RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 RETNQ9HD89 108 aa10.92□□□□□ -0.66
USHBP1-202ENST00000324554 CMYA5Q8N3K9 4069 aa10.91□□□□□ -0.66
USHBP1-202ENST00000324554 LELP1Q5T871 98 aa10.91□□□□□ -0.66
USHBP1-202ENST00000324554 LINC00167Q96N53 147 aa10.9□□□□□ -0.66
USHBP1-202ENST00000324554 Q8N814 137 aa10.9□□□□□ -0.66
USHBP1-202ENST00000324554 IGKV3D-7A0A0C4DH55 119 aa10.89□□□□□ -0.67
USHBP1-202ENST00000324554 HIST1H4AP62805 103 aaKnown RBP10.89□□□□□ -0.67
USHBP1-202ENST00000324554 C3orf22Q8N5N4 141 aa10.88□□□□□ -0.67
USHBP1-202ENST00000324554 TMEM126AQ9H061 195 aa10.88□□□□□ -0.67
USHBP1-202ENST00000324554 C10orf25Q5T742 122 aa10.87□□□□□ -0.67
USHBP1-202ENST00000324554 C6orf223Q8N319 242 aa10.87□□□□□ -0.67
USHBP1-202ENST00000324554 Q6JHZ5 121 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 SMIM20Q8N5G0 67 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 LINC00526Q96FQ7 95 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 PRR34Q9NV39 138 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 NBEAL1Q6ZS30 2694 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 UQCRQO14949 82 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 SPAG11BQ08648 103 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 C9orf153Q5TBE3 101 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 KLK12Q9UKR0 248 aa10.86□□□□□ -0.67
USHBP1-202ENST00000324554 A0A1B0GX51 115 aa10.85□□□□□ -0.67
USHBP1-202ENST00000324554 CCKP06307 115 aa10.85□□□□□ -0.67
USHBP1-202ENST00000324554 C6orf99Q4VX62 202 aa10.85□□□□□ -0.67
USHBP1-202ENST00000324554 UNQ6190/PRO20217Q6UXQ8 127 aa10.85□□□□□ -0.67
USHBP1-202ENST00000324554 C2orf48Q96LS8 159 aa10.85□□□□□ -0.67
USHBP1-202ENST00000324554 TENM3Q9P273 2699 aa10.84□□□□□ -0.67
USHBP1-202ENST00000324554 A0A087WVE0 104 aa10.84□□□□□ -0.67
USHBP1-202ENST00000324554 EGFEM1PQ0D2K5 195 aa10.84□□□□□ -0.67
USHBP1-202ENST00000324554 ENHOQ6UWT2 76 aa10.84□□□□□ -0.67
USHBP1-202ENST00000324554 TMEM256-PLSCR3K7ERE1 68 aa10.83□□□□□ -0.68
USHBP1-202ENST00000324554 MDFIQ99750 246 aa10.83□□□□□ -0.68
USHBP1-202ENST00000324554 A0A0J9YWU9 116 aa10.82□□□□□ -0.68
USHBP1-202ENST00000324554 COX7CP15954 63 aa10.82□□□□□ -0.68
USHBP1-202ENST00000324554 LYPD5Q6UWN5 251 aa10.82□□□□□ -0.68
USHBP1-202ENST00000324554 JMJD7-PLA2G4BH0Y9G9 81 aa10.82□□□□□ -0.68
USHBP1-202ENST00000324554 MGAM2Q2M2H8 2515 aa10.81□□□□□ -0.68
USHBP1-202ENST00000324554 ATOX1O00244 68 aa10.81□□□□□ -0.68
USHBP1-202ENST00000324554 S100A7L2Q5SY68 101 aa10.81□□□□□ -0.68
USHBP1-202ENST00000324554 RPL18AQ02543 176 aaKnown RBP10.8□□□□□ -0.68
USHBP1-202ENST00000324554 MUC7Q8TAX7 377 aa10.8□□□□□ -0.68
USHBP1-202ENST00000324554 LINC00575Q6W349 94 aa10.79□□□□□ -0.68
USHBP1-202ENST00000324554 GVQW2A0A096LPI5 108 aaPredicted RBP10.77□□□□□ -0.69
USHBP1-202ENST00000324554 MRAPQ8TCY5 172 aa10.77□□□□□ -0.69
USHBP1-202ENST00000324554 C6orf48Q9UBA6 75 aa10.76□□□□□ -0.69
USHBP1-202ENST00000324554 IGLV6-57P01721 117 aa10.75□□□□□ -0.69
USHBP1-202ENST00000324554 WFDC10BQ8IUB3 73 aa10.75□□□□□ -0.69
USHBP1-202ENST00000324554 CYSTM1Q9H1C7 97 aa10.75□□□□□ -0.69
USHBP1-202ENST00000324554 CRYGAP11844 174 aa10.75□□□□□ -0.69
USHBP1-202ENST00000324554 KPRPQ5T749 579 aaPredicted RBP10.75□□□□□ -0.69
USHBP1-202ENST00000324554 hADV29S1A0JD25 119 aa10.74□□□□□ -0.69
USHBP1-202ENST00000324554 USP17L23D6RBM5 183 aa10.74□□□□□ -0.69
USHBP1-202ENST00000324554 H3BNG1 76 aa10.74□□□□□ -0.69
USHBP1-202ENST00000324554 Q6ZTC4 211 aa10.73□□□□□ -0.69
USHBP1-202ENST00000324554 XAGE1AQ9HD64 81 aa10.72□□□□□ -0.69
USHBP1-202ENST00000324554 Q6ZQT0 140 aa10.71□□□□□ -0.69
USHBP1-202ENST00000324554 SERP2Q8N6R1 65 aa10.71□□□□□ -0.69
USHBP1-202ENST00000324554 DNAH3Q8TD57 4116 aa10.71□□□□□ -0.7
USHBP1-202ENST00000324554 TRBV10-3A0A0K0K1G6 114 aa10.7□□□□□ -0.7
USHBP1-202ENST00000324554 FAM19A1Q7Z5A9 133 aa10.7□□□□□ -0.7
USHBP1-202ENST00000324554 ZNF561-AS1K7EIQ3 104 aa10.7□□□□□ -0.7
USHBP1-202ENST00000324554 M0R2N4 97 aa10.7□□□□□ -0.7
USHBP1-202ENST00000324554 RBM3P98179 157 aaKnown RBP10.7□□□□□ -0.7
USHBP1-202ENST00000324554 KRTAP26-1Q6PEX3 210 aa10.7□□□□□ -0.7
USHBP1-202ENST00000324554 K7EIL1 84 aa10.69□□□□□ -0.7
USHBP1-202ENST00000324554 HIGD2BQ4VC39 106 aa10.69□□□□□ -0.7
USHBP1-202ENST00000324554 Q6ZQY7 126 aa10.69□□□□□ -0.7
USHBP1-202ENST00000324554 UPK3BQ9BT76 320 aa10.69□□□□□ -0.7
USHBP1-202ENST00000324554 LAMTOR3Q9UHA4 124 aa10.69□□□□□ -0.7
USHBP1-202ENST00000324554 ATP5EP2Q5VTU8 51 aa10.68□□□□□ -0.7
USHBP1-202ENST00000324554 UBL5Q9BZL1 73 aa10.68□□□□□ -0.7
USHBP1-202ENST00000324554 CAMK2N2Q96S95 79 aa10.67□□□□□ -0.7
USHBP1-202ENST00000324554 TRAV23DV6A0A075B6W5 121 aa10.67□□□□□ -0.7
USHBP1-202ENST00000324554 LOC110117498A0A087WWA1 95 aa10.67□□□□□ -0.7
USHBP1-202ENST00000324554 ESRGQ1W209 222 aa10.67□□□□□ -0.7
USHBP1-202ENST00000324554 C15orf56Q8N910 161 aa10.65□□□□□ -0.7
USHBP1-202ENST00000324554 Q6ZRU5 148 aa10.64□□□□□ -0.71
USHBP1-202ENST00000324554 DIRC1Q969H9 104 aa10.64□□□□□ -0.71
USHBP1-202ENST00000324554 LOC107984640A0A0U1RRK4 108 aa10.63□□□□□ -0.71
USHBP1-202ENST00000324554 ZNF73O43830 326 aaPredicted RBP10.63□□□□□ -0.71
USHBP1-202ENST00000324554 VPREB1P12018 145 aa10.63□□□□□ -0.71
USHBP1-202ENST00000324554 GHRHP01286 108 aa10.62□□□□□ -0.71
USHBP1-202ENST00000324554 C11orf45Q8TAV5 145 aa10.62□□□□□ -0.71
USHBP1-202ENST00000324554 DSCR8Q96T75 97 aa10.62□□□□□ -0.71
USHBP1-202ENST00000324554 COL7A1Q02388 2944 aa10.61□□□□□ -0.71
USHBP1-202ENST00000324554 LINC01556Q5JQF7 62 aa10.6□□□□□ -0.71
USHBP1-202ENST00000324554 C1orf43Q9BWL3 253 aa10.6□□□□□ -0.71
USHBP1-202ENST00000324554 DEFB131BA0A096LNP1 70 aa10.6□□□□□ -0.71
USHBP1-202ENST00000324554 NDUFC2-KCTD14E9PQ53 114 aa10.6□□□□□ -0.71
USHBP1-202ENST00000324554 COX7BP24311 80 aa10.59□□□□□ -0.71
USHBP1-202ENST00000324554 ELOF1P60002 83 aaKnown RBP10.59□□□□□ -0.71
USHBP1-202ENST00000324554 Q6ZVQ6 151 aa10.59□□□□□ -0.71
USHBP1-202ENST00000324554 LINC01547P58512 204 aaPredicted RBP10.59□□□□□ -0.71
USHBP1-202ENST00000324554 IGKV2D-24A0A075B6R9 120 aa10.58□□□□□ -0.72
USHBP1-202ENST00000324554 H3BQ85 93 aa10.57□□□□□ -0.72
USHBP1-202ENST00000324554 M0R378 163 aa10.57□□□□□ -0.72
USHBP1-202ENST00000324554 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.57□□□□□ -0.72
USHBP1-202ENST00000324554 TRBV7-6A0A0J9YX20 115 aa10.57□□□□□ -0.72
USHBP1-202ENST00000324554 HAMPP81172 84 aa10.57□□□□□ -0.72
USHBP1-202ENST00000324554 TM2D3Q9BRN9 247 aa10.57□□□□□ -0.72
USHBP1-202ENST00000324554 Q6ZRP5 223 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms