RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 TMEM223A0PJW6 202 aa11.82□□□□□ -0.52
PDZRN3-202ENST00000308537 COX17Q14061 63 aa11.82□□□□□ -0.52
PDZRN3-202ENST00000308537 KRTAP13-1Q8IUC0 172 aa11.82□□□□□ -0.52
PDZRN3-202ENST00000308537 Q8NDZ9 215 aa11.82□□□□□ -0.52
PDZRN3-202ENST00000308537 ZNF625Q96I27 306 aaPredicted RBP11.82□□□□□ -0.52
PDZRN3-202ENST00000308537 RPL37AP8A6NKH3 93 aa11.81□□□□□ -0.52
PDZRN3-202ENST00000308537 BCE1O60756 84 aa11.81□□□□□ -0.52
PDZRN3-202ENST00000308537 ERG28Q9UKR5 140 aa11.81□□□□□ -0.52
PDZRN3-202ENST00000308537 VPREB1P12018 145 aa11.8□□□□□ -0.52
PDZRN3-202ENST00000308537 PFN2P35080 140 aa11.8□□□□□ -0.52
PDZRN3-202ENST00000308537 SND1-IT1Q9HBX3 110 aa11.8□□□□□ -0.52
PDZRN3-202ENST00000308537 GAGE10A6NGK3 116 aa11.79□□□□□ -0.52
PDZRN3-202ENST00000308537 DPM2O94777 84 aa11.79□□□□□ -0.52
PDZRN3-202ENST00000308537 HERVK_113P61574 105 aa11.78□□□□□ -0.52
PDZRN3-202ENST00000308537 LINC00587B1AMM8 73 aa11.77□□□□□ -0.53
PDZRN3-202ENST00000308537 ATP6V1G1O75348 118 aa11.75□□□□□ -0.53
PDZRN3-202ENST00000308537 IGKCP01834 107 aa11.75□□□□□ -0.53
PDZRN3-202ENST00000308537 HERV-K104P63124 156 aa11.75□□□□□ -0.53
PDZRN3-202ENST00000308537 A0A087X002 238 aa11.74□□□□□ -0.53
PDZRN3-202ENST00000308537 RPL28P46779 137 aaKnown RBP11.74□□□□□ -0.53
PDZRN3-202ENST00000308537 NKAPP1Q8N9T2 125 aa11.74□□□□□ -0.53
PDZRN3-202ENST00000308537 PLEKHB2Q96CS7 222 aa11.74□□□□□ -0.53
PDZRN3-202ENST00000308537 MYMXA0A1B0GTQ4 84 aa11.73□□□□□ -0.53
PDZRN3-202ENST00000308537 LINC00158P58513 81 aa11.73□□□□□ -0.53
PDZRN3-202ENST00000308537 COA6Q5JTJ3 125 aaKnown RBP11.73□□□□□ -0.53
PDZRN3-202ENST00000308537 RNF213Q63HN8 5207 aa11.73□□□□□ -0.53
PDZRN3-202ENST00000308537 IGKV2-28A0A075B6P5 120 aa11.72□□□□□ -0.53
PDZRN3-202ENST00000308537 IGKV2D-28P01615 120 aa11.72□□□□□ -0.53
PDZRN3-202ENST00000308537 RPL13AP40429 203 aaKnown RBP11.72□□□□□ -0.53
PDZRN3-202ENST00000308537 RPL24P83731 157 aaKnown RBP11.72□□□□□ -0.53
PDZRN3-202ENST00000308537 NDUFA12Q9UI09 145 aa11.72□□□□□ -0.53
PDZRN3-202ENST00000308537 SYS1-DBNDD2H3BUS1 97 aa11.71□□□□□ -0.53
PDZRN3-202ENST00000308537 LEPROTO15243 131 aa11.71□□□□□ -0.53
PDZRN3-202ENST00000308537 MEIG1Q5JSS6 88 aa11.71□□□□□ -0.53
PDZRN3-202ENST00000308537 PET117Q6UWS5 81 aa11.7□□□□□ -0.54
PDZRN3-202ENST00000308537 PMCHL2Q9BQD1 86 aa11.7□□□□□ -0.54
PDZRN3-202ENST00000308537 TMEM238C9JI98 176 aa11.68□□□□□ -0.54
PDZRN3-202ENST00000308537 M0R378 163 aa11.68□□□□□ -0.54
PDZRN3-202ENST00000308537 LGALS3P17931 250 aaKnown RBP11.68□□□□□ -0.54
PDZRN3-202ENST00000308537 NMUP48645 174 aa11.68□□□□□ -0.54
PDZRN3-202ENST00000308537 TMEM126AQ9H061 195 aa11.68□□□□□ -0.54
PDZRN3-202ENST00000308537 J3QQQ9 107 aa11.67□□□□□ -0.54
PDZRN3-202ENST00000308537 ANAPC11Q9NYG5 84 aa11.67□□□□□ -0.54
PDZRN3-202ENST00000308537 KRTAP13-2Q52LG2 175 aa11.66□□□□□ -0.54
PDZRN3-202ENST00000308537 A0A0U1RRA0 63 aa11.65□□□□□ -0.54
PDZRN3-202ENST00000308537 TSPEAR-AS2P59090 65 aa11.65□□□□□ -0.54
PDZRN3-202ENST00000308537 PRLHP81277 87 aa11.65□□□□□ -0.54
PDZRN3-202ENST00000308537 C20orf202A1L168 122 aa11.64□□□□□ -0.55
PDZRN3-202ENST00000308537 SMIM13P0DJ93 91 aa11.64□□□□□ -0.55
PDZRN3-202ENST00000308537 UBE2AP49459 152 aa11.64□□□□□ -0.55
PDZRN3-202ENST00000308537 AKR1D1P51857 326 aa11.64□□□□□ -0.55
PDZRN3-202ENST00000308537 LINC01545Q5VT33 79 aa11.64□□□□□ -0.55
PDZRN3-202ENST00000308537 KRTDAPP60985 99 aa11.63□□□□□ -0.55
PDZRN3-202ENST00000308537 E9PLD3 99 aa11.62□□□□□ -0.55
PDZRN3-202ENST00000308537 C3orf79P0CE67 100 aa11.62□□□□□ -0.55
PDZRN3-202ENST00000308537 CRYGAP11844 174 aa11.62□□□□□ -0.55
PDZRN3-202ENST00000308537 FAM19A1Q7Z5A9 133 aa11.6□□□□□ -0.55
PDZRN3-202ENST00000308537 MIR7-3HGQ8N6C7 128 aa11.6□□□□□ -0.55
PDZRN3-202ENST00000308537 S100A6P06703 90 aa11.59□□□□□ -0.55
PDZRN3-202ENST00000308537 S100A2P29034 98 aa11.59□□□□□ -0.55
PDZRN3-202ENST00000308537 FAM229BQ4G0N7 80 aa11.59□□□□□ -0.55
PDZRN3-202ENST00000308537 BOD1L2Q8IYS8 172 aa11.58□□□□□ -0.56
PDZRN3-202ENST00000308537 TYMSOSQ8TAI1 123 aa11.58□□□□□ -0.56
PDZRN3-202ENST00000308537 MIEN1Q9BRT3 115 aa11.57□□□□□ -0.56
PDZRN3-202ENST00000308537 SPRR1AP35321 89 aa11.56□□□□□ -0.56
PDZRN3-202ENST00000308537 IGKV2D-26A0A0A0MRZ7 120 aa11.55□□□□□ -0.56
PDZRN3-202ENST00000308537 LOC107984156A0A0G2JMH3 177 aa11.55□□□□□ -0.56
PDZRN3-202ENST00000308537 KRTAP4-16G5E9R7 235 aaPredicted RBP11.55□□□□□ -0.56
PDZRN3-202ENST00000308537 ARL17AQ8IVW1 177 aa11.55□□□□□ -0.56
PDZRN3-202ENST00000308537 TSPAN13O95857 204 aa11.54□□□□□ -0.56
PDZRN3-202ENST00000308537 S100A12P80511 92 aa11.54□□□□□ -0.56
PDZRN3-202ENST00000308537 KCNQ1DNQ9H478 68 aa11.53□□□□□ -0.56
PDZRN3-202ENST00000308537 NCR3O14931 201 aa11.52□□□□□ -0.57
PDZRN3-202ENST00000308537 DAND5Q8N907 189 aa11.52□□□□□ -0.57
PDZRN3-202ENST00000308537 A0A0J9YXY3 114 aa11.51□□□□□ -0.57
PDZRN3-202ENST00000308537 PRYO14603 147 aa11.51□□□□□ -0.57
PDZRN3-202ENST00000308537 PRR4Q16378 134 aa11.51□□□□□ -0.57
PDZRN3-202ENST00000308537 HIST3H2BBQ8N257 126 aa11.5□□□□□ -0.57
PDZRN3-202ENST00000308537 HIGD2AQ9BW72 106 aa11.5□□□□□ -0.57
PDZRN3-202ENST00000308537 TRBV10-3A0A0K0K1G6 114 aa11.49□□□□□ -0.57
PDZRN3-202ENST00000308537 ZNF815PA8K554 130 aa11.49□□□□□ -0.57
PDZRN3-202ENST00000308537 SNRPEP62304 92 aaKnown RBP11.49□□□□□ -0.57
PDZRN3-202ENST00000308537 C3orf22Q8N5N4 141 aa11.49□□□□□ -0.57
PDZRN3-202ENST00000308537 LINC00337Q8N6G1 96 aa11.49□□□□□ -0.57
PDZRN3-202ENST00000308537 SPRR4Q96PI1 79 aa11.49□□□□□ -0.57
PDZRN3-202ENST00000308537 TRBV10-2A0A0K0K1G8 114 aa11.47□□□□□ -0.57
PDZRN3-202ENST00000308537 EIF4EBP3O60516 100 aaPredicted RBP11.47□□□□□ -0.57
PDZRN3-202ENST00000308537 TIMM17BO60830 172 aa11.47□□□□□ -0.57
PDZRN3-202ENST00000308537 LINC00304Q8N9R0 145 aa11.47□□□□□ -0.57
PDZRN3-202ENST00000308537 HIST1H2BLQ99880 126 aa11.47□□□□□ -0.57
PDZRN3-202ENST00000308537 NDUFC2O95298 119 aa11.46□□□□□ -0.57
PDZRN3-202ENST00000308537 MUC2Q02817 5179 aa11.45□□□□□ -0.58
PDZRN3-202ENST00000308537 SOSTDC1Q6X4U4 206 aa11.45□□□□□ -0.58
PDZRN3-202ENST00000308537 SMCR5Q8TEV8 140 aa11.45□□□□□ -0.58
PDZRN3-202ENST00000308537 SPANXB1Q9NS25 103 aaPredicted RBP11.45□□□□□ -0.58
PDZRN3-202ENST00000308537 SCGB1D4Q6XE38 83 aa11.44□□□□□ -0.58
PDZRN3-202ENST00000308537 HSBP1L1C9JCN9 74 aa11.43□□□□□ -0.58
PDZRN3-202ENST00000308537 ADAMTSL4-AS1Q5T5F5 129 aa11.43□□□□□ -0.58
PDZRN3-202ENST00000308537 ATOH7Q8N100 152 aa11.43□□□□□ -0.58
PDZRN3-202ENST00000308537 COPS9Q8WXC6 57 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms