RNA–Protein interactions for RNA: ENST00000346501.8

TSPAN4-201, Transcript of tetraspanin 4, humanhuman

TSL 3 BASIC

Gene TSPAN4, Length 882 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-201ENST00000346501 IGKCP01834 107 aa9.59□□□□□ -0.87
TSPAN4-201ENST00000346501 LRP1Q07954 4544 aaKnown RBP9.59□□□□□ -0.87
TSPAN4-201ENST00000346501 A0A0U1RRA0 63 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BKO60814 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BJP06899 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BOP23527 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BBP33778 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BDP58876 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BCP62807 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST2H2BEQ16778 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BHQ93079 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BNQ99877 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 HIST1H2BMQ99879 126 aa9.58□□□□□ -0.88
TSPAN4-201ENST00000346501 LEPROTO15243 131 aa9.57□□□□□ -0.88
TSPAN4-201ENST00000346501 UBE2AP49459 152 aa9.57□□□□□ -0.88
TSPAN4-201ENST00000346501 KRTAP10-8P60410 259 aa9.57□□□□□ -0.88
TSPAN4-201ENST00000346501 IGKV2-28A0A075B6P5 120 aa9.56□□□□□ -0.88
TSPAN4-201ENST00000346501 IGKV2D-28P01615 120 aa9.56□□□□□ -0.88
TSPAN4-201ENST00000346501 VPREB1P12018 145 aa9.56□□□□□ -0.88
TSPAN4-201ENST00000346501 LGALS3P17931 250 aaKnown RBP9.56□□□□□ -0.88
TSPAN4-201ENST00000346501 IGLV1-50A0A075B6I6 118 aa9.55□□□□□ -0.88
TSPAN4-201ENST00000346501 SMIM13P0DJ93 91 aa9.55□□□□□ -0.88
TSPAN4-201ENST00000346501 RPL13AP40429 203 aaKnown RBP9.55□□□□□ -0.88
TSPAN4-201ENST00000346501 NMUP48645 174 aa9.55□□□□□ -0.88
TSPAN4-201ENST00000346501 PMCHL2Q9BQD1 86 aa9.55□□□□□ -0.88
TSPAN4-201ENST00000346501 FAT3Q8TDW7 4589 aa9.55□□□□□ -0.88
TSPAN4-201ENST00000346501 J3QQQ9 107 aa9.54□□□□□ -0.88
TSPAN4-201ENST00000346501 S100A12P80511 92 aa9.53□□□□□ -0.88
TSPAN4-201ENST00000346501 BOD1L2Q8IYS8 172 aa9.53□□□□□ -0.88
TSPAN4-201ENST00000346501 MIR7-3HGQ8N6C7 128 aa9.53□□□□□ -0.88
TSPAN4-201ENST00000346501 SYS1-DBNDD2H3BUS1 97 aa9.52□□□□□ -0.89
TSPAN4-201ENST00000346501 M0R378 163 aa9.52□□□□□ -0.89
TSPAN4-201ENST00000346501 PRR26Q8N8Z3 221 aa9.52□□□□□ -0.89
TSPAN4-201ENST00000346501 MIEN1Q9BRT3 115 aa9.52□□□□□ -0.89
TSPAN4-201ENST00000346501 PET117Q6UWS5 81 aa9.5□□□□□ -0.89
TSPAN4-201ENST00000346501 FAM19A1Q7Z5A9 133 aa9.5□□□□□ -0.89
TSPAN4-201ENST00000346501 IGKV2D-26A0A0A0MRZ7 120 aa9.49□□□□□ -0.89
TSPAN4-201ENST00000346501 TMEM126AQ9H061 195 aa9.49□□□□□ -0.89
TSPAN4-201ENST00000346501 C20orf202A1L168 122 aa9.47□□□□□ -0.89
TSPAN4-201ENST00000346501 E9PLD3 99 aa9.47□□□□□ -0.89
TSPAN4-201ENST00000346501 KRTAP1-4P0C5Y4 121 aa9.47□□□□□ -0.89
TSPAN4-201ENST00000346501 TSPEAR-AS2P59090 65 aa9.47□□□□□ -0.89
TSPAN4-201ENST00000346501 TMEM238C9JI98 176 aa9.46□□□□□ -0.9
TSPAN4-201ENST00000346501 CRYGAP11844 174 aa9.46□□□□□ -0.9
TSPAN4-201ENST00000346501 COA6Q5JTJ3 125 aaKnown RBP9.46□□□□□ -0.9
TSPAN4-201ENST00000346501 LINC01545Q5VT33 79 aa9.46□□□□□ -0.9
TSPAN4-201ENST00000346501 NCR3O14931 201 aa9.45□□□□□ -0.9
TSPAN4-201ENST00000346501 AKR1D1P51857 326 aa9.45□□□□□ -0.9
TSPAN4-201ENST00000346501 KRTDAPP60985 99 aa9.45□□□□□ -0.9
TSPAN4-201ENST00000346501 PRYO14603 147 aa9.44□□□□□ -0.9
TSPAN4-201ENST00000346501 PRLHP81277 87 aa9.44□□□□□ -0.9
TSPAN4-201ENST00000346501 Q8NDZ9 215 aa9.44□□□□□ -0.9
TSPAN4-201ENST00000346501 C3orf79P0CE67 100 aa9.43□□□□□ -0.9
TSPAN4-201ENST00000346501 DAND5Q8N907 189 aa9.43□□□□□ -0.9
TSPAN4-201ENST00000346501 KRTAP13-1Q8IUC0 172 aa9.42□□□□□ -0.9
TSPAN4-201ENST00000346501 HIGD2AQ9BW72 106 aa9.42□□□□□ -0.9
TSPAN4-201ENST00000346501 LOC107984156A0A0G2JMH3 177 aa9.41□□□□□ -0.9
TSPAN4-201ENST00000346501 TRBV10-2A0A0K0K1G8 114 aa9.41□□□□□ -0.9
TSPAN4-201ENST00000346501 ETDCA0A1B0GVM5 59 aa9.41□□□□□ -0.9
TSPAN4-201ENST00000346501 S100A7L2Q5SY68 101 aa9.41□□□□□ -0.9
TSPAN4-201ENST00000346501 ARL17AQ8IVW1 177 aa9.41□□□□□ -0.9
TSPAN4-201ENST00000346501 TYMSOSQ8TAI1 123 aa9.41□□□□□ -0.9
TSPAN4-201ENST00000346501 SPANXB1Q9NS25 103 aaPredicted RBP9.41□□□□□ -0.9
TSPAN4-201ENST00000346501 A0A0J9YXY3 114 aa9.4□□□□□ -0.9
TSPAN4-201ENST00000346501 CBY1Q9Y3M2 126 aa9.4□□□□□ -0.9
TSPAN4-201ENST00000346501 HMCN2Q8NDA2 5059 aa9.39□□□□□ -0.91
TSPAN4-201ENST00000346501 ZNF815PA8K554 130 aa9.39□□□□□ -0.91
TSPAN4-201ENST00000346501 NDUFC2O95298 119 aa9.39□□□□□ -0.91
TSPAN4-201ENST00000346501 S100A2P29034 98 aa9.39□□□□□ -0.91
TSPAN4-201ENST00000346501 DDTP30046 118 aa9.39□□□□□ -0.91
TSPAN4-201ENST00000346501 FAM229BQ4G0N7 80 aa9.39□□□□□ -0.91
TSPAN4-201ENST00000346501 KCNQ1DNQ9H478 68 aa9.39□□□□□ -0.91
TSPAN4-201ENST00000346501 ZNF706Q9Y5V0 76 aaPredicted RBP9.39□□□□□ -0.91
TSPAN4-201ENST00000346501 TRBV10-3A0A0K0K1G6 114 aa9.38□□□□□ -0.91
TSPAN4-201ENST00000346501 LINC00337Q8N6G1 96 aa9.38□□□□□ -0.91
TSPAN4-201ENST00000346501 S100A6P06703 90 aa9.37□□□□□ -0.91
TSPAN4-201ENST00000346501 TIMM17BO60830 172 aa9.36□□□□□ -0.91
TSPAN4-201ENST00000346501 NPC2P61916 151 aa9.36□□□□□ -0.91
TSPAN4-201ENST00000346501 SCGB1D4Q6XE38 83 aa9.35□□□□□ -0.91
TSPAN4-201ENST00000346501 COPS9Q8WXC6 57 aa9.35□□□□□ -0.91
TSPAN4-201ENST00000346501 A0A087X002 238 aa9.34□□□□□ -0.91
TSPAN4-201ENST00000346501 SPRR1AP35321 89 aa9.34□□□□□ -0.91
TSPAN4-201ENST00000346501 HINT1P49773 126 aaPredicted RBP9.34□□□□□ -0.91
TSPAN4-201ENST00000346501 ANAPC11Q9NYG5 84 aa9.34□□□□□ -0.91
TSPAN4-201ENST00000346501 TNXBP22105 4242 aa9.33□□□□□ -0.92
TSPAN4-201ENST00000346501 SNRPEP62304 92 aaKnown RBP9.33□□□□□ -0.92
TSPAN4-201ENST00000346501 ADAMTSL4-AS1Q5T5F5 129 aa9.33□□□□□ -0.92
TSPAN4-201ENST00000346501 SPANXCQ9NY87 97 aa9.33□□□□□ -0.92
TSPAN4-201ENST00000346501 UBR4Q5T4S7 5183 aa9.33□□□□□ -0.92
TSPAN4-201ENST00000346501 JOSD1Q15040 202 aaPredicted RBP9.32□□□□□ -0.92
TSPAN4-201ENST00000346501 OR13C6PQ8NH95 151 aa9.31□□□□□ -0.92
TSPAN4-201ENST00000346501 LINC00308Q8TCZ7 52 aa9.31□□□□□ -0.92
TSPAN4-201ENST00000346501 TRAV23DV6A0A075B6W5 121 aa9.3□□□□□ -0.92
TSPAN4-201ENST00000346501 HSBP1L1C9JCN9 74 aa9.3□□□□□ -0.92
TSPAN4-201ENST00000346501 TSPAN13O95857 204 aa9.3□□□□□ -0.92
TSPAN4-201ENST00000346501 IGLV6-57P01721 117 aa9.3□□□□□ -0.92
TSPAN4-201ENST00000346501 LINC00518Q8N0U6 118 aa9.3□□□□□ -0.92
TSPAN4-201ENST00000346501 ATOH7Q8N100 152 aa9.3□□□□□ -0.92
TSPAN4-201ENST00000346501 SMCR5Q8TEV8 140 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms