RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 HIST1H2BHQ93079 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 ZNF625Q96I27 306 aaPredicted RBP9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST1H2BNQ99877 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST1H2BMQ99879 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 ERG28Q9UKR5 140 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 RPL37AP8A6NKH3 93 aa9.82□□□□□ -0.84
LSM1-201ENST00000311351 NUPR1O60356 82 aa9.82□□□□□ -0.84
LSM1-201ENST00000311351 LINC00167Q96N53 147 aa9.82□□□□□ -0.84
LSM1-201ENST00000311351 LRP2P98164 4655 aa9.81□□□□□ -0.84
LSM1-201ENST00000311351 IGLV5-37A0A075B6J1 123 aa9.81□□□□□ -0.84
LSM1-201ENST00000311351 H0Y8G0 127 aa9.8□□□□□ -0.84
LSM1-201ENST00000311351 ZNF861PO60384 105 aa9.8□□□□□ -0.84
LSM1-201ENST00000311351 FABP4P15090 132 aa9.8□□□□□ -0.84
LSM1-201ENST00000311351 PLNP26678 52 aa9.8□□□□□ -0.84
LSM1-201ENST00000311351 NKAPP1Q8N9T2 125 aa9.8□□□□□ -0.84
LSM1-201ENST00000311351 TMEM223A0PJW6 202 aa9.79□□□□□ -0.84
LSM1-201ENST00000311351 MAP1LC3CQ9BXW4 147 aa9.79□□□□□ -0.84
LSM1-201ENST00000311351 SND1-IT1Q9HBX3 110 aa9.79□□□□□ -0.84
LSM1-201ENST00000311351 BCE1O60756 84 aa9.78□□□□□ -0.84
LSM1-201ENST00000311351 VPREB1P12018 145 aa9.77□□□□□ -0.85
LSM1-201ENST00000311351 COX17Q14061 63 aa9.77□□□□□ -0.85
LSM1-201ENST00000311351 Q8NDZ9 215 aa9.77□□□□□ -0.85
LSM1-201ENST00000311351 IGLV1-50A0A075B6I6 118 aa9.76□□□□□ -0.85
LSM1-201ENST00000311351 IGKV2-28A0A075B6P5 120 aa9.76□□□□□ -0.85
LSM1-201ENST00000311351 ATP6V1G1O75348 118 aa9.76□□□□□ -0.85
LSM1-201ENST00000311351 DPM2O94777 84 aa9.76□□□□□ -0.85
LSM1-201ENST00000311351 IGKV2D-28P01615 120 aa9.76□□□□□ -0.85
LSM1-201ENST00000311351 A0A0U1RRA0 63 aa9.74□□□□□ -0.85
LSM1-201ENST00000311351 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.74□□□□□ -0.85
LSM1-201ENST00000311351 RPL28P46779 137 aaKnown RBP9.74□□□□□ -0.85
LSM1-201ENST00000311351 HERVK_113P61574 105 aa9.74□□□□□ -0.85
LSM1-201ENST00000311351 COA6Q5JTJ3 125 aaKnown RBP9.73□□□□□ -0.85
LSM1-201ENST00000311351 IGKCP01834 107 aa9.72□□□□□ -0.85
LSM1-201ENST00000311351 LINC00158P58513 81 aa9.72□□□□□ -0.85
LSM1-201ENST00000311351 KRTAP13-1Q8IUC0 172 aa9.72□□□□□ -0.85
LSM1-201ENST00000311351 LINC00587B1AMM8 73 aa9.71□□□□□ -0.86
LSM1-201ENST00000311351 UBE2AP49459 152 aa9.71□□□□□ -0.86
LSM1-201ENST00000311351 HERV-K104P63124 156 aa9.71□□□□□ -0.86
LSM1-201ENST00000311351 RPL24P83731 157 aaKnown RBP9.71□□□□□ -0.86
LSM1-201ENST00000311351 PLEKHB2Q96CS7 222 aa9.71□□□□□ -0.86
LSM1-201ENST00000311351 KRTAP9-2Q9BYQ4 174 aa9.71□□□□□ -0.86
LSM1-201ENST00000311351 TMEM238C9JI98 176 aa9.7□□□□□ -0.86
LSM1-201ENST00000311351 SYS1-DBNDD2H3BUS1 97 aa9.7□□□□□ -0.86
LSM1-201ENST00000311351 MYMXA0A1B0GTQ4 84 aa9.69□□□□□ -0.86
LSM1-201ENST00000311351 LEPROTO15243 131 aa9.69□□□□□ -0.86
LSM1-201ENST00000311351 SMIM13P0DJ93 91 aa9.69□□□□□ -0.86
LSM1-201ENST00000311351 RPL13AP40429 203 aaKnown RBP9.69□□□□□ -0.86
LSM1-201ENST00000311351 TSPEAR-AS2P59090 65 aa9.69□□□□□ -0.86
LSM1-201ENST00000311351 MEIG1Q5JSS6 88 aa9.69□□□□□ -0.86
LSM1-201ENST00000311351 PMCHL2Q9BQD1 86 aa9.69□□□□□ -0.86
LSM1-201ENST00000311351 NDUFA12Q9UI09 145 aa9.69□□□□□ -0.86
LSM1-201ENST00000311351 A0A087X002 238 aa9.68□□□□□ -0.86
LSM1-201ENST00000311351 PRLHP81277 87 aa9.68□□□□□ -0.86
LSM1-201ENST00000311351 PET117Q6UWS5 81 aa9.68□□□□□ -0.86
LSM1-201ENST00000311351 TMEM126AQ9H061 195 aa9.68□□□□□ -0.86
LSM1-201ENST00000311351 NMUP48645 174 aa9.67□□□□□ -0.86
LSM1-201ENST00000311351 KRTAP9-6A0A140TA67 174 aa9.66□□□□□ -0.86
LSM1-201ENST00000311351 J3QQQ9 107 aa9.66□□□□□ -0.86
LSM1-201ENST00000311351 M0R378 163 aa9.66□□□□□ -0.86
LSM1-201ENST00000311351 LGALS3P17931 250 aaKnown RBP9.66□□□□□ -0.86
LSM1-201ENST00000311351 FAM19A1Q7Z5A9 133 aa9.66□□□□□ -0.86
LSM1-201ENST00000311351 MIR7-3HGQ8N6C7 128 aa9.66□□□□□ -0.86
LSM1-201ENST00000311351 ANAPC11Q9NYG5 84 aa9.66□□□□□ -0.86
LSM1-201ENST00000311351 RNF213Q63HN8 5207 aa9.65□□□□□ -0.86
LSM1-201ENST00000311351 LINC01545Q5VT33 79 aa9.65□□□□□ -0.86
LSM1-201ENST00000311351 C20orf202A1L168 122 aa9.64□□□□□ -0.87
LSM1-201ENST00000311351 AKR1D1P51857 326 aa9.64□□□□□ -0.87
LSM1-201ENST00000311351 BOD1L2Q8IYS8 172 aa9.64□□□□□ -0.87
LSM1-201ENST00000311351 LPAP08519 4548 aa9.63□□□□□ -0.87
LSM1-201ENST00000311351 NCR3O14931 201 aa9.63□□□□□ -0.87
LSM1-201ENST00000311351 KRTDAPP60985 99 aa9.63□□□□□ -0.87
LSM1-201ENST00000311351 C4orf48Q5BLP8 95 aa9.63□□□□□ -0.87
LSM1-201ENST00000311351 E9PLD3 99 aa9.62□□□□□ -0.87
LSM1-201ENST00000311351 C3orf79P0CE67 100 aa9.62□□□□□ -0.87
LSM1-201ENST00000311351 CRYGAP11844 174 aa9.62□□□□□ -0.87
LSM1-201ENST00000311351 DAND5Q8N907 189 aa9.61□□□□□ -0.87
LSM1-201ENST00000311351 S100A6P06703 90 aa9.6□□□□□ -0.87
LSM1-201ENST00000311351 KRTAP13-2Q52LG2 175 aa9.6□□□□□ -0.87
LSM1-201ENST00000311351 TYMSOSQ8TAI1 123 aa9.6□□□□□ -0.87
LSM1-201ENST00000311351 S100A2P29034 98 aa9.59□□□□□ -0.87
LSM1-201ENST00000311351 TSPAN13O95857 204 aa9.58□□□□□ -0.88
LSM1-201ENST00000311351 HIGD2AQ9BW72 106 aa9.58□□□□□ -0.88
LSM1-201ENST00000311351 PRYO14603 147 aa9.56□□□□□ -0.88
LSM1-201ENST00000311351 FAM229BQ4G0N7 80 aa9.56□□□□□ -0.88
LSM1-201ENST00000311351 MIEN1Q9BRT3 115 aa9.56□□□□□ -0.88
LSM1-201ENST00000311351 IGKV2D-26A0A0A0MRZ7 120 aa9.55□□□□□ -0.88
LSM1-201ENST00000311351 TRBV10-3A0A0K0K1G6 114 aa9.55□□□□□ -0.88
LSM1-201ENST00000311351 PRR4Q16378 134 aa9.55□□□□□ -0.88
LSM1-201ENST00000311351 HIST3H2BBQ8N257 126 aa9.55□□□□□ -0.88
LSM1-201ENST00000311351 LOC107984156A0A0G2JMH3 177 aa9.53□□□□□ -0.88
LSM1-201ENST00000311351 SPRR1AP35321 89 aa9.53□□□□□ -0.88
LSM1-201ENST00000311351 ARL17AQ8IVW1 177 aa9.53□□□□□ -0.88
LSM1-201ENST00000311351 KCNQ1DNQ9H478 68 aa9.53□□□□□ -0.88
LSM1-201ENST00000311351 A0A0J9YXY3 114 aa9.52□□□□□ -0.89
LSM1-201ENST00000311351 SNRPEP62304 92 aaKnown RBP9.52□□□□□ -0.89
LSM1-201ENST00000311351 HIST1H2BLQ99880 126 aa9.52□□□□□ -0.89
LSM1-201ENST00000311351 ZNF815PA8K554 130 aa9.51□□□□□ -0.89
LSM1-201ENST00000311351 KRTAP4-16G5E9R7 235 aaPredicted RBP9.51□□□□□ -0.89
LSM1-201ENST00000311351 NPC2P61916 151 aa9.51□□□□□ -0.89
LSM1-201ENST00000311351 S100A12P80511 92 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms