RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 GAGE2BQ13066 116 aa9.54□□□□□ -0.88
SMPDL3A-201ENST00000368440 COX7B2Q8TF08 81 aa9.54□□□□□ -0.88
SMPDL3A-201ENST00000368440 VPS13BQ7Z7G8 4022 aa9.54□□□□□ -0.88
SMPDL3A-201ENST00000368440 BVES-AS1Q5T3Y7 98 aa9.53□□□□□ -0.88
SMPDL3A-201ENST00000368440 PLAC8Q9NZF1 115 aa9.53□□□□□ -0.88
SMPDL3A-201ENST00000368440 A0A0J9YXY3 114 aa9.53□□□□□ -0.88
SMPDL3A-201ENST00000368440 C9orf116Q5BN46 136 aaPredicted RBP9.53□□□□□ -0.88
SMPDL3A-201ENST00000368440 C6orf226Q5I0X4 101 aa9.53□□□□□ -0.88
SMPDL3A-201ENST00000368440 PKIGQ9Y2B9 76 aa9.53□□□□□ -0.88
SMPDL3A-201ENST00000368440 SRSF9Q13242 221 aaKnown RBP eCLIP9.52□□□□□ -0.89
SMPDL3A-201ENST00000368440 SRRM2Q9UQ35 2752 aaKnown RBP9.52□□□□□ -0.89
SMPDL3A-201ENST00000368440 A0A0U1RRA0 63 aa9.51□□□□□ -0.89
SMPDL3A-201ENST00000368440 CKS1BP61024 79 aa9.51□□□□□ -0.89
SMPDL3A-201ENST00000368440 TRBV30A0A0K0K1B3 111 aa9.51□□□□□ -0.89
SMPDL3A-201ENST00000368440 Q6ZRP5 223 aa9.51□□□□□ -0.89
SMPDL3A-201ENST00000368440 TLX1NBP0CAT3 122 aa9.5□□□□□ -0.89
SMPDL3A-201ENST00000368440 LINC00474Q9P2X8 69 aa9.5□□□□□ -0.89
SMPDL3A-201ENST00000368440 FXYD2P54710 66 aa9.49□□□□□ -0.89
SMPDL3A-201ENST00000368440 KRTAP10-4P60372 401 aaPredicted RBP9.49□□□□□ -0.89
SMPDL3A-201ENST00000368440 CEND1Q8N111 149 aa9.49□□□□□ -0.89
SMPDL3A-201ENST00000368440 NPC2P61916 151 aa9.49□□□□□ -0.89
SMPDL3A-201ENST00000368440 LBHQ53QV2 105 aaPredicted RBP9.49□□□□□ -0.89
SMPDL3A-201ENST00000368440 DAND5Q8N907 189 aa9.49□□□□□ -0.89
SMPDL3A-201ENST00000368440 A0A1W2PNN7 141 aa9.48□□□□□ -0.89
SMPDL3A-201ENST00000368440 MEIG1Q5JSS6 88 aa9.48□□□□□ -0.89
SMPDL3A-201ENST00000368440 TMEM238C9JI98 176 aa9.47□□□□□ -0.89
SMPDL3A-201ENST00000368440 GAGE2EQ4V326 116 aa9.47□□□□□ -0.89
SMPDL3A-201ENST00000368440 ADAMTSL4-AS1Q5T5F5 129 aa9.47□□□□□ -0.89
SMPDL3A-201ENST00000368440 GAGE2DQ9UEU5 116 aa9.47□□□□□ -0.89
SMPDL3A-201ENST00000368440 NDUFC2-KCTD14E9PQ53 114 aa9.47□□□□□ -0.89
SMPDL3A-201ENST00000368440 PLA2G1BP04054 148 aaKnown RBP9.47□□□□□ -0.89
SMPDL3A-201ENST00000368440 CXCL5P42830 114 aa9.47□□□□□ -0.89
SMPDL3A-201ENST00000368440 COL5A1-AS1Q5SY13 56 aa9.47□□□□□ -0.89
SMPDL3A-201ENST00000368440 TAL2Q16559 108 aa9.46□□□□□ -0.9
SMPDL3A-201ENST00000368440 LITAFQ99732 161 aa9.46□□□□□ -0.9
SMPDL3A-201ENST00000368440 FAM168BA1KXE4 195 aa9.45□□□□□ -0.9
SMPDL3A-201ENST00000368440 RPL37AP61513 92 aaKnown RBP9.45□□□□□ -0.9
SMPDL3A-201ENST00000368440 SPANXB1Q9NS25 103 aaPredicted RBP9.45□□□□□ -0.9
SMPDL3A-201ENST00000368440 SMIM13P0DJ93 91 aa9.45□□□□□ -0.9
SMPDL3A-201ENST00000368440 INAFM2P0DMQ5 153 aa9.45□□□□□ -0.9
SMPDL3A-201ENST00000368440 Q6ZVH6 145 aa9.45□□□□□ -0.9
SMPDL3A-201ENST00000368440 NHP2Q9NX24 153 aaKnown RBP9.45□□□□□ -0.9
SMPDL3A-201ENST00000368440 K7ERJ3 54 aa9.44□□□□□ -0.9
SMPDL3A-201ENST00000368440 HERV-K104P63124 156 aa9.44□□□□□ -0.9
SMPDL3A-201ENST00000368440 MUSTN1Q8IVN3 82 aa9.44□□□□□ -0.9
SMPDL3A-201ENST00000368440 PFN2P35080 140 aa9.43□□□□□ -0.9
SMPDL3A-201ENST00000368440 C9orf129Q5T035 196 aaKnown RBP9.43□□□□□ -0.9
SMPDL3A-201ENST00000368440 RAB37Q96AX2 223 aa9.43□□□□□ -0.9
SMPDL3A-201ENST00000368440 A6NDN8 102 aa9.42□□□□□ -0.9
SMPDL3A-201ENST00000368440 KRTAP7-1Q8IUC3 87 aa9.42□□□□□ -0.9
SMPDL3A-201ENST00000368440 LINC00158P58513 81 aa9.42□□□□□ -0.9
SMPDL3A-201ENST00000368440 A0A1B0GV90 55 aa9.41□□□□□ -0.9
SMPDL3A-201ENST00000368440 FAM19A5Q7Z5A7 132 aaPredicted RBP9.41□□□□□ -0.9
SMPDL3A-201ENST00000368440 C7orf33Q8WU49 177 aa9.41□□□□□ -0.9
SMPDL3A-201ENST00000368440 XAGE1AQ9HD64 81 aa9.41□□□□□ -0.9
SMPDL3A-201ENST00000368440 EIF4EBP3O60516 100 aaPredicted RBP9.4□□□□□ -0.9
SMPDL3A-201ENST00000368440 TIMM17BO60830 172 aa9.4□□□□□ -0.9
SMPDL3A-201ENST00000368440 PHF5AQ7RTV0 110 aaKnown RBP9.4□□□□□ -0.9
SMPDL3A-201ENST00000368440 SPANXDQ9BXN6 97 aa9.4□□□□□ -0.9
SMPDL3A-201ENST00000368440 SPANXCQ9NY87 97 aa9.4□□□□□ -0.9
SMPDL3A-201ENST00000368440 A4D1N5 150 aa9.39□□□□□ -0.91
SMPDL3A-201ENST00000368440 NAA38Q9BRA0 125 aaKnown RBP9.39□□□□□ -0.91
SMPDL3A-201ENST00000368440 ERG28Q9UKR5 140 aa9.39□□□□□ -0.91
SMPDL3A-201ENST00000368440 TMEM238LA0A1B0GVL6 79 aa9.38□□□□□ -0.91
SMPDL3A-201ENST00000368440 A6NJY4 79 aa9.38□□□□□ -0.91
SMPDL3A-201ENST00000368440 TAX1BP3O14907 124 aa9.38□□□□□ -0.91
SMPDL3A-201ENST00000368440 MIR7-3HGQ8N6C7 128 aa9.38□□□□□ -0.91
SMPDL3A-201ENST00000368440 RPL24P83731 157 aaKnown RBP9.38□□□□□ -0.91
SMPDL3A-201ENST00000368440 SERTAD4-AS1Q5TG53 156 aa9.37□□□□□ -0.91
SMPDL3A-201ENST00000368440 SFTA2Q6UW10 78 aa9.37□□□□□ -0.91
SMPDL3A-201ENST00000368440 LINC00308Q8TCZ7 52 aa9.37□□□□□ -0.91
SMPDL3A-201ENST00000368440 PKHD1L1Q86WI1 4243 aa9.37□□□□□ -0.91
SMPDL3A-201ENST00000368440 PRR3P79522 188 aaKnown RBP9.36□□□□□ -0.91
SMPDL3A-201ENST00000368440 SOSTDC1Q6X4U4 206 aa9.36□□□□□ -0.91
SMPDL3A-201ENST00000368440 MYCBP2O75592 4640 aa9.36□□□□□ -0.91
SMPDL3A-201ENST00000368440 KRTAP11-1Q8IUC1 163 aa9.36□□□□□ -0.91
SMPDL3A-201ENST00000368440 M0QXV9 152 aa9.35□□□□□ -0.91
SMPDL3A-201ENST00000368440 CFC1BP0CG36 223 aa9.34□□□□□ -0.91
SMPDL3A-201ENST00000368440 CFC1P0CG37 223 aa9.34□□□□□ -0.91
SMPDL3A-201ENST00000368440 FLG2Q5D862 2391 aaPredicted RBP9.34□□□□□ -0.91
SMPDL3A-201ENST00000368440 IFITM1P13164 125 aa9.34□□□□□ -0.91
SMPDL3A-201ENST00000368440 H3BUT2 72 aa9.32□□□□□ -0.92
SMPDL3A-201ENST00000368440 H7C2G1 150 aa9.32□□□□□ -0.92
SMPDL3A-201ENST00000368440 PSORS1C2Q9UIG4 136 aa9.32□□□□□ -0.92
SMPDL3A-201ENST00000368440 A0A1B0GWB2 263 aa9.32□□□□□ -0.92
SMPDL3A-201ENST00000368440 C22orf24Q9Y442 160 aa9.32□□□□□ -0.92
SMPDL3A-201ENST00000368440 COX17Q14061 63 aa9.31□□□□□ -0.92
SMPDL3A-201ENST00000368440 SND1-IT1Q9HBX3 110 aa9.31□□□□□ -0.92
SMPDL3A-201ENST00000368440 C9orf118A6NHY6 69 aa9.3□□□□□ -0.92
SMPDL3A-201ENST00000368440 COPS9Q8WXC6 57 aa9.3□□□□□ -0.92
SMPDL3A-201ENST00000368440 PRO1854Q9UHT4 67 aa9.29□□□□□ -0.92
SMPDL3A-201ENST00000368440 PLA2G2DQ9UNK4 145 aa9.29□□□□□ -0.92
SMPDL3A-201ENST00000368440 UBE2BP63146 152 aa9.28□□□□□ -0.92
SMPDL3A-201ENST00000368440 VAMP3Q15836 100 aa9.28□□□□□ -0.92
SMPDL3A-201ENST00000368440 Q8NDZ9 215 aa9.28□□□□□ -0.92
SMPDL3A-201ENST00000368440 LRP1Q07954 4544 aaKnown RBP9.28□□□□□ -0.92
SMPDL3A-201ENST00000368440 A0A0B4J2C4 111 aa9.28□□□□□ -0.92
SMPDL3A-201ENST00000368440 TSPAN13O95857 204 aa9.28□□□□□ -0.92
SMPDL3A-201ENST00000368440 Q1RN00 199 aa9.28□□□□□ -0.92
SMPDL3A-201ENST00000368440 C1orf137Q5JT78 98 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms