RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 LCE6AA0A183 80 aa11.78□□□□□ -0.52
SMARCD3-202ENST00000356800 A0A087WTM6 91 aa11.78□□□□□ -0.52
SMARCD3-202ENST00000356800 NDUFC2-KCTD14E9PQ53 114 aa11.78□□□□□ -0.52
SMARCD3-202ENST00000356800 NDUFC2O95298 119 aa11.77□□□□□ -0.53
SMARCD3-202ENST00000356800 CNBPP62633 177 aaKnown RBP11.77□□□□□ -0.53
SMARCD3-202ENST00000356800 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.76□□□□□ -0.53
SMARCD3-202ENST00000356800 IGKV2-28A0A075B6P5 120 aa11.76□□□□□ -0.53
SMARCD3-202ENST00000356800 IGKV2D-28P01615 120 aa11.76□□□□□ -0.53
SMARCD3-202ENST00000356800 FABP2P12104 132 aa11.76□□□□□ -0.53
SMARCD3-202ENST00000356800 VAMP3Q15836 100 aa11.76□□□□□ -0.53
SMARCD3-202ENST00000356800 TRAV13-2A0A0B4J235 113 aa11.75□□□□□ -0.53
SMARCD3-202ENST00000356800 Q8N814 137 aa11.75□□□□□ -0.53
SMARCD3-202ENST00000356800 RTL8CO15255 209 aa11.75□□□□□ -0.53
SMARCD3-202ENST00000356800 TLX1NBP0CAT3 122 aa11.75□□□□□ -0.53
SMARCD3-202ENST00000356800 RPL13AP40429 203 aaKnown RBP11.74□□□□□ -0.53
SMARCD3-202ENST00000356800 Q6ZRP5 223 aa11.74□□□□□ -0.53
SMARCD3-202ENST00000356800 LINC00337Q8N6G1 96 aa11.73□□□□□ -0.53
SMARCD3-202ENST00000356800 H7C2G1 150 aa11.71□□□□□ -0.53
SMARCD3-202ENST00000356800 TNP2Q05952 138 aa11.71□□□□□ -0.53
SMARCD3-202ENST00000356800 Q1RN00 199 aa11.71□□□□□ -0.53
SMARCD3-202ENST00000356800 XAGE1AQ9HD64 81 aa11.71□□□□□ -0.53
SMARCD3-202ENST00000356800 HECTD4Q9Y4D8 3996 aa11.71□□□□□ -0.53
SMARCD3-202ENST00000356800 Q8NDZ9 215 aa11.71□□□□□ -0.54
SMARCD3-202ENST00000356800 UBE2V1Q13404 147 aa11.7□□□□□ -0.54
SMARCD3-202ENST00000356800 GAGE2EQ4V326 116 aa11.7□□□□□ -0.54
SMARCD3-202ENST00000356800 GAGE2DQ9UEU5 116 aa11.7□□□□□ -0.54
SMARCD3-202ENST00000356800 K7EP34 96 aa11.69□□□□□ -0.54
SMARCD3-202ENST00000356800 LYRM7Q5U5X0 104 aa11.69□□□□□ -0.54
SMARCD3-202ENST00000356800 SPCS1Q9Y6A9 102 aa11.69□□□□□ -0.54
SMARCD3-202ENST00000356800 GAGE10A6NGK3 116 aa11.68□□□□□ -0.54
SMARCD3-202ENST00000356800 RPL18AQ02543 176 aaKnown RBP11.68□□□□□ -0.54
SMARCD3-202ENST00000356800 GTF2H5Q6ZYL4 71 aa11.68□□□□□ -0.54
SMARCD3-202ENST00000356800 RYR2Q92736 4967 aa11.68□□□□□ -0.54
SMARCD3-202ENST00000356800 PSMB2P49721 201 aa11.68□□□□□ -0.54
SMARCD3-202ENST00000356800 KMT2CQ8NEZ4 4911 aaKnown RBP11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 FAT2Q9NYQ8 4349 aa11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 DNAH11Q96DT5 4516 aa11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 LOC107984640A0A0U1RRK4 108 aa11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 TRIAP1O43715 76 aa11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 FUSP35637 526 aaKnown RBP eCLIP11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 PRR3P79522 188 aaKnown RBP11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 C9orf129Q5T035 196 aaKnown RBP11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 C9orf163Q8N9P6 203 aa11.67□□□□□ -0.54
SMARCD3-202ENST00000356800 TRBV10-2A0A0K0K1G8 114 aa11.66□□□□□ -0.54
SMARCD3-202ENST00000356800 LINC01620Q4KN68 170 aa11.65□□□□□ -0.54
SMARCD3-202ENST00000356800 TRBV20-1A0A075B6N2 111 aa11.65□□□□□ -0.55
SMARCD3-202ENST00000356800 SCGB1C2P0DMR2 95 aa11.65□□□□□ -0.55
SMARCD3-202ENST00000356800 GAGE2BQ13066 116 aa11.65□□□□□ -0.55
SMARCD3-202ENST00000356800 COX6CP09669 75 aa11.64□□□□□ -0.55
SMARCD3-202ENST00000356800 RPL28P46779 137 aaKnown RBP11.64□□□□□ -0.55
SMARCD3-202ENST00000356800 TMEM126AQ9H061 195 aa11.64□□□□□ -0.55
SMARCD3-202ENST00000356800 VPREB1P12018 145 aa11.63□□□□□ -0.55
SMARCD3-202ENST00000356800 OR13C6PQ8NH95 151 aa11.63□□□□□ -0.55
SMARCD3-202ENST00000356800 A0A096LNI7 61 aa11.62□□□□□ -0.55
SMARCD3-202ENST00000356800 NCR3O14931 201 aa11.62□□□□□ -0.55
SMARCD3-202ENST00000356800 SDIM1Q6ZPB5 146 aa11.62□□□□□ -0.55
SMARCD3-202ENST00000356800 SMIM11BQ8TCY0 68 aa11.62□□□□□ -0.55
SMARCD3-202ENST00000356800 PLA2G2DQ9UNK4 145 aa11.62□□□□□ -0.55
SMARCD3-202ENST00000356800 C16orf90A8MZG2 172 aa11.6□□□□□ -0.55
SMARCD3-202ENST00000356800 TCL1BO95988 128 aa11.6□□□□□ -0.55
SMARCD3-202ENST00000356800 IGLV6-57P01721 117 aa11.6□□□□□ -0.55
SMARCD3-202ENST00000356800 PKD1P98161 4303 aa11.6□□□□□ -0.55
SMARCD3-202ENST00000356800 FAM168BA1KXE4 195 aa11.59□□□□□ -0.55
SMARCD3-202ENST00000356800 S100A7L2Q5SY68 101 aa11.59□□□□□ -0.55
SMARCD3-202ENST00000356800 SERTAD4-AS1Q5TG53 156 aa11.59□□□□□ -0.55
SMARCD3-202ENST00000356800 KRTAP7-1Q8IUC3 87 aa11.59□□□□□ -0.55
SMARCD3-202ENST00000356800 IGKV2-24A0A0C4DH68 120 aa11.58□□□□□ -0.56
SMARCD3-202ENST00000356800 H3BMG7 143 aa11.58□□□□□ -0.56
SMARCD3-202ENST00000356800 M0R378 163 aa11.58□□□□□ -0.56
SMARCD3-202ENST00000356800 CHTF8P0CG12 524 aa11.58□□□□□ -0.56
SMARCD3-202ENST00000356800 KRTAP10-2P60368 255 aa11.58□□□□□ -0.56
SMARCD3-202ENST00000356800 PKIGQ9Y2B9 76 aa11.58□□□□□ -0.56
SMARCD3-202ENST00000356800 IGLV5-52A0A0A0MRZ9 124 aa11.57□□□□□ -0.56
SMARCD3-202ENST00000356800 DNAH5Q8TE73 4624 aa11.56□□□□□ -0.56
SMARCD3-202ENST00000356800 IGLV5-37A0A075B6J1 123 aa11.55□□□□□ -0.56
SMARCD3-202ENST00000356800 ATXN8Q156A1 80 aa11.55□□□□□ -0.56
SMARCD3-202ENST00000356800 PANO1I0J062 215 aa11.55□□□□□ -0.56
SMARCD3-202ENST00000356800 TRBV10-3A0A0K0K1G6 114 aa11.53□□□□□ -0.56
SMARCD3-202ENST00000356800 LST1O00453 97 aa11.53□□□□□ -0.56
SMARCD3-202ENST00000356800 CLEC2BQ92478 149 aa11.53□□□□□ -0.56
SMARCD3-202ENST00000356800 H0YGX0 51 aa11.52□□□□□ -0.56
SMARCD3-202ENST00000356800 FAM19A5Q7Z5A7 132 aaPredicted RBP11.52□□□□□ -0.56
SMARCD3-202ENST00000356800 NKAPP1Q8N9T2 125 aa11.52□□□□□ -0.56
SMARCD3-202ENST00000356800 A0A1W2PNN7 141 aa11.52□□□□□ -0.57
SMARCD3-202ENST00000356800 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.52□□□□□ -0.57
SMARCD3-202ENST00000356800 LINC00336Q6ZUF6 198 aa11.51□□□□□ -0.57
SMARCD3-202ENST00000356800 CBY1Q9Y3M2 126 aa11.51□□□□□ -0.57
SMARCD3-202ENST00000356800 F8W1H4 67 aa11.5□□□□□ -0.57
SMARCD3-202ENST00000356800 TRAV23DV6A0A075B6W5 121 aa11.49□□□□□ -0.57
SMARCD3-202ENST00000356800 C7orf33Q8WU49 177 aa11.49□□□□□ -0.57
SMARCD3-202ENST00000356800 PRO0461Q9UI25 63 aa11.49□□□□□ -0.57
SMARCD3-202ENST00000356800 C22orf24Q9Y442 160 aa11.49□□□□□ -0.57
SMARCD3-202ENST00000356800 C6orf99Q4VX62 202 aa11.49□□□□□ -0.57
SMARCD3-202ENST00000356800 SPACA4Q8TDM5 124 aa11.49□□□□□ -0.57
SMARCD3-202ENST00000356800 LINC00474Q9P2X8 69 aa11.49□□□□□ -0.57
SMARCD3-202ENST00000356800 FAM218AQ96MZ4 157 aa11.47□□□□□ -0.57
SMARCD3-202ENST00000356800 TRACP01848 142 aa11.46□□□□□ -0.57
SMARCD3-202ENST00000356800 KCNQ1DNQ9H478 68 aa11.46□□□□□ -0.57
SMARCD3-202ENST00000356800 RYR3Q15413 4870 aa11.46□□□□□ -0.57
SMARCD3-202ENST00000356800 ZNF73O43830 326 aaPredicted RBP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms