RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 LYPD5Q6UWN5 251 aa9.64□□□□□ -0.87
CD48-201ENST00000368045 GCN1Q92616 2671 aaKnown RBP9.63□□□□□ -0.87
CD48-201ENST00000368045 hADV29S1A0JD25 119 aa9.63□□□□□ -0.87
CD48-201ENST00000368045 COX7CP15954 63 aa9.63□□□□□ -0.87
CD48-201ENST00000368045 C9orf153Q5TBE3 101 aa9.63□□□□□ -0.87
CD48-201ENST00000368045 IGKV3D-7A0A0C4DH55 119 aa9.63□□□□□ -0.87
CD48-201ENST00000368045 ZNF561-AS1K7EIQ3 104 aa9.63□□□□□ -0.87
CD48-201ENST00000368045 FASNP49327 2511 aaKnown RBP9.62□□□□□ -0.87
CD48-201ENST00000368045 HELZ2Q9BYK8 2649 aaKnown RBP9.62□□□□□ -0.87
CD48-201ENST00000368045 LOC110117498A0A087WWA1 95 aa9.6□□□□□ -0.87
CD48-201ENST00000368045 C2orf48Q96LS8 159 aa9.6□□□□□ -0.87
CD48-201ENST00000368045 C6orf48Q9UBA6 75 aa9.6□□□□□ -0.87
CD48-201ENST00000368045 KMT2BQ9UMN6 2715 aaPredicted RBP9.59□□□□□ -0.87
CD48-201ENST00000368045 TRBV10-3A0A0K0K1G6 114 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 CRYGAP11844 174 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 PDE6GP18545 87 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 RBM3P98179 157 aaKnown RBP9.58□□□□□ -0.88
CD48-201ENST00000368045 NBEAL2Q6ZNJ1 2754 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 TRAV23DV6A0A075B6W5 121 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 TRBV7-6A0A0J9YX20 115 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 GHRHP01286 108 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 DIRC1Q969H9 104 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 UBL5Q9BZL1 73 aa9.58□□□□□ -0.88
CD48-201ENST00000368045 EGFEM1PQ0D2K5 195 aa9.57□□□□□ -0.88
CD48-201ENST00000368045 Q6ZQT0 140 aa9.57□□□□□ -0.88
CD48-201ENST00000368045 KPRPQ5T749 579 aaPredicted RBP9.56□□□□□ -0.88
CD48-201ENST00000368045 USP17L23D6RBM5 183 aa9.55□□□□□ -0.88
CD48-201ENST00000368045 F8WDY8 70 aa9.55□□□□□ -0.88
CD48-201ENST00000368045 KRTAP26-1Q6PEX3 210 aa9.55□□□□□ -0.88
CD48-201ENST00000368045 SERP2Q8N6R1 65 aa9.55□□□□□ -0.88
CD48-201ENST00000368045 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.55□□□□□ -0.88
CD48-201ENST00000368045 CAMK2N2Q96S95 79 aa9.55□□□□□ -0.88
CD48-201ENST00000368045 LAMTOR3Q9UHA4 124 aa9.55□□□□□ -0.88
CD48-201ENST00000368045 VWFP04275 2813 aa9.54□□□□□ -0.88
CD48-201ENST00000368045 NOTCH2Q04721 2471 aa9.54□□□□□ -0.88
CD48-201ENST00000368045 A0A087WVE0 104 aa9.53□□□□□ -0.88
CD48-201ENST00000368045 ZNF73O43830 326 aaPredicted RBP9.53□□□□□ -0.88
CD48-201ENST00000368045 COX7BP24311 80 aa9.53□□□□□ -0.88
CD48-201ENST00000368045 Q6ZQY7 126 aa9.53□□□□□ -0.88
CD48-201ENST00000368045 WFDC10BQ8IUB3 73 aa9.53□□□□□ -0.88
CD48-201ENST00000368045 M0R378 163 aa9.52□□□□□ -0.88
CD48-201ENST00000368045 VPREB1P12018 145 aa9.52□□□□□ -0.88
CD48-201ENST00000368045 XAGE1AQ9HD64 81 aa9.52□□□□□ -0.88
CD48-201ENST00000368045 NSD1Q96L73 2696 aaPredicted RBP9.52□□□□□ -0.89
CD48-201ENST00000368045 ELOF1P60002 83 aaKnown RBP9.52□□□□□ -0.89
CD48-201ENST00000368045 SMIM20Q8N5G0 67 aa9.52□□□□□ -0.89
CD48-201ENST00000368045 C3orf56Q8N813 242 aa9.52□□□□□ -0.89
CD48-201ENST00000368045 DSCR8Q96T75 97 aa9.52□□□□□ -0.89
CD48-201ENST00000368045 NDUFC2-KCTD14E9PQ53 114 aa9.5□□□□□ -0.89
CD48-201ENST00000368045 HIGD2BQ4VC39 106 aa9.5□□□□□ -0.89
CD48-201ENST00000368045 Q6ZTC4 211 aa9.5□□□□□ -0.89
CD48-201ENST00000368045 C15orf56Q8N910 161 aa9.5□□□□□ -0.89
CD48-201ENST00000368045 SVIPQ8NHG7 77 aa9.5□□□□□ -0.89
CD48-201ENST00000368045 LINC01556Q5JQF7 62 aa9.49□□□□□ -0.89
CD48-201ENST00000368045 Q6ZRU5 148 aa9.49□□□□□ -0.89
CD48-201ENST00000368045 RETNQ9HD89 108 aa9.49□□□□□ -0.89
CD48-201ENST00000368045 OTOGQ6ZRI0 2925 aa9.48□□□□□ -0.89
CD48-201ENST00000368045 BCE1O60756 84 aa9.48□□□□□ -0.89
CD48-201ENST00000368045 C1orf43Q9BWL3 253 aa9.48□□□□□ -0.89
CD48-201ENST00000368045 KRTAP10-11P60412 298 aa9.47□□□□□ -0.89
CD48-201ENST00000368045 UPK3BQ9BT76 320 aa9.47□□□□□ -0.89
CD48-201ENST00000368045 ESRGQ1W209 222 aa9.47□□□□□ -0.89
CD48-201ENST00000368045 TRBV7-4A0A0J9YYF1 115 aa9.46□□□□□ -0.9
CD48-201ENST00000368045 OXLD1Q5BKU9 147 aa9.46□□□□□ -0.9
CD48-201ENST00000368045 TENM1Q9UKZ4 2725 aa9.45□□□□□ -0.9
CD48-201ENST00000368045 FAM19A1Q7Z5A9 133 aa9.45□□□□□ -0.9
CD48-201ENST00000368045 CXCL6P80162 114 aa9.45□□□□□ -0.9
CD48-201ENST00000368045 Q6ZVQ6 151 aa9.45□□□□□ -0.9
CD48-201ENST00000368045 HECTD1Q9ULT8 2610 aa9.44□□□□□ -0.9
CD48-201ENST00000368045 TMEM258P61165 79 aa9.44□□□□□ -0.9
CD48-201ENST00000368045 LINC00528Q8N1L1 170 aa9.44□□□□□ -0.9
CD48-201ENST00000368045 LINC01547P58512 204 aaPredicted RBP9.43□□□□□ -0.9
CD48-201ENST00000368045 DEFB131BA0A096LNP1 70 aa9.42□□□□□ -0.9
CD48-201ENST00000368045 SYCNQ0VAF6 134 aa9.42□□□□□ -0.9
CD48-201ENST00000368045 TEP1Q99973 2627 aaKnown RBP9.42□□□□□ -0.9
CD48-201ENST00000368045 M0R2N4 97 aa9.42□□□□□ -0.9
CD48-201ENST00000368045 ATRQ13535 2644 aa9.42□□□□□ -0.9
CD48-201ENST00000368045 IGKV2D-24A0A075B6R9 120 aa9.41□□□□□ -0.9
CD48-201ENST00000368045 Q6ZRP5 223 aa9.41□□□□□ -0.9
CD48-201ENST00000368045 DNAH10OSP0CZ25 163 aa9.4□□□□□ -0.9
CD48-201ENST00000368045 RPS28P62857 69 aaKnown RBP9.4□□□□□ -0.9
CD48-201ENST00000368045 C11orf45Q8TAV5 145 aa9.4□□□□□ -0.9
CD48-201ENST00000368045 J3KT08 172 aa9.4□□□□□ -0.91
CD48-201ENST00000368045 HAMPP81172 84 aa9.4□□□□□ -0.91
CD48-201ENST00000368045 HIVEP1P15822 2718 aa9.39□□□□□ -0.91
CD48-201ENST00000368045 KCNQ1DNQ9H478 68 aa9.39□□□□□ -0.91
CD48-201ENST00000368045 TLX1NBP0CAT3 122 aa9.38□□□□□ -0.91
CD48-201ENST00000368045 NKAPP1Q8N9T2 125 aa9.37□□□□□ -0.91
CD48-201ENST00000368045 CYSTM1Q9H1C7 97 aa9.37□□□□□ -0.91
CD48-201ENST00000368045 PLA2G2DQ9UNK4 145 aa9.37□□□□□ -0.91
CD48-201ENST00000368045 TRAV7A0A075B6U4 112 aa9.37□□□□□ -0.91
CD48-201ENST00000368045 IGLV5-37A0A075B6J1 123 aa9.34□□□□□ -0.91
CD48-201ENST00000368045 LOC107984640A0A0U1RRK4 108 aa9.34□□□□□ -0.91
CD48-201ENST00000368045 KRTAP24-1Q3LI83 254 aa9.33□□□□□ -0.92
CD48-201ENST00000368045 C7orf33Q8WU49 177 aa9.33□□□□□ -0.92
CD48-201ENST00000368045 TRRAPQ9Y4A5 3859 aa9.33□□□□□ -0.92
CD48-201ENST00000368045 TRAV10A0A0B4J240 114 aa9.32□□□□□ -0.92
CD48-201ENST00000368045 MRAPQ8TCY5 172 aa9.32□□□□□ -0.92
CD48-201ENST00000368045 DHRS4-AS1Q9P1J3 65 aa9.32□□□□□ -0.92
CD48-201ENST00000368045 SERTAD4-AS1Q5TG53 156 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms