RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 PRR9Q5T870 116 aa12.5□□□□□ -0.41
SMAD4-201ENST00000342988 TYMSOSQ8TAI1 123 aa12.5□□□□□ -0.41
SMAD4-201ENST00000342988 NCOR2Q9Y618 2525 aa12.5□□□□□ -0.41
SMAD4-201ENST00000342988 ELOF1P60002 83 aaKnown RBP12.49□□□□□ -0.41
SMAD4-201ENST00000342988 Q8NBF4 154 aa12.48□□□□□ -0.41
SMAD4-201ENST00000342988 C22orf24Q9Y442 160 aa12.48□□□□□ -0.41
SMAD4-201ENST00000342988 IGLV4-60A0A075B6I1 120 aa12.48□□□□□ -0.41
SMAD4-201ENST00000342988 SPATA3Q8NHX4 192 aa12.48□□□□□ -0.41
SMAD4-201ENST00000342988 CHD8Q9HCK8 2581 aa12.48□□□□□ -0.41
SMAD4-201ENST00000342988 CSNK1G2-AS1Q8NCQ2 148 aa12.47□□□□□ -0.41
SMAD4-201ENST00000342988 A8MTW9 85 aa12.46□□□□□ -0.41
SMAD4-201ENST00000342988 COX6B2Q6YFQ2 88 aa12.45□□□□□ -0.42
SMAD4-201ENST00000342988 CDC42SE1Q9NRR8 79 aa12.45□□□□□ -0.42
SMAD4-201ENST00000342988 Q96NJ1 140 aa12.44□□□□□ -0.42
SMAD4-201ENST00000342988 LOC110117498A0A087WWA1 95 aa12.44□□□□□ -0.42
SMAD4-201ENST00000342988 KTN1-AS1Q86SY8 53 aa12.43□□□□□ -0.42
SMAD4-201ENST00000342988 LYPD5Q6UWN5 251 aa12.43□□□□□ -0.42
SMAD4-201ENST00000342988 LINC00483Q53H64 154 aa12.42□□□□□ -0.42
SMAD4-201ENST00000342988 C9orf129Q5T035 196 aaKnown RBP12.41□□□□□ -0.42
SMAD4-201ENST00000342988 TSPEAR-AS2P59090 65 aa12.41□□□□□ -0.42
SMAD4-201ENST00000342988 KIF25-AS1Q9Y6Z4 181 aa12.4□□□□□ -0.42
SMAD4-201ENST00000342988 COA5Q86WW8 74 aa12.4□□□□□ -0.43
SMAD4-201ENST00000342988 Q6ZRU5 148 aa12.39□□□□□ -0.43
SMAD4-201ENST00000342988 Q8NA96 180 aa12.39□□□□□ -0.43
SMAD4-201ENST00000342988 C18orf65Q6ZTR6 163 aa12.39□□□□□ -0.43
SMAD4-201ENST00000342988 C10orf99Q6UWK7 81 aa12.39□□□□□ -0.43
SMAD4-201ENST00000342988 IGLV1-51P01701 117 aa12.39□□□□□ -0.43
SMAD4-201ENST00000342988 Q6ZRP5 223 aa12.38□□□□□ -0.43
SMAD4-201ENST00000342988 C11orf21Q9P2W6 132 aa12.38□□□□□ -0.43
SMAD4-201ENST00000342988 FASNP49327 2511 aaKnown RBP12.38□□□□□ -0.43
SMAD4-201ENST00000342988 Q6ZQT0 140 aa12.36□□□□□ -0.43
SMAD4-201ENST00000342988 MUC22E2RYF6 1773 aaPredicted RBP12.36□□□□□ -0.43
SMAD4-201ENST00000342988 LCA10Q71F78 164 aa12.36□□□□□ -0.43
SMAD4-201ENST00000342988 A8MWP4 228 aa12.35□□□□□ -0.43
SMAD4-201ENST00000342988 ZNF295-AS1Q8N0V1 137 aa12.35□□□□□ -0.43
SMAD4-201ENST00000342988 CDIP1Q9H305 208 aa12.35□□□□□ -0.43
SMAD4-201ENST00000342988 FAM19A4Q96LR4 140 aa12.35□□□□□ -0.43
SMAD4-201ENST00000342988 BRWD1-AS2P59051 145 aa12.35□□□□□ -0.43
SMAD4-201ENST00000342988 LINC00476Q8WZB0 136 aa12.34□□□□□ -0.43
SMAD4-201ENST00000342988 GAS8-AS1O95177 125 aa12.34□□□□□ -0.43
SMAD4-201ENST00000342988 EPG5Q9HCE0 2579 aa12.34□□□□□ -0.43
SMAD4-201ENST00000342988 IGF2RP11717 2491 aa12.33□□□□□ -0.44
SMAD4-201ENST00000342988 BRI3O95415 125 aa12.32□□□□□ -0.44
SMAD4-201ENST00000342988 C19orf84I3L1E1 186 aa12.32□□□□□ -0.44
SMAD4-201ENST00000342988 TRBV7-4A0A0J9YYF1 115 aa12.32□□□□□ -0.44
SMAD4-201ENST00000342988 Q6ZRX8 168 aa12.32□□□□□ -0.44
SMAD4-201ENST00000342988 ANKRD11Q6UB99 2663 aaPredicted RBP12.31□□□□□ -0.44
SMAD4-201ENST00000342988 PRO3102Q9H379 93 aa12.31□□□□□ -0.44
SMAD4-201ENST00000342988 ODF3L2Q3SX64 289 aa12.29□□□□□ -0.44
SMAD4-201ENST00000342988 TM2D3Q9BRN9 247 aa12.29□□□□□ -0.44
SMAD4-201ENST00000342988 LINC00167Q96N53 147 aa12.28□□□□□ -0.44
SMAD4-201ENST00000342988 J3QL48 77 aa12.28□□□□□ -0.44
SMAD4-201ENST00000342988 RBM12B-AS1Q9P1G2 102 aa12.28□□□□□ -0.44
SMAD4-201ENST00000342988 C8orf17Q9NRJ1 99 aa12.27□□□□□ -0.44
SMAD4-201ENST00000342988 C16orf90A8MZG2 172 aa12.27□□□□□ -0.45
SMAD4-201ENST00000342988 C1orf229Q6ZS94 237 aaPredicted RBP12.26□□□□□ -0.45
SMAD4-201ENST00000342988 COX8CQ7Z4L0 72 aa12.25□□□□□ -0.45
SMAD4-201ENST00000342988 MRPL34Q9BQ48 92 aaKnown RBP12.25□□□□□ -0.45
SMAD4-201ENST00000342988 PRRC2CQ9Y520 2896 aaKnown RBP12.25□□□□□ -0.45
SMAD4-201ENST00000342988 PLA2G5P39877 138 aa12.25□□□□□ -0.45
SMAD4-201ENST00000342988 C16orf95Q9H693 158 aa12.25□□□□□ -0.45
SMAD4-201ENST00000342988 FHL3Q13643 280 aa12.23□□□□□ -0.45
SMAD4-201ENST00000342988 PRR15Q8IV56 129 aa12.23□□□□□ -0.45
SMAD4-201ENST00000342988 ZNF580Q9UK33 172 aa12.22□□□□□ -0.45
SMAD4-201ENST00000342988 IGLV5-39A0A0G2JS06 123 aa12.21□□□□□ -0.45
SMAD4-201ENST00000342988 A0A0A0MQY5 61 aa12.21□□□□□ -0.45
SMAD4-201ENST00000342988 USP9YO00507 2555 aaPredicted RBP12.21□□□□□ -0.46
SMAD4-201ENST00000342988 COL4A3Q01955 1670 aa12.19□□□□□ -0.46
SMAD4-201ENST00000342988 A8MUN3 132 aa12.18□□□□□ -0.46
SMAD4-201ENST00000342988 H3BNG1 76 aa12.18□□□□□ -0.46
SMAD4-201ENST00000342988 LINC01546A6NGU7 62 aa12.18□□□□□ -0.46
SMAD4-201ENST00000342988 CHTF8P0CG12 524 aa12.18□□□□□ -0.46
SMAD4-201ENST00000342988 ST20-AS1Q8NBB2 130 aa12.17□□□□□ -0.46
SMAD4-201ENST00000342988 IGLV6-57P01721 117 aa12.16□□□□□ -0.46
SMAD4-201ENST00000342988 RTL8CO15255 209 aa12.16□□□□□ -0.46
SMAD4-201ENST00000342988 Q6ZPA2 131 aa12.15□□□□□ -0.46
SMAD4-201ENST00000342988 RPL37AP61513 92 aaKnown RBP12.15□□□□□ -0.47
SMAD4-201ENST00000342988 IGHV3OR16-9A0A0B4J2B5 98 aa12.13□□□□□ -0.47
SMAD4-201ENST00000342988 Q6ZSN1 163 aa12.13□□□□□ -0.47
SMAD4-201ENST00000342988 Q1T7F1 81 aa12.12□□□□□ -0.47
SMAD4-201ENST00000342988 PHF5AQ7RTV0 110 aaKnown RBP12.1□□□□□ -0.47
SMAD4-201ENST00000342988 URB1-AS1Q96HZ7 61 aa12.09□□□□□ -0.47
SMAD4-201ENST00000342988 K7EQZ3 153 aa12.08□□□□□ -0.47
SMAD4-201ENST00000342988 IGLV5-37A0A075B6J1 123 aa12.07□□□□□ -0.48
SMAD4-201ENST00000342988 LINC00310P59036 64 aa12.07□□□□□ -0.48
SMAD4-201ENST00000342988 IGLV5-45A0A087WSX0 123 aa12.06□□□□□ -0.48
SMAD4-201ENST00000342988 LINC00304Q8N9R0 145 aa12.06□□□□□ -0.48
SMAD4-201ENST00000342988 GVQW2A0A096LPI5 108 aaPredicted RBP12.05□□□□□ -0.48
SMAD4-201ENST00000342988 KLKP1Q107X0 134 aa12.05□□□□□ -0.48
SMAD4-201ENST00000342988 A0A0D9SG42 100 aa12.05□□□□□ -0.48
SMAD4-201ENST00000342988 A0A1W2PNU3 283 aaPredicted RBP12.04□□□□□ -0.48
SMAD4-201ENST00000342988 SPANXA2-OT1Q8N9U9 137 aa12.03□□□□□ -0.48
SMAD4-201ENST00000342988 OBSCN-AS1Q96MR7 158 aa12.03□□□□□ -0.48
SMAD4-201ENST00000342988 A0A1B0GVX0 72 aa12.02□□□□□ -0.49
SMAD4-201ENST00000342988 FAM218AQ96MZ4 157 aa12.01□□□□□ -0.49
SMAD4-201ENST00000342988 FAM104AQ969W3 186 aa12□□□□□ -0.49
SMAD4-201ENST00000342988 A0A096LNJ9 63 aa11.99□□□□□ -0.49
SMAD4-201ENST00000342988 NBDYA0A0U1RRE5 68 aa11.98□□□□□ -0.49
SMAD4-201ENST00000342988 CRIP3Q6Q6R5 217 aa11.98□□□□□ -0.49
SMAD4-201ENST00000342988 LINC00315P59091 139 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms