RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 A0A0C4DFX4 3053 aa9.55□□□□□ -0.88
RTN4-202ENST00000337526 Q9BRP9 147 aa9.55□□□□□ -0.88
RTN4-202ENST00000337526 C5orf42Q9H799 3197 aa9.54□□□□□ -0.88
RTN4-202ENST00000337526 ESRGQ1W209 222 aa9.54□□□□□ -0.88
RTN4-202ENST00000337526 DEFB116Q30KQ4 102 aa9.54□□□□□ -0.88
RTN4-202ENST00000337526 LY6G6CO95867 125 aa9.53□□□□□ -0.88
RTN4-202ENST00000337526 CXCL6P80162 114 aa9.53□□□□□ -0.88
RTN4-202ENST00000337526 C1orf195Q5TG92 126 aa9.53□□□□□ -0.88
RTN4-202ENST00000337526 FHL3Q13643 280 aa9.53□□□□□ -0.88
RTN4-202ENST00000337526 KLK9Q2XQG4 91 aa9.52□□□□□ -0.88
RTN4-202ENST00000337526 LAMA3Q16787 3333 aa9.52□□□□□ -0.89
RTN4-202ENST00000337526 SPATA3Q8NHX4 192 aa9.52□□□□□ -0.89
RTN4-202ENST00000337526 LAMA2P24043 3122 aaKnown RBP9.52□□□□□ -0.89
RTN4-202ENST00000337526 MGAM2Q2M2H8 2515 aa9.51□□□□□ -0.89
RTN4-202ENST00000337526 K7ERS5 55 aa9.51□□□□□ -0.89
RTN4-202ENST00000337526 COL27A1Q8IZC6 1860 aaPredicted RBP9.5□□□□□ -0.89
RTN4-202ENST00000337526 PRLHP81277 87 aa9.5□□□□□ -0.89
RTN4-202ENST00000337526 IGHV6-1A0A0B4J1U7 121 aa9.49□□□□□ -0.89
RTN4-202ENST00000337526 CRYGAP11844 174 aa9.49□□□□□ -0.89
RTN4-202ENST00000337526 C22orf24Q9Y442 160 aa9.49□□□□□ -0.89
RTN4-202ENST00000337526 KIAA0087Q14695 138 aa9.48□□□□□ -0.89
RTN4-202ENST00000337526 C6orf48Q9UBA6 75 aa9.48□□□□□ -0.89
RTN4-202ENST00000337526 CIRBP-AS1Q8TBR5 109 aa9.48□□□□□ -0.89
RTN4-202ENST00000337526 LITAFQ99732 161 aa9.48□□□□□ -0.89
RTN4-202ENST00000337526 NUPR2A6NF83 97 aa9.47□□□□□ -0.89
RTN4-202ENST00000337526 PCOTHQ58A44 107 aa9.47□□□□□ -0.89
RTN4-202ENST00000337526 HCG22E2RYF7 251 aa9.47□□□□□ -0.89
RTN4-202ENST00000337526 PSPHP1O15172 72 aa9.47□□□□□ -0.89
RTN4-202ENST00000337526 X6R8D5 127 aa9.47□□□□□ -0.89
RTN4-202ENST00000337526 H0Y9P7 68 aa9.46□□□□□ -0.89
RTN4-202ENST00000337526 TRBV7-6A0A0J9YX20 115 aa9.46□□□□□ -0.9
RTN4-202ENST00000337526 PMAIP1Q13794 54 aa9.46□□□□□ -0.9
RTN4-202ENST00000337526 LINC01556Q5JQF7 62 aa9.46□□□□□ -0.9
RTN4-202ENST00000337526 PCSK5Q92824 1860 aa9.46□□□□□ -0.9
RTN4-202ENST00000337526 ATRQ13535 2644 aa9.45□□□□□ -0.9
RTN4-202ENST00000337526 SMCR5Q8TEV8 140 aa9.45□□□□□ -0.9
RTN4-202ENST00000337526 CENPEQ02224 2701 aa9.44□□□□□ -0.9
RTN4-202ENST00000337526 LINC00167Q96N53 147 aa9.43□□□□□ -0.9
RTN4-202ENST00000337526 TRANK1O15050 2925 aa9.43□□□□□ -0.9
RTN4-202ENST00000337526 ZNF292O60281 2723 aa9.42□□□□□ -0.9
RTN4-202ENST00000337526 SMIM29Q86T20 159 aa9.41□□□□□ -0.9
RTN4-202ENST00000337526 BCE1O60756 84 aa9.41□□□□□ -0.9
RTN4-202ENST00000337526 Q6ZQT0 140 aa9.41□□□□□ -0.9
RTN4-202ENST00000337526 HELZ2Q9BYK8 2649 aaKnown RBP9.41□□□□□ -0.9
RTN4-202ENST00000337526 hDV103S1A0JD37 113 aa9.4□□□□□ -0.9
RTN4-202ENST00000337526 ELOF1P60002 83 aaKnown RBP9.4□□□□□ -0.9
RTN4-202ENST00000337526 IGLV5-52A0A0A0MRZ9 124 aa9.4□□□□□ -0.9
RTN4-202ENST00000337526 MAST4O15021 2626 aa9.4□□□□□ -0.91
RTN4-202ENST00000337526 EIF4EBP3O60516 100 aaPredicted RBP9.38□□□□□ -0.91
RTN4-202ENST00000337526 FSHBP01225 129 aa9.37□□□□□ -0.91
RTN4-202ENST00000337526 C1orf64Q8NEQ6 169 aa9.37□□□□□ -0.91
RTN4-202ENST00000337526 RPS28P62857 69 aaKnown RBP9.37□□□□□ -0.91
RTN4-202ENST00000337526 LOC110117498A0A087WWA1 95 aa9.37□□□□□ -0.91
RTN4-202ENST00000337526 H3BNG1 76 aa9.37□□□□□ -0.91
RTN4-202ENST00000337526 A0A1B0GW54 56 aa9.35□□□□□ -0.91
RTN4-202ENST00000337526 Q8NBF4 154 aa9.34□□□□□ -0.91
RTN4-202ENST00000337526 CFAP54Q96N23 3096 aa9.34□□□□□ -0.91
RTN4-202ENST00000337526 Q8NAQ8 132 aa9.34□□□□□ -0.91
RTN4-202ENST00000337526 RETNLBQ9BQ08 111 aa9.34□□□□□ -0.91
RTN4-202ENST00000337526 PRUNE2Q8WUY3 3088 aa9.33□□□□□ -0.92
RTN4-202ENST00000337526 Q6ZRX8 168 aa9.33□□□□□ -0.92
RTN4-202ENST00000337526 TM2D3Q9BRN9 247 aa9.32□□□□□ -0.92
RTN4-202ENST00000337526 UNC80Q8N2C7 3258 aa9.31□□□□□ -0.92
RTN4-202ENST00000337526 C1orf134Q5TEV5 83 aa9.31□□□□□ -0.92
RTN4-202ENST00000337526 PRO0628Q9UI54 55 aa9.31□□□□□ -0.92
RTN4-202ENST00000337526 GVQW2A0A096LPI5 108 aaPredicted RBP9.29□□□□□ -0.92
RTN4-202ENST00000337526 C4orf26Q17RF5 130 aa9.29□□□□□ -0.92
RTN4-202ENST00000337526 LINC00476Q8WZB0 136 aa9.29□□□□□ -0.92
RTN4-202ENST00000337526 AKAP13Q12802 2813 aa9.29□□□□□ -0.92
RTN4-202ENST00000337526 SPINK1P00995 79 aa9.28□□□□□ -0.92
RTN4-202ENST00000337526 IGLV6-57P01721 117 aa9.28□□□□□ -0.92
RTN4-202ENST00000337526 FLNAP21333 2647 aaKnown RBP9.28□□□□□ -0.92
RTN4-202ENST00000337526 ST20-AS1Q8NBB2 130 aa9.28□□□□□ -0.92
RTN4-202ENST00000337526 VPREB1P12018 145 aa9.28□□□□□ -0.92
RTN4-202ENST00000337526 Q6ZRP5 223 aa9.27□□□□□ -0.93
RTN4-202ENST00000337526 CSNK1G2-AS1Q8NCQ2 148 aa9.27□□□□□ -0.93
RTN4-202ENST00000337526 LIMD2Q9BT23 127 aa9.27□□□□□ -0.93
RTN4-202ENST00000337526 MDFIQ99750 246 aa9.25□□□□□ -0.93
RTN4-202ENST00000337526 TP53AIP1Q9HCN2 124 aa9.25□□□□□ -0.93
RTN4-202ENST00000337526 MOBPQ13875 183 aa9.24□□□□□ -0.93
RTN4-202ENST00000337526 CFAP46Q8IYW2 2715 aa9.24□□□□□ -0.93
RTN4-202ENST00000337526 PHF5AQ7RTV0 110 aaKnown RBP9.23□□□□□ -0.93
RTN4-202ENST00000337526 LINC00588Q9Y4M8 146 aa9.23□□□□□ -0.93
RTN4-202ENST00000337526 ITPR3Q14573 2671 aa9.23□□□□□ -0.93
RTN4-202ENST00000337526 NHLRC4P0CG21 123 aaPredicted RBP9.23□□□□□ -0.93
RTN4-202ENST00000337526 IGKV2D-30A0A075B6S6 120 aa9.21□□□□□ -0.93
RTN4-202ENST00000337526 EPM2AB3EWF7 344 aa9.21□□□□□ -0.93
RTN4-202ENST00000337526 IGKV2-30P06310 120 aa9.21□□□□□ -0.93
RTN4-202ENST00000337526 C16orf90A8MZG2 172 aa9.2□□□□□ -0.94
RTN4-202ENST00000337526 GIG44P09565 113 aaPredicted RBP9.2□□□□□ -0.94
RTN4-202ENST00000337526 KRTAP24-1Q3LI83 254 aa9.2□□□□□ -0.94
RTN4-202ENST00000337526 TRAV22A0A0B4J277 110 aa9.19□□□□□ -0.94
RTN4-202ENST00000337526 TRBV7-4A0A0J9YYF1 115 aa9.19□□□□□ -0.94
RTN4-202ENST00000337526 H3BPC8 53 aa9.19□□□□□ -0.94
RTN4-202ENST00000337526 LINC00528Q8N1L1 170 aa9.19□□□□□ -0.94
RTN4-202ENST00000337526 CDH23Q9H251 3354 aa9.18□□□□□ -0.94
RTN4-202ENST00000337526 DNAH10OSP0CZ25 163 aa9.18□□□□□ -0.94
RTN4-202ENST00000337526 RPL37AP61513 92 aaKnown RBP9.18□□□□□ -0.94
RTN4-202ENST00000337526 C19orf73Q9NVV2 129 aa9.17□□□□□ -0.94
RTN4-202ENST00000337526 A0A096LNT2 108 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms