RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SCGB3A1Q96QR1 104 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 PROK2Q9HC23 129 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 TAS2R4Q9NYW5 299 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 V9GYV3 84 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 CITO14578 2027 aa1.38□□□□□ -2.19
HMGB1-201ENST00000326004 MUC19Q7Z5P9 8384 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 TRBV25-1A0A075B6N4 114 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 IGHV3-64A0A075B6Q5 118 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 IGHV1-18A0A0C4DH31 117 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 IGKV1-9A0A0C4DH69 117 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 MYMXA0A1B0GTQ4 84 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 SMIM27A0A1W2PRY6 76 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 LINC01549A6NIU2 74 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 ATOX1O00244 68 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 P0DMU3 169 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 FAM231AP0DMU4 169 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 FAM231CP0DMU5 169 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 UBE2L3P68036 154 aaKnown RBP1.37□□□□□ -2.19
HMGB1-201ENST00000326004 CCL8P80075 99 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 SERF2P84101 59 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 RBM3P98179 157 aaKnown RBP1.37□□□□□ -2.19
HMGB1-201ENST00000326004 PRR15Q8IV56 129 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 SERP2Q8N6R1 65 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 WFDC5Q8TCV5 224 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 MGST2Q99735 147 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 NABP2Q9BQ15 211 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 Q9BRP9 147 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 OSTCQ9NRP0 149 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 LINC00474Q9P2X8 69 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 CRCT1Q9UGL9 99 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 MUC2Q02817 5179 aa1.37□□□□□ -2.19
HMGB1-201ENST00000326004 CADP27708 2225 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 DMBT1Q9UGM3 2413 aaPredicted RBP1.36□□□□□ -2.19
HMGB1-201ENST00000326004 TRBV7-3A0A075B6L6 115 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 IGKV2D-26A0A0A0MRZ7 120 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 TRBV7-1A0A0A6YYK4 115 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 TRBV10-2A0A0K0K1G8 114 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 TEX49A0A1B0GTD5 131 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 UBE2L5PA0A1B0GUS4 154 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 C10orf142B7Z368 130 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 HMGN4O00479 90 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 TIMM17BO60830 172 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 PIRTP0C851 137 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 CR1P17927 2039 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 SPINT3P49223 89 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 UBE2D3P61077 147 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 PCBD1P61457 104 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 UBE2D2P62837 147 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 QRFPP83859 136 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 FREM1Q5H8C1 2179 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 S100A7L2Q5SY68 101 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 TMEM170BQ5T4T1 132 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 C1orf140Q5VVS0 124 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 FAM223AQ8IWN6 122 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 DEFB106AQ8N104 65 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 MYOZ3Q8TDC0 251 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 TRGV9Q99603 122 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 LY96Q9Y6Y9 160 aa1.36□□□□□ -2.19
HMGB1-201ENST00000326004 IGHV1-58A0A0C4DH39 117 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 TRBV7-6A0A0J9YX20 115 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 A0A1B0GWA3 101 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 FAM223BA6NKX1 122 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 IQCF6A8MYZ5 107 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 K7EIL1 84 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 M0R378 163 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 LY6G6CO95867 125 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 CLPSP04118 112 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 IAPPP10997 89 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 RNASE4P34096 147 aaKnown RBP1.35□□□□□ -2.19
HMGB1-201ENST00000326004 IFI27P40305 119 aaPredicted RBP1.35□□□□□ -2.19
HMGB1-201ENST00000326004 ZNF137PP52743 207 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 FXYD4P59646 89 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 MRPS36P82909 103 aaKnown RBP1.35□□□□□ -2.19
HMGB1-201ENST00000326004 PSMG4Q5JS54 123 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 C2orf82Q6UX34 121 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 C5orf38Q86SI9 138 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 LINC00643Q86TS7 51 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 CCL4L1Q8NHW4 92 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 PATE1Q8WXA2 126 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 COPS9Q8WXC6 57 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 IFI27L1Q96BM0 104 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 ARHGAP5-AS1Q96IT6 56 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 ZNF714Q96N38 554 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 TXNDC17Q9BRA2 123 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 SLC50A1Q9BRV3 221 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 PSENENQ9NZ42 101 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 PRO2289Q9P1D8 64 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 LAMTOR3Q9UHA4 124 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 CMYA5Q8N3K9 4069 aa1.35□□□□□ -2.19
HMGB1-201ENST00000326004 HRNRQ86YZ3 2850 aaPredicted RBP1.34□□□□□ -2.19
HMGB1-201ENST00000326004 ROS1P08922 2347 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 DOCK10Q96BY6 2186 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 MUC4Q99102 2169 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 TMEM14DPA8MWL7 114 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 TMEM256-PLSCR3K7ERE1 68 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 CCKP06307 115 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 ACYP1P07311 99 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 ARL14EPLP0DKL9 152 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 CXCL8P10145 99 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 RPS27P42677 84 aaKnown RBP1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms