RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 LINC00846Q9NV44 126 aa7.1□□□□□ -1.27
CHD3-201ENST00000330494 KIF25-AS1Q9Y6Z4 181 aa7.1□□□□□ -1.27
CHD3-201ENST00000330494 LINC01547P58512 204 aaPredicted RBP7.09□□□□□ -1.27
CHD3-201ENST00000330494 MDFIQ99750 246 aa7.09□□□□□ -1.27
CHD3-201ENST00000330494 Q6ZVQ6 151 aa7.09□□□□□ -1.27
CHD3-201ENST00000330494 VPREB1P12018 145 aa7.09□□□□□ -1.27
CHD3-201ENST00000330494 PRUNE2Q8WUY3 3088 aa7.09□□□□□ -1.27
CHD3-201ENST00000330494 LAMA2P24043 3122 aaKnown RBP7.09□□□□□ -1.27
CHD3-201ENST00000330494 LINC00575Q6W349 94 aa7.09□□□□□ -1.28
CHD3-201ENST00000330494 MTORP42345 2549 aa7.08□□□□□ -1.28
CHD3-201ENST00000330494 HTTP42858 3142 aa7.08□□□□□ -1.28
CHD3-201ENST00000330494 PKD1L2Q7Z442 2459 aa7.08□□□□□ -1.28
CHD3-201ENST00000330494 LINC00337Q8N6G1 96 aa7.07□□□□□ -1.28
CHD3-201ENST00000330494 SPINK1P00995 79 aa7.07□□□□□ -1.28
CHD3-201ENST00000330494 C22orf24Q9Y442 160 aa7.07□□□□□ -1.28
CHD3-201ENST00000330494 A0A087WSZ3 146 aa7.07□□□□□ -1.28
CHD3-201ENST00000330494 H0Y9P7 68 aa7.07□□□□□ -1.28
CHD3-201ENST00000330494 RANBP2P49792 3224 aaKnown RBP7.06□□□□□ -1.28
CHD3-201ENST00000330494 FAM19A4Q96LR4 140 aa7.06□□□□□ -1.28
CHD3-201ENST00000330494 MUC7Q8TAX7 377 aa7.05□□□□□ -1.28
CHD3-201ENST00000330494 LINC00315P59091 139 aa7.04□□□□□ -1.28
CHD3-201ENST00000330494 C2orf48Q96LS8 159 aa7.04□□□□□ -1.28
CHD3-201ENST00000330494 FASNP49327 2511 aaKnown RBP7.04□□□□□ -1.28
CHD3-201ENST00000330494 CFAP54Q96N23 3096 aa7.04□□□□□ -1.28
CHD3-201ENST00000330494 BPTFQ12830 3046 aa7.04□□□□□ -1.28
CHD3-201ENST00000330494 CHTF8P0CG12 524 aa7.03□□□□□ -1.28
CHD3-201ENST00000330494 SMCR5Q8TEV8 140 aa7.03□□□□□ -1.28
CHD3-201ENST00000330494 RPS28P62857 69 aaKnown RBP7.03□□□□□ -1.28
CHD3-201ENST00000330494 NHLRC4P0CG21 123 aaPredicted RBP7.02□□□□□ -1.29
CHD3-201ENST00000330494 SMCPP49901 116 aaPredicted RBP7.02□□□□□ -1.29
CHD3-201ENST00000330494 LIMD2Q9BT23 127 aa7.02□□□□□ -1.29
CHD3-201ENST00000330494 C6orf48Q9UBA6 75 aa7.02□□□□□ -1.29
CHD3-201ENST00000330494 SPAG11AQ6PDA7 123 aa7.01□□□□□ -1.29
CHD3-201ENST00000330494 KIAA0087Q14695 138 aa7.01□□□□□ -1.29
CHD3-201ENST00000330494 CDH23Q9H251 3354 aa7.01□□□□□ -1.29
CHD3-201ENST00000330494 IGHV3OR16-9A0A0B4J2B5 98 aa7□□□□□ -1.29
CHD3-201ENST00000330494 PHF5AQ7RTV0 110 aaKnown RBP7□□□□□ -1.29
CHD3-201ENST00000330494 UNC80Q8N2C7 3258 aa6.99□□□□□ -1.29
CHD3-201ENST00000330494 SMIM29Q86T20 159 aa6.99□□□□□ -1.29
CHD3-201ENST00000330494 HCG22E2RYF7 251 aa6.99□□□□□ -1.29
CHD3-201ENST00000330494 LINC00167Q96N53 147 aa6.99□□□□□ -1.29
CHD3-201ENST00000330494 hDV103S1A0JD37 113 aa6.98□□□□□ -1.29
CHD3-201ENST00000330494 MOBPQ13875 183 aa6.97□□□□□ -1.29
CHD3-201ENST00000330494 IGLV5-39A0A0G2JS06 123 aa6.97□□□□□ -1.29
CHD3-201ENST00000330494 CXCL6P80162 114 aa6.97□□□□□ -1.29
CHD3-201ENST00000330494 Q8NAQ8 132 aa6.97□□□□□ -1.29
CHD3-201ENST00000330494 SPACA4Q8TDM5 124 aa6.97□□□□□ -1.29
CHD3-201ENST00000330494 LINC01546A6NGU7 62 aa6.96□□□□□ -1.29
CHD3-201ENST00000330494 LINC01561Q8N1V8 128 aa6.96□□□□□ -1.29
CHD3-201ENST00000330494 C1orf64Q8NEQ6 169 aa6.96□□□□□ -1.29
CHD3-201ENST00000330494 LINC00588Q9Y4M8 146 aa6.96□□□□□ -1.3
CHD3-201ENST00000330494 PRO0461Q9UI25 63 aa6.96□□□□□ -1.3
CHD3-201ENST00000330494 FAM218AQ96MZ4 157 aa6.96□□□□□ -1.3
CHD3-201ENST00000330494 CELSR3Q9NYQ7 3312 aa6.95□□□□□ -1.3
CHD3-201ENST00000330494 F8WDY8 70 aa6.95□□□□□ -1.3
CHD3-201ENST00000330494 A0A0C4DFX4 3053 aa6.94□□□□□ -1.3
CHD3-201ENST00000330494 A0A1B0GU69 56 aa6.94□□□□□ -1.3
CHD3-201ENST00000330494 RTL8CO15255 209 aa6.93□□□□□ -1.3
CHD3-201ENST00000330494 FAM168BA1KXE4 195 aa6.93□□□□□ -1.3
CHD3-201ENST00000330494 DNAH14Q0VDD8 3507 aa6.93□□□□□ -1.3
CHD3-201ENST00000330494 KRTAP10-11P60412 298 aa6.93□□□□□ -1.3
CHD3-201ENST00000330494 SPATA3Q8NHX4 192 aa6.92□□□□□ -1.3
CHD3-201ENST00000330494 IGKV2D-30A0A075B6S6 120 aa6.92□□□□□ -1.3
CHD3-201ENST00000330494 IGKV2-30P06310 120 aa6.92□□□□□ -1.3
CHD3-201ENST00000330494 ST20-AS1Q8NBB2 130 aa6.92□□□□□ -1.3
CHD3-201ENST00000330494 SPINT4Q6UDR6 99 aa6.92□□□□□ -1.3
CHD3-201ENST00000330494 SZT2Q5T011 3432 aa6.92□□□□□ -1.3
CHD3-201ENST00000330494 C8orf87E5RJ46 101 aa6.91□□□□□ -1.3
CHD3-201ENST00000330494 KRTAP10-3P60369 221 aa6.91□□□□□ -1.3
CHD3-201ENST00000330494 F8P00451 2351 aa6.91□□□□□ -1.3
CHD3-201ENST00000330494 J3QL48 77 aa6.9□□□□□ -1.3
CHD3-201ENST00000330494 NBDYA0A0U1RRE5 68 aa6.9□□□□□ -1.3
CHD3-201ENST00000330494 TRIOO75962 3097 aa6.9□□□□□ -1.31
CHD3-201ENST00000330494 C16orf90A8MZG2 172 aa6.89□□□□□ -1.31
CHD3-201ENST00000330494 TM2D3Q9BRN9 247 aa6.89□□□□□ -1.31
CHD3-201ENST00000330494 Q6ZRP5 223 aa6.88□□□□□ -1.31
CHD3-201ENST00000330494 RPL37AP61513 92 aaKnown RBP6.88□□□□□ -1.31
CHD3-201ENST00000330494 ATP11AUNQ6ZP68 121 aa6.88□□□□□ -1.31
CHD3-201ENST00000330494 IGLV5-45A0A087WSX0 123 aa6.88□□□□□ -1.31
CHD3-201ENST00000330494 EPM2AB3EWF7 344 aa6.88□□□□□ -1.31
CHD3-201ENST00000330494 IGLV8-61A0A075B6I0 122 aa6.86□□□□□ -1.31
CHD3-201ENST00000330494 H3BNG1 76 aa6.86□□□□□ -1.31
CHD3-201ENST00000330494 CHD9Q3L8U1 2897 aa6.86□□□□□ -1.31
CHD3-201ENST00000330494 C7orf65Q6ZTY9 151 aa6.86□□□□□ -1.31
CHD3-201ENST00000330494 DNAH10OSP0CZ25 163 aa6.86□□□□□ -1.31
CHD3-201ENST00000330494 LINC00476Q8WZB0 136 aa6.86□□□□□ -1.31
CHD3-201ENST00000330494 ELOF1P60002 83 aaKnown RBP6.85□□□□□ -1.31
CHD3-201ENST00000330494 LINC00336Q6ZUF6 198 aa6.85□□□□□ -1.31
CHD3-201ENST00000330494 K7EIL1 84 aa6.85□□□□□ -1.31
CHD3-201ENST00000330494 A8MUN3 132 aa6.85□□□□□ -1.31
CHD3-201ENST00000330494 CSNK1G2-AS1Q8NCQ2 148 aa6.85□□□□□ -1.31
CHD3-201ENST00000330494 BCE1O60756 84 aa6.85□□□□□ -1.31
CHD3-201ENST00000330494 TYMSOSQ8TAI1 123 aa6.84□□□□□ -1.32
CHD3-201ENST00000330494 EPG5Q9HCE0 2579 aa6.83□□□□□ -1.32
CHD3-201ENST00000330494 CD164Q04900 197 aa6.83□□□□□ -1.32
CHD3-201ENST00000330494 Q6ZRX8 168 aa6.83□□□□□ -1.32
CHD3-201ENST00000330494 A0A096LNT2 108 aa6.83□□□□□ -1.32
CHD3-201ENST00000330494 ACYP2P14621 99 aa6.83□□□□□ -1.32
CHD3-201ENST00000330494 WDFY4Q6ZS81 3184 aa6.82□□□□□ -1.32
CHD3-201ENST00000330494 FAM229AH3BQW9 127 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms