RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 EPM2AB3EWF7 344 aa9.28□□□□□ -0.92
CHRFAM7A-201ENST00000299847 NHLRC4P0CG21 123 aaPredicted RBP9.28□□□□□ -0.92
CHRFAM7A-201ENST00000299847 MUC4Q99102 2169 aa9.28□□□□□ -0.92
CHRFAM7A-201ENST00000299847 NAV2Q8IVL1 2488 aa9.27□□□□□ -0.93
CHRFAM7A-201ENST00000299847 ELOF1P60002 83 aaKnown RBP9.27□□□□□ -0.93
CHRFAM7A-201ENST00000299847 CCDC168Q8NDH2 2452 aa9.26□□□□□ -0.93
CHRFAM7A-201ENST00000299847 C2CD3Q4AC94 2353 aa9.25□□□□□ -0.93
CHRFAM7A-201ENST00000299847 KRTAP24-1Q3LI83 254 aa9.25□□□□□ -0.93
CHRFAM7A-201ENST00000299847 Q6ZQT0 140 aa9.24□□□□□ -0.93
CHRFAM7A-201ENST00000299847 TYMSOSQ8TAI1 123 aa9.24□□□□□ -0.93
CHRFAM7A-201ENST00000299847 ACYP2P14621 99 aa9.23□□□□□ -0.93
CHRFAM7A-201ENST00000299847 LINC00313P59037 77 aa9.23□□□□□ -0.93
CHRFAM7A-201ENST00000299847 LINC00588Q9Y4M8 146 aa9.23□□□□□ -0.93
CHRFAM7A-201ENST00000299847 Q96NJ1 140 aa9.23□□□□□ -0.93
CHRFAM7A-201ENST00000299847 TM2D3Q9BRN9 247 aa9.23□□□□□ -0.93
CHRFAM7A-201ENST00000299847 IGF2RP11717 2491 aa9.22□□□□□ -0.93
CHRFAM7A-201ENST00000299847 Q6ZRX8 168 aa9.22□□□□□ -0.93
CHRFAM7A-201ENST00000299847 GOLGB1Q14789 3259 aaKnown RBP9.22□□□□□ -0.93
CHRFAM7A-201ENST00000299847 COL4A2P08572 1712 aa9.21□□□□□ -0.93
CHRFAM7A-201ENST00000299847 C16orf90A8MZG2 172 aa9.2□□□□□ -0.94
CHRFAM7A-201ENST00000299847 Q6ZRP5 223 aa9.2□□□□□ -0.94
CHRFAM7A-201ENST00000299847 CACNA1AO00555 2505 aa9.19□□□□□ -0.94
CHRFAM7A-201ENST00000299847 WDR87Q6ZQQ6 2873 aa9.18□□□□□ -0.94
CHRFAM7A-201ENST00000299847 NBDYA0A0U1RRE5 68 aa9.18□□□□□ -0.94
CHRFAM7A-201ENST00000299847 IGLV5-45A0A087WSX0 123 aa9.18□□□□□ -0.94
CHRFAM7A-201ENST00000299847 PRO0461Q9UI25 63 aa9.18□□□□□ -0.94
CHRFAM7A-201ENST00000299847 Q8NAQ8 132 aa9.17□□□□□ -0.94
CHRFAM7A-201ENST00000299847 Q8NBF4 154 aa9.17□□□□□ -0.94
CHRFAM7A-201ENST00000299847 FAM229AH3BQW9 127 aa9.17□□□□□ -0.94
CHRFAM7A-201ENST00000299847 TP53AIP1Q9HCN2 124 aa9.17□□□□□ -0.94
CHRFAM7A-201ENST00000299847 ATP11AUNQ6ZP68 121 aa9.16□□□□□ -0.94
CHRFAM7A-201ENST00000299847 SERTAD4-AS1Q5TG53 156 aa9.15□□□□□ -0.94
CHRFAM7A-201ENST00000299847 NCOR2Q9Y618 2525 aa9.15□□□□□ -0.94
CHRFAM7A-201ENST00000299847 A0A0G2JQZ4 141 aa9.13□□□□□ -0.95
CHRFAM7A-201ENST00000299847 A0A1W2PNN7 141 aa9.13□□□□□ -0.95
CHRFAM7A-201ENST00000299847 DNAH10OSP0CZ25 163 aa9.13□□□□□ -0.95
CHRFAM7A-201ENST00000299847 K7EQZ3 153 aa9.13□□□□□ -0.95
CHRFAM7A-201ENST00000299847 LOC110117498A0A087WWA1 95 aa9.12□□□□□ -0.95
CHRFAM7A-201ENST00000299847 TRAV22A0A0B4J277 110 aa9.12□□□□□ -0.95
CHRFAM7A-201ENST00000299847 SPINT4Q6UDR6 99 aa9.11□□□□□ -0.95
CHRFAM7A-201ENST00000299847 PRO0628Q9UI54 55 aa9.11□□□□□ -0.95
CHRFAM7A-201ENST00000299847 BCE1O60756 84 aa9.11□□□□□ -0.95
CHRFAM7A-201ENST00000299847 TRBV7-4A0A0J9YYF1 115 aa9.1□□□□□ -0.95
CHRFAM7A-201ENST00000299847 C9orf92A6NGG3 77 aa9.1□□□□□ -0.95
CHRFAM7A-201ENST00000299847 DSCR10P59022 87 aa9.09□□□□□ -0.95
CHRFAM7A-201ENST00000299847 H3BNG1 76 aa9.09□□□□□ -0.95
CHRFAM7A-201ENST00000299847 GVQW2A0A096LPI5 108 aaPredicted RBP9.09□□□□□ -0.95
CHRFAM7A-201ENST00000299847 LITAFQ99732 161 aa9.08□□□□□ -0.96
CHRFAM7A-201ENST00000299847 CENPFP49454 3210 aa9.07□□□□□ -0.96
CHRFAM7A-201ENST00000299847 MYO18BQ8IUG5 2567 aa9.07□□□□□ -0.96
CHRFAM7A-201ENST00000299847 VPREB1P12018 145 aa9.07□□□□□ -0.96
CHRFAM7A-201ENST00000299847 KRTAP10-11P60412 298 aa9.06□□□□□ -0.96
CHRFAM7A-201ENST00000299847 ANAPC11Q9NYG5 84 aa9.05□□□□□ -0.96
CHRFAM7A-201ENST00000299847 SSBP3-AS1Q7Z2R9 100 aa9.05□□□□□ -0.96
CHRFAM7A-201ENST00000299847 EIF4EBP3O60516 100 aaPredicted RBP9.04□□□□□ -0.96
CHRFAM7A-201ENST00000299847 DOPEY1Q5JWR5 2465 aa9.04□□□□□ -0.96
CHRFAM7A-201ENST00000299847 J3QL48 77 aa9.04□□□□□ -0.96
CHRFAM7A-201ENST00000299847 IGLV6-57P01721 117 aa9.03□□□□□ -0.96
CHRFAM7A-201ENST00000299847 A8MWP4 228 aa9.03□□□□□ -0.96
CHRFAM7A-201ENST00000299847 APLNQ9ULZ1 77 aa9.03□□□□□ -0.96
CHRFAM7A-201ENST00000299847 PCSK5Q92824 1860 aa9.03□□□□□ -0.96
CHRFAM7A-201ENST00000299847 SMR3BP02814 79 aaPredicted RBP9.02□□□□□ -0.96
CHRFAM7A-201ENST00000299847 COA5Q86WW8 74 aa9.02□□□□□ -0.96
CHRFAM7A-201ENST00000299847 IGLV1-50A0A075B6I6 118 aa9.02□□□□□ -0.97
CHRFAM7A-201ENST00000299847 A8MUN3 132 aa9.01□□□□□ -0.97
CHRFAM7A-201ENST00000299847 OBSCN-AS1Q96MR7 158 aa9.01□□□□□ -0.97
CHRFAM7A-201ENST00000299847 MRPL34Q9BQ48 92 aaKnown RBP9.01□□□□□ -0.97
CHRFAM7A-201ENST00000299847 LINC01600Q96MT4 127 aa9□□□□□ -0.97
CHRFAM7A-201ENST00000299847 IGFL1Q6UW32 110 aa9□□□□□ -0.97
CHRFAM7A-201ENST00000299847 C8orf87E5RJ46 101 aa9□□□□□ -0.97
CHRFAM7A-201ENST00000299847 LRRK2Q5S007 2527 aa9□□□□□ -0.97
CHRFAM7A-201ENST00000299847 COX6B2Q6YFQ2 88 aa8.98□□□□□ -0.97
CHRFAM7A-201ENST00000299847 C15orf56Q8N910 161 aa8.98□□□□□ -0.97
CHRFAM7A-201ENST00000299847 H3BPC8 53 aa8.98□□□□□ -0.97
CHRFAM7A-201ENST00000299847 KRTAP10-3P60369 221 aa8.97□□□□□ -0.97
CHRFAM7A-201ENST00000299847 CSNK1G2-AS1Q8NCQ2 148 aa8.97□□□□□ -0.97
CHRFAM7A-201ENST00000299847 WWC2-AS2Q96NR7 200 aa8.96□□□□□ -0.97
CHRFAM7A-201ENST00000299847 C9orf129Q5T035 196 aaKnown RBP8.96□□□□□ -0.97
CHRFAM7A-201ENST00000299847 FN1P02751 2386 aaKnown RBP8.96□□□□□ -0.98
CHRFAM7A-201ENST00000299847 K7EIL1 84 aa8.95□□□□□ -0.98
CHRFAM7A-201ENST00000299847 JMJD1CQ15652 2540 aa8.95□□□□□ -0.98
CHRFAM7A-201ENST00000299847 LOC101927531A0A1B0GV80 90 aa8.95□□□□□ -0.98
CHRFAM7A-201ENST00000299847 A0A1B0GW54 56 aa8.95□□□□□ -0.98
CHRFAM7A-201ENST00000299847 RPS28P62857 69 aaKnown RBP8.92□□□□□ -0.98
CHRFAM7A-201ENST00000299847 KCNQ1DNQ9H478 68 aa8.92□□□□□ -0.98
CHRFAM7A-201ENST00000299847 C8orf17Q9NRJ1 99 aa8.92□□□□□ -0.98
CHRFAM7A-201ENST00000299847 CASC10Q5T4H9 136 aa8.91□□□□□ -0.98
CHRFAM7A-201ENST00000299847 ABCA12Q86UK0 2595 aa8.91□□□□□ -0.98
CHRFAM7A-201ENST00000299847 LINC00528Q8N1L1 170 aa8.9□□□□□ -0.98
CHRFAM7A-201ENST00000299847 Q8N377 158 aa8.9□□□□□ -0.98
CHRFAM7A-201ENST00000299847 LINC00304Q8N9R0 145 aa8.9□□□□□ -0.98
CHRFAM7A-201ENST00000299847 MYO9AB2RTY4 2548 aa8.9□□□□□ -0.98
CHRFAM7A-201ENST00000299847 LINC01554Q52M75 96 aa8.88□□□□□ -0.99
CHRFAM7A-201ENST00000299847 PRR15Q8IV56 129 aa8.87□□□□□ -0.99
CHRFAM7A-201ENST00000299847 TLN1Q9Y490 2541 aaKnown RBP8.87□□□□□ -0.99
CHRFAM7A-201ENST00000299847 A0A0D9SG42 100 aa8.87□□□□□ -0.99
CHRFAM7A-201ENST00000299847 GIG44P09565 113 aaPredicted RBP8.86□□□□□ -0.99
CHRFAM7A-201ENST00000299847 A0A1B0GVX0 72 aa8.86□□□□□ -0.99
CHRFAM7A-201ENST00000299847 MIR22HGQ0VDD5 57 aa8.85□□□□□ -0.99
CHRFAM7A-201ENST00000299847 ZNF861PO60384 105 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms