RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 MRPL55Q7Z7F7 128 aaKnown RBP9.36□□□□□ -0.91
VAPA-201ENST00000340541 SND1-IT1Q9HBX3 110 aa9.36□□□□□ -0.91
VAPA-201ENST00000340541 LINC00167Q96N53 147 aa9.34□□□□□ -0.91
VAPA-201ENST00000340541 PLNP26678 52 aa9.33□□□□□ -0.92
VAPA-201ENST00000340541 Q8NDZ9 215 aa9.33□□□□□ -0.92
VAPA-201ENST00000340541 PMCHL2Q9BQD1 86 aa9.33□□□□□ -0.92
VAPA-201ENST00000340541 ATP6V1G1O75348 118 aa9.32□□□□□ -0.92
VAPA-201ENST00000340541 DPM2O94777 84 aa9.32□□□□□ -0.92
VAPA-201ENST00000340541 VPREB1P12018 145 aa9.32□□□□□ -0.92
VAPA-201ENST00000340541 TSPEAR-AS2P59090 65 aa9.32□□□□□ -0.92
VAPA-201ENST00000340541 GAGE10A6NGK3 116 aa9.31□□□□□ -0.92
VAPA-201ENST00000340541 RPL37AP8A6NKH3 93 aa9.31□□□□□ -0.92
VAPA-201ENST00000340541 H0Y9J4 135 aa9.31□□□□□ -0.92
VAPA-201ENST00000340541 DIRC1Q969H9 104 aa9.31□□□□□ -0.92
VAPA-201ENST00000340541 MAP1LC3CQ9BXW4 147 aa9.31□□□□□ -0.92
VAPA-201ENST00000340541 IGKCP01834 107 aa9.3□□□□□ -0.92
VAPA-201ENST00000340541 LINC00158P58513 81 aa9.3□□□□□ -0.92
VAPA-201ENST00000340541 COA6Q5JTJ3 125 aaKnown RBP9.3□□□□□ -0.92
VAPA-201ENST00000340541 NDUFA12Q9UI09 145 aa9.3□□□□□ -0.92
VAPA-201ENST00000340541 A0A0U1RRA0 63 aa9.29□□□□□ -0.92
VAPA-201ENST00000340541 LEPROTO15243 131 aa9.29□□□□□ -0.92
VAPA-201ENST00000340541 SMIM13P0DJ93 91 aa9.29□□□□□ -0.92
VAPA-201ENST00000340541 NKAPP1Q8N9T2 125 aa9.29□□□□□ -0.92
VAPA-201ENST00000340541 SYS1-DBNDD2H3BUS1 97 aa9.28□□□□□ -0.92
VAPA-201ENST00000340541 ZNF861PO60384 105 aa9.28□□□□□ -0.92
VAPA-201ENST00000340541 HERV-K104P63124 156 aa9.28□□□□□ -0.92
VAPA-201ENST00000340541 BCE1O60756 84 aa9.27□□□□□ -0.93
VAPA-201ENST00000340541 KRTAP1-4P0C5Y4 121 aa9.27□□□□□ -0.93
VAPA-201ENST00000340541 PLEKHB2Q96CS7 222 aa9.27□□□□□ -0.93
VAPA-201ENST00000340541 MYMXA0A1B0GTQ4 84 aa9.26□□□□□ -0.93
VAPA-201ENST00000340541 J3QQQ9 107 aa9.26□□□□□ -0.93
VAPA-201ENST00000340541 RPL24P83731 157 aaKnown RBP9.26□□□□□ -0.93
VAPA-201ENST00000340541 LRP2P98164 4655 aa9.26□□□□□ -0.93
VAPA-201ENST00000340541 IGLV1-50A0A075B6I6 118 aa9.25□□□□□ -0.93
VAPA-201ENST00000340541 HERVK_113P61574 105 aa9.25□□□□□ -0.93
VAPA-201ENST00000340541 MEIG1Q5JSS6 88 aa9.25□□□□□ -0.93
VAPA-201ENST00000340541 LINC01545Q5VT33 79 aa9.25□□□□□ -0.93
VAPA-201ENST00000340541 MIR7-3HGQ8N6C7 128 aa9.25□□□□□ -0.93
VAPA-201ENST00000340541 IGKV2-28A0A075B6P5 120 aa9.24□□□□□ -0.93
VAPA-201ENST00000340541 IGKV2D-28P01615 120 aa9.24□□□□□ -0.93
VAPA-201ENST00000340541 C4orf48Q5BLP8 95 aa9.24□□□□□ -0.93
VAPA-201ENST00000340541 KRTAP13-1Q8IUC0 172 aa9.24□□□□□ -0.93
VAPA-201ENST00000340541 PET117Q6UWS5 81 aa9.23□□□□□ -0.93
VAPA-201ENST00000340541 PRR26Q8N8Z3 221 aa9.23□□□□□ -0.93
VAPA-201ENST00000340541 LINC00587B1AMM8 73 aa9.22□□□□□ -0.93
VAPA-201ENST00000340541 E9PLD3 99 aa9.22□□□□□ -0.93
VAPA-201ENST00000340541 C3orf79P0CE67 100 aa9.22□□□□□ -0.93
VAPA-201ENST00000340541 NMUP48645 174 aa9.22□□□□□ -0.93
VAPA-201ENST00000340541 TMEM238C9JI98 176 aa9.21□□□□□ -0.94
VAPA-201ENST00000340541 LGALS3P17931 250 aaKnown RBP9.21□□□□□ -0.94
VAPA-201ENST00000340541 RPL28P46779 137 aaKnown RBP9.21□□□□□ -0.94
VAPA-201ENST00000340541 M0R378 163 aa9.2□□□□□ -0.94
VAPA-201ENST00000340541 BOD1L2Q8IYS8 172 aa9.2□□□□□ -0.94
VAPA-201ENST00000340541 DAND5Q8N907 189 aa9.2□□□□□ -0.94
VAPA-201ENST00000340541 TMEM126AQ9H061 195 aa9.2□□□□□ -0.94
VAPA-201ENST00000340541 LOC107984156A0A0G2JMH3 177 aa9.19□□□□□ -0.94
VAPA-201ENST00000340541 ARL17AQ8IVW1 177 aa9.19□□□□□ -0.94
VAPA-201ENST00000340541 RNF213Q63HN8 5207 aa9.18□□□□□ -0.94
VAPA-201ENST00000340541 A0A0J9YXY3 114 aa9.17□□□□□ -0.94
VAPA-201ENST00000340541 KRTDAPP60985 99 aa9.17□□□□□ -0.94
VAPA-201ENST00000340541 PRLHP81277 87 aa9.17□□□□□ -0.94
VAPA-201ENST00000340541 IGKV2D-26A0A0A0MRZ7 120 aa9.16□□□□□ -0.94
VAPA-201ENST00000340541 NCR3O14931 201 aa9.16□□□□□ -0.94
VAPA-201ENST00000340541 UBE2AP49459 152 aa9.16□□□□□ -0.94
VAPA-201ENST00000340541 ADAMTSL4-AS1Q5T5F5 129 aa9.15□□□□□ -0.94
VAPA-201ENST00000340541 EIF4EBP3O60516 100 aaPredicted RBP9.14□□□□□ -0.95
VAPA-201ENST00000340541 SOSTDC1Q6X4U4 206 aa9.14□□□□□ -0.95
VAPA-201ENST00000340541 FAM19A1Q7Z5A9 133 aa9.14□□□□□ -0.95
VAPA-201ENST00000340541 A0A087X002 238 aa9.13□□□□□ -0.95
VAPA-201ENST00000340541 LITAFQ99732 161 aa9.13□□□□□ -0.95
VAPA-201ENST00000340541 TRBV10-3A0A0K0K1G6 114 aa9.12□□□□□ -0.95
VAPA-201ENST00000340541 LORP23490 312 aaPredicted RBP9.12□□□□□ -0.95
VAPA-201ENST00000340541 SPRR1AP35321 89 aa9.12□□□□□ -0.95
VAPA-201ENST00000340541 RPL13AP40429 203 aaKnown RBP9.12□□□□□ -0.95
VAPA-201ENST00000340541 HIST3H2BBQ8N257 126 aa9.12□□□□□ -0.95
VAPA-201ENST00000340541 TTTY13Q9BZ97 58 aa9.12□□□□□ -0.95
VAPA-201ENST00000340541 KCNQ1DNQ9H478 68 aa9.12□□□□□ -0.95
VAPA-201ENST00000340541 PRYO14603 147 aa9.11□□□□□ -0.95
VAPA-201ENST00000340541 ANAPC11Q9NYG5 84 aa9.11□□□□□ -0.95
VAPA-201ENST00000340541 TRBV10-2A0A0K0K1G8 114 aa9.1□□□□□ -0.95
VAPA-201ENST00000340541 C20orf202A1L168 122 aa9.1□□□□□ -0.95
VAPA-201ENST00000340541 KRTAP4-16G5E9R7 235 aaPredicted RBP9.1□□□□□ -0.95
VAPA-201ENST00000340541 NDUFC2O95298 119 aa9.1□□□□□ -0.95
VAPA-201ENST00000340541 HIST1H2BLQ99880 126 aa9.1□□□□□ -0.95
VAPA-201ENST00000340541 ZNF815PA8K554 130 aa9.09□□□□□ -0.95
VAPA-201ENST00000340541 TIMM17BO60830 172 aa9.09□□□□□ -0.95
VAPA-201ENST00000340541 NPC2P61916 151 aa9.09□□□□□ -0.95
VAPA-201ENST00000340541 ANKRD39Q53RE8 183 aa9.09□□□□□ -0.95
VAPA-201ENST00000340541 ATOH7Q8N100 152 aa9.09□□□□□ -0.95
VAPA-201ENST00000340541 LINC00337Q8N6G1 96 aa9.09□□□□□ -0.95
VAPA-201ENST00000340541 MIEN1Q9BRT3 115 aa9.09□□□□□ -0.95
VAPA-201ENST00000340541 SPANXB1Q9NS25 103 aaPredicted RBP9.09□□□□□ -0.95
VAPA-201ENST00000340541 CRYGAP11844 174 aa9.07□□□□□ -0.96
VAPA-201ENST00000340541 IGLV6-57P01721 117 aa9.06□□□□□ -0.96
VAPA-201ENST00000340541 DDTP30046 118 aa9.06□□□□□ -0.96
VAPA-201ENST00000340541 FAM229BQ4G0N7 80 aa9.06□□□□□ -0.96
VAPA-201ENST00000340541 KRTAP13-2Q52LG2 175 aa9.06□□□□□ -0.96
VAPA-201ENST00000340541 LINC00308Q8TCZ7 52 aa9.06□□□□□ -0.96
VAPA-201ENST00000340541 HIGD2AQ9BW72 106 aa9.06□□□□□ -0.96
VAPA-201ENST00000340541 S100A2P29034 98 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms