RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 Q6ZQT0 140 aa7.57□□□□□ -1.2
SYNE1-202ENST00000347037 ZNF561-AS1K7EIQ3 104 aa7.56□□□□□ -1.2
SYNE1-202ENST00000347037 Q6ZQY7 126 aa7.56□□□□□ -1.2
SYNE1-202ENST00000347037 SPAG11BQ08648 103 aa7.56□□□□□ -1.2
SYNE1-202ENST00000347037 HRCT1Q6UXD1 115 aa7.56□□□□□ -1.2
SYNE1-202ENST00000347037 SPATA3Q8NHX4 192 aa7.56□□□□□ -1.2
SYNE1-202ENST00000347037 HTN3P15516 51 aa7.56□□□□□ -1.2
SYNE1-202ENST00000347037 LINC01547P58512 204 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-202ENST00000347037 LYPD5Q6UWN5 251 aa7.55□□□□□ -1.2
SYNE1-202ENST00000347037 SCXQ7RTU7 201 aa7.55□□□□□ -1.2
SYNE1-202ENST00000347037 LINC00482Q8N8I6 264 aa7.55□□□□□ -1.2
SYNE1-202ENST00000347037 SNURFQ9Y675 71 aa7.54□□□□□ -1.2
SYNE1-202ENST00000347037 Q6ZVQ6 151 aa7.54□□□□□ -1.2
SYNE1-202ENST00000347037 X6R8D5 127 aa7.54□□□□□ -1.2
SYNE1-202ENST00000347037 TRBV10-3A0A0K0K1G6 114 aa7.54□□□□□ -1.2
SYNE1-202ENST00000347037 FAM236DA0A1B0GTK5 79 aa7.54□□□□□ -1.2
SYNE1-202ENST00000347037 FAM236CP0DP71 79 aa7.54□□□□□ -1.2
SYNE1-202ENST00000347037 XAGE1AQ9HD64 81 aa7.54□□□□□ -1.2
SYNE1-202ENST00000347037 CYSRT1A8MQ03 144 aa7.53□□□□□ -1.2
SYNE1-202ENST00000347037 TRAV10A0A0B4J240 114 aa7.53□□□□□ -1.2
SYNE1-202ENST00000347037 IGHV4-28A0A0C4DH34 117 aa7.53□□□□□ -1.2
SYNE1-202ENST00000347037 DEFB135Q30KP9 77 aa7.53□□□□□ -1.2
SYNE1-202ENST00000347037 LINC00612Q8N6U2 182 aa7.52□□□□□ -1.21
SYNE1-202ENST00000347037 KLK12Q9UKR0 248 aa7.51□□□□□ -1.21
SYNE1-202ENST00000347037 DAD1P61803 113 aa7.51□□□□□ -1.21
SYNE1-202ENST00000347037 TRAV7A0A075B6U4 112 aa7.51□□□□□ -1.21
SYNE1-202ENST00000347037 LOC110117498A0A087WWA1 95 aa7.51□□□□□ -1.21
SYNE1-202ENST00000347037 Q5XG85 94 aa7.51□□□□□ -1.21
SYNE1-202ENST00000347037 ITPR2Q14571 2701 aa7.51□□□□□ -1.21
SYNE1-202ENST00000347037 NDUFC2-KCTD14E9PQ53 114 aa7.5□□□□□ -1.21
SYNE1-202ENST00000347037 HELZ2Q9BYK8 2649 aaKnown RBP7.5□□□□□ -1.21
SYNE1-202ENST00000347037 OTOGQ6ZRI0 2925 aa7.5□□□□□ -1.21
SYNE1-202ENST00000347037 RMI2Q96E14 147 aa7.5□□□□□ -1.21
SYNE1-202ENST00000347037 DIRC1Q969H9 104 aa7.49□□□□□ -1.21
SYNE1-202ENST00000347037 IGLV6-57P01721 117 aa7.48□□□□□ -1.21
SYNE1-202ENST00000347037 MUC7Q8TAX7 377 aa7.48□□□□□ -1.21
SYNE1-202ENST00000347037 C16orf95Q9H693 158 aa7.48□□□□□ -1.21
SYNE1-202ENST00000347037 H7BZZ5 65 aa7.48□□□□□ -1.21
SYNE1-202ENST00000347037 LYRM9A8MSI8 78 aa7.48□□□□□ -1.21
SYNE1-202ENST00000347037 HIVEP2P31629 2446 aa7.47□□□□□ -1.21
SYNE1-202ENST00000347037 F8WEM9 126 aa7.47□□□□□ -1.21
SYNE1-202ENST00000347037 CELA1Q9UNI1 258 aa7.47□□□□□ -1.21
SYNE1-202ENST00000347037 ZNF73O43830 326 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-202ENST00000347037 COX7BP24311 80 aa7.46□□□□□ -1.22
SYNE1-202ENST00000347037 PDE6GP18545 87 aa7.46□□□□□ -1.22
SYNE1-202ENST00000347037 KRTAP1-1Q07627 177 aa7.46□□□□□ -1.22
SYNE1-202ENST00000347037 HIGD2BQ4VC39 106 aa7.46□□□□□ -1.22
SYNE1-202ENST00000347037 TM2D3Q9BRN9 247 aa7.45□□□□□ -1.22
SYNE1-202ENST00000347037 C6orf48Q9UBA6 75 aa7.45□□□□□ -1.22
SYNE1-202ENST00000347037 A0A0J9YWU9 116 aa7.45□□□□□ -1.22
SYNE1-202ENST00000347037 IGHV4-30-4P0DP06 118 aa7.45□□□□□ -1.22
SYNE1-202ENST00000347037 UNC79Q9P2D8 2635 aa7.44□□□□□ -1.22
SYNE1-202ENST00000347037 CXCL6P80162 114 aa7.44□□□□□ -1.22
SYNE1-202ENST00000347037 SERP1Q9Y6X1 66 aa7.44□□□□□ -1.22
SYNE1-202ENST00000347037 KRTAP10-3P60369 221 aa7.44□□□□□ -1.22
SYNE1-202ENST00000347037 Q8N9L7 120 aa7.44□□□□□ -1.22
SYNE1-202ENST00000347037 C9orf66Q5T8R8 295 aa7.43□□□□□ -1.22
SYNE1-202ENST00000347037 J3QKU1 62 aa7.43□□□□□ -1.22
SYNE1-202ENST00000347037 KLKP1Q107X0 134 aa7.43□□□□□ -1.22
SYNE1-202ENST00000347037 LELP1Q5T871 98 aa7.43□□□□□ -1.22
SYNE1-202ENST00000347037 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-202ENST00000347037 VWFP04275 2813 aa7.43□□□□□ -1.22
SYNE1-202ENST00000347037 CAMK2N2Q96S95 79 aa7.42□□□□□ -1.22
SYNE1-202ENST00000347037 BCE1O60756 84 aa7.42□□□□□ -1.22
SYNE1-202ENST00000347037 TRBV7-4A0A0J9YYF1 115 aa7.41□□□□□ -1.22
SYNE1-202ENST00000347037 H3BQ85 93 aa7.41□□□□□ -1.22
SYNE1-202ENST00000347037 ELOF1P60002 83 aaKnown RBP7.4□□□□□ -1.22
SYNE1-202ENST00000347037 NREPQ16612 68 aa7.4□□□□□ -1.22
SYNE1-202ENST00000347037 APOC4P55056 127 aa7.4□□□□□ -1.22
SYNE1-202ENST00000347037 BPY2O14599 106 aa7.4□□□□□ -1.23
SYNE1-202ENST00000347037 CMYA5Q8N3K9 4069 aa7.4□□□□□ -1.23
SYNE1-202ENST00000347037 SPART-AS1P0CW21 52 aa7.39□□□□□ -1.23
SYNE1-202ENST00000347037 DEFB105AQ8NG35 78 aa7.39□□□□□ -1.23
SYNE1-202ENST00000347037 SMR3AQ99954 134 aa7.39□□□□□ -1.23
SYNE1-202ENST00000347037 MIFP14174 115 aa7.39□□□□□ -1.23
SYNE1-202ENST00000347037 C3orf84H3BNL1 204 aa7.39□□□□□ -1.23
SYNE1-202ENST00000347037 WIPF1O43516 503 aa7.39□□□□□ -1.23
SYNE1-202ENST00000347037 PRR34Q9NV39 138 aa7.39□□□□□ -1.23
SYNE1-202ENST00000347037 GVQW2A0A096LPI5 108 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-202ENST00000347037 Q8NAQ8 132 aa7.37□□□□□ -1.23
SYNE1-202ENST00000347037 VPREB1P12018 145 aa7.37□□□□□ -1.23
SYNE1-202ENST00000347037 Q6ZRU5 148 aa7.37□□□□□ -1.23
SYNE1-202ENST00000347037 TMEM254Q8TBM7 123 aa7.36□□□□□ -1.23
SYNE1-202ENST00000347037 TRBV7-6A0A0J9YX20 115 aa7.36□□□□□ -1.23
SYNE1-202ENST00000347037 M0R378 163 aa7.36□□□□□ -1.23
SYNE1-202ENST00000347037 WFDC10BQ8IUB3 73 aa7.36□□□□□ -1.23
SYNE1-202ENST00000347037 LINC00474Q9P2X8 69 aa7.36□□□□□ -1.23
SYNE1-202ENST00000347037 LINC00336Q6ZUF6 198 aa7.36□□□□□ -1.23
SYNE1-202ENST00000347037 SMIM26A0A096LP01 95 aa7.35□□□□□ -1.23
SYNE1-202ENST00000347037 NDUFC1O43677 76 aa7.34□□□□□ -1.23
SYNE1-202ENST00000347037 FP248Q71RG6 208 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-202ENST00000347037 EPM2AB3EWF7 344 aa7.34□□□□□ -1.23
SYNE1-202ENST00000347037 LINC00528Q8N1L1 170 aa7.34□□□□□ -1.24
SYNE1-202ENST00000347037 EGFEM1PQ0D2K5 195 aa7.33□□□□□ -1.24
SYNE1-202ENST00000347037 IGKV4-1P06312 121 aa7.32□□□□□ -1.24
SYNE1-202ENST00000347037 NOTCH2Q04721 2471 aa7.32□□□□□ -1.24
SYNE1-202ENST00000347037 MPLKIPQ8TAP9 179 aa7.32□□□□□ -1.24
SYNE1-202ENST00000347037 Q6ZRP5 223 aa7.31□□□□□ -1.24
SYNE1-202ENST00000347037 NKAPP1Q8N9T2 125 aa7.31□□□□□ -1.24
SYNE1-202ENST00000347037 IGKV2D-24A0A075B6R9 120 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms