204ENST00000376634 TYMSOSQ8TAI1 123 aa8.67□□□□□ -1.02
VPS13A-204ENST00000376634 UNC79Q9P2D8 2635 aa8.66□□□□□ -1.02
VPS13A-204ENST00000376634 KRTAP10-9P60411 292 aa8.66□□□□□ -1.02
VPS13A-204ENST00000376634 CHTF8P0CG12 524 aa8.66□□□□□ -1.02
VPS13A-204ENST00000376634 C11orf72Q8NBR9 251 aa8.66□□□□□ -1.02
VPS13A-204ENST00000376634 LINC01546A6NGU7 62 aa8.65□□□□□ -1.02
VPS13A-204ENST00000376634 Q6ZRX8 168 aa8.65□□□□□ -1.02
VPS13A-204ENST00000376634 LINC00167Q96N53 147 aa8.65□□□□□ -1.03
VPS13A-204ENST00000376634 KIF25-AS1Q9Y6Z4 181 aa8.65□□□□□ -1.03
VPS13A-204ENST00000376634 GCN1Q92616 2671 aaKnown RBP8.64□□□□□ -1.03
VPS13A-204ENST00000376634 LOC110117498A0A087WWA1 95 aa8.64□□□□□ -1.03
VPS13A-204ENST00000376634 CRIPTQ9P021 101 aa8.64□□□□□ -1.03
VPS13A-204ENST00000376634 Q6ZRP5 223 aa8.64□□□□□ -1.03
VPS13A-204ENST00000376634 A0A096LNJ9 63 aa8.63□□□□□ -1.03
VPS13A-204ENST00000376634 ELOF1P60002 83 aaKnown RBP8.63□□□□□ -1.03
VPS13A-204ENST00000376634 EPM2AB3EWF7 344 aa8.62□□□□□ -1.03
VPS13A-204ENST00000376634 IGHV3OR16-9A0A0B4J2B5 98 aa8.62□□□□□ -1.03
VPS13A-204ENST00000376634 LINC00476Q8WZB0 136 aa8.61□□□□□ -1.03
VPS13A-204ENST00000376634 C16orf90A8MZG2 172 aa8.61□□□□□ -1.03
VPS13A-204ENST00000376634 Q6ZQT0 140 aa8.61□□□□□ -1.03
VPS13A-204ENST00000376634 Q96NJ1 140 aa8.61□□□□□ -1.03
VPS13A-204ENST00000376634 LINC01600Q96MT4 127 aa8.61□□□□□ -1.03
VPS13A-204ENST00000376634 RTL8CO15255 209 aa8.6□□□□□ -1.03
VPS13A-204ENST00000376634 MAP1AP78559 2803 aaPredicted RBP8.59□□□□□ -1.03
VPS13A-204ENST00000376634 TM2D3Q9BRN9 247 aa8.59□□□□□ -1.04
VPS13A-204ENST00000376634 CEP350Q5VT06 3117 aa8.58□□□□□ -1.04
VPS13A-204ENST00000376634 LOC101927531A0A1B0GV80 90 aa8.58□□□□□ -1.04
VPS13A-204ENST00000376634 BAHCC1Q9P281 2608 aa8.57□□□□□ -1.04
VPS13A-204ENST00000376634 H3BNG1 76 aa8.56□□□□□ -1.04
VPS13A-204ENST00000376634 UQCR11O14957 56 aa8.56□□□□□ -1.04
VPS13A-204ENST00000376634 CYP4F30PQ9H0H9 118 aa8.56□□□□□ -1.04
VPS13A-204ENST00000376634 PHF5AQ7RTV0 110 aaKnown RBP8.56□□□□□ -1.04
VPS13A-204ENST00000376634 IGLV5-45A0A087WSX0 123 aa8.55□□□□□ -1.04
VPS13A-204ENST00000376634 COX6B2Q6YFQ2 88 aa8.55□□□□□ -1.04
VPS13A-204ENST00000376634 FAM218AQ96MZ4 157 aa8.54□□□□□ -1.04
VPS13A-204ENST00000376634 APLNQ9ULZ1 77 aa8.54□□□□□ -1.04
VPS13A-204ENST00000376634 LINC00315P59091 139 aa8.54□□□□□ -1.04
VPS13A-204ENST00000376634 COA5Q86WW8 74 aa8.54□□□□□ -1.04
VPS13A-204ENST00000376634 J3QL48 77 aa8.54□□□□□ -1.04
VPS13A-204ENST00000376634 TEP1Q99973 2627 aaKnown RBP8.54□□□□□ -1.04
VPS13A-204ENST00000376634 A8MWP4 228 aa8.53□□□□□ -1.04
VPS13A-204ENST00000376634 ERC2-IT1O76042 136 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 257.8 ms