RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 LINC01561Q8N1V8 128 aa6.92□□□□□ -1.3
LIG3-201ENST00000262327 ATRQ13535 2644 aa6.92□□□□□ -1.3
LIG3-201ENST00000262327 H0YGX0 51 aa6.91□□□□□ -1.3
LIG3-201ENST00000262327 ANGP03950 147 aaKnown RBP6.91□□□□□ -1.3
LIG3-201ENST00000262327 HTN3P15516 51 aa6.91□□□□□ -1.3
LIG3-201ENST00000262327 WFDC9Q8NEX5 89 aa6.91□□□□□ -1.3
LIG3-201ENST00000262327 DEFB135Q30KP9 77 aa6.9□□□□□ -1.3
LIG3-201ENST00000262327 C9orf66Q5T8R8 295 aa6.9□□□□□ -1.3
LIG3-201ENST00000262327 Q8NDZ9 215 aa6.9□□□□□ -1.3
LIG3-201ENST00000262327 C6orf223Q8N319 242 aa6.9□□□□□ -1.31
LIG3-201ENST00000262327 X6R8D5 127 aa6.9□□□□□ -1.31
LIG3-201ENST00000262327 NANOS2P60321 138 aaKnown RBP6.89□□□□□ -1.31
LIG3-201ENST00000262327 NDUFC2O95298 119 aa6.89□□□□□ -1.31
LIG3-201ENST00000262327 BRK1Q8WUW1 75 aa6.89□□□□□ -1.31
LIG3-201ENST00000262327 CHCHD10Q8WYQ3 142 aaPredicted RBP6.89□□□□□ -1.31
LIG3-201ENST00000262327 ORMDL1Q9P0S3 153 aa6.89□□□□□ -1.31
LIG3-201ENST00000262327 EPM2AB3EWF7 344 aa6.88□□□□□ -1.31
LIG3-201ENST00000262327 PRO0255Q9UI72 69 aa6.88□□□□□ -1.31
LIG3-201ENST00000262327 NDUFC2-KCTD14E9PQ53 114 aa6.88□□□□□ -1.31
LIG3-201ENST00000262327 SERP1Q9Y6X1 66 aa6.88□□□□□ -1.31
LIG3-201ENST00000262327 C10orf25Q5T742 122 aa6.87□□□□□ -1.31
LIG3-201ENST00000262327 Q8IZM0 81 aa6.87□□□□□ -1.31
LIG3-201ENST00000262327 FP248Q71RG6 208 aaPredicted RBP6.87□□□□□ -1.31
LIG3-201ENST00000262327 TEP1Q99973 2627 aaKnown RBP6.87□□□□□ -1.31
LIG3-201ENST00000262327 KIAA0087Q14695 138 aa6.87□□□□□ -1.31
LIG3-201ENST00000262327 C6orf99Q4VX62 202 aa6.87□□□□□ -1.31
LIG3-201ENST00000262327 Q6JHZ5 121 aa6.87□□□□□ -1.31
LIG3-201ENST00000262327 C20orf197Q8N268 126 aa6.87□□□□□ -1.31
LIG3-201ENST00000262327 REG3AQ06141 175 aa6.86□□□□□ -1.31
LIG3-201ENST00000262327 UNQ6190/PRO20217Q6UXQ8 127 aa6.86□□□□□ -1.31
LIG3-201ENST00000262327 A0A1B0GUV1 79 aa6.85□□□□□ -1.31
LIG3-201ENST00000262327 Q8N814 137 aa6.85□□□□□ -1.31
LIG3-201ENST00000262327 CELA1Q9UNI1 258 aa6.85□□□□□ -1.31
LIG3-201ENST00000262327 GHRHP01286 108 aa6.85□□□□□ -1.31
LIG3-201ENST00000262327 OBSCN-AS1Q96MR7 158 aa6.85□□□□□ -1.31
LIG3-201ENST00000262327 PKD1L1Q8TDX9 2849 aa6.85□□□□□ -1.31
LIG3-201ENST00000262327 S100A7L2Q5SY68 101 aa6.84□□□□□ -1.31
LIG3-201ENST00000262327 CD164L2Q6UWJ8 174 aa6.84□□□□□ -1.31
LIG3-201ENST00000262327 LINC00612Q8N6U2 182 aa6.84□□□□□ -1.31
LIG3-201ENST00000262327 SMIM26A0A096LP01 95 aa6.83□□□□□ -1.32
LIG3-201ENST00000262327 IGHV4-28A0A0C4DH34 117 aa6.83□□□□□ -1.32
LIG3-201ENST00000262327 DAD1P61803 113 aa6.83□□□□□ -1.32
LIG3-201ENST00000262327 LINC00474Q9P2X8 69 aa6.83□□□□□ -1.32
LIG3-201ENST00000262327 TRAV23DV6A0A075B6W5 121 aa6.82□□□□□ -1.32
LIG3-201ENST00000262327 FAM19A1Q7Z5A9 133 aa6.82□□□□□ -1.32
LIG3-201ENST00000262327 KLK12Q9UKR0 248 aa6.82□□□□□ -1.32
LIG3-201ENST00000262327 CCKP06307 115 aa6.82□□□□□ -1.32
LIG3-201ENST00000262327 XAGE1AQ9HD64 81 aa6.82□□□□□ -1.32
LIG3-201ENST00000262327 H7BZZ5 65 aa6.82□□□□□ -1.32
LIG3-201ENST00000262327 M0R2N4 97 aa6.82□□□□□ -1.32
LIG3-201ENST00000262327 LYPD5Q6UWN5 251 aa6.82□□□□□ -1.32
LIG3-201ENST00000262327 SPAG11BQ08648 103 aa6.81□□□□□ -1.32
LIG3-201ENST00000262327 ENHOQ6UWT2 76 aa6.81□□□□□ -1.32
LIG3-201ENST00000262327 LAMTOR3Q9UHA4 124 aa6.8□□□□□ -1.32
LIG3-201ENST00000262327 TMEM256-PLSCR3K7ERE1 68 aa6.79□□□□□ -1.32
LIG3-201ENST00000262327 LYRM9A8MSI8 78 aa6.78□□□□□ -1.32
LIG3-201ENST00000262327 JMJD7-PLA2G4BH0Y9G9 81 aa6.78□□□□□ -1.32
LIG3-201ENST00000262327 LINC00575Q6W349 94 aa6.78□□□□□ -1.32
LIG3-201ENST00000262327 LINC00167Q96N53 147 aa6.78□□□□□ -1.32
LIG3-201ENST00000262327 HIGD2BQ4VC39 106 aa6.77□□□□□ -1.33
LIG3-201ENST00000262327 EGFEM1PQ0D2K5 195 aa6.77□□□□□ -1.33
LIG3-201ENST00000262327 COX17Q14061 63 aa6.77□□□□□ -1.33
LIG3-201ENST00000262327 Q6ZQY7 126 aa6.77□□□□□ -1.33
LIG3-201ENST00000262327 RBM3P98179 157 aaKnown RBP6.76□□□□□ -1.33
LIG3-201ENST00000262327 TRBV10-3A0A0K0K1G6 114 aa6.76□□□□□ -1.33
LIG3-201ENST00000262327 TRBV7-6A0A0J9YX20 115 aa6.75□□□□□ -1.33
LIG3-201ENST00000262327 HAMPP81172 84 aa6.75□□□□□ -1.33
LIG3-201ENST00000262327 Q8NAQ8 132 aa6.75□□□□□ -1.33
LIG3-201ENST00000262327 SNURFQ9Y675 71 aa6.75□□□□□ -1.33
LIG3-201ENST00000262327 APOC4P55056 127 aa6.75□□□□□ -1.33
LIG3-201ENST00000262327 RMI2Q96E14 147 aa6.75□□□□□ -1.33
LIG3-201ENST00000262327 UBL5Q9BZL1 73 aa6.75□□□□□ -1.33
LIG3-201ENST00000262327 SCXQ7RTU7 201 aa6.74□□□□□ -1.33
LIG3-201ENST00000262327 C6orf48Q9UBA6 75 aa6.74□□□□□ -1.33
LIG3-201ENST00000262327 F8WEM9 126 aa6.74□□□□□ -1.33
LIG3-201ENST00000262327 OXLD1Q5BKU9 147 aa6.74□□□□□ -1.33
LIG3-201ENST00000262327 MPLKIPQ8TAP9 179 aa6.74□□□□□ -1.33
LIG3-201ENST00000262327 RETNQ9HD89 108 aa6.73□□□□□ -1.33
LIG3-201ENST00000262327 MAST4O15021 2626 aa6.73□□□□□ -1.33
LIG3-201ENST00000262327 Q6ZQT0 140 aa6.73□□□□□ -1.33
LIG3-201ENST00000262327 TENM3Q9P273 2699 aa6.73□□□□□ -1.33
LIG3-201ENST00000262327 SPART-AS1P0CW21 52 aa6.73□□□□□ -1.33
LIG3-201ENST00000262327 LELP1Q5T871 98 aa6.73□□□□□ -1.33
LIG3-201ENST00000262327 WFDC10BQ8IUB3 73 aa6.73□□□□□ -1.33
LIG3-201ENST00000262327 KRTAP10-11P60412 298 aa6.72□□□□□ -1.33
LIG3-201ENST00000262327 PMAIP1Q13794 54 aa6.72□□□□□ -1.33
LIG3-201ENST00000262327 FBN1P35555 2871 aaKnown RBP6.72□□□□□ -1.33
LIG3-201ENST00000262327 IGLV6-57P01721 117 aa6.71□□□□□ -1.33
LIG3-201ENST00000262327 IGHV4-30-4P0DP06 118 aa6.71□□□□□ -1.33
LIG3-201ENST00000262327 TRAV7A0A075B6U4 112 aa6.71□□□□□ -1.34
LIG3-201ENST00000262327 ZNF561-AS1K7EIQ3 104 aa6.71□□□□□ -1.34
LIG3-201ENST00000262327 KLKP1Q107X0 134 aa6.71□□□□□ -1.34
LIG3-201ENST00000262327 A0A0J9YWU9 116 aa6.7□□□□□ -1.34
LIG3-201ENST00000262327 FAM229BQ4G0N7 80 aa6.7□□□□□ -1.34
LIG3-201ENST00000262327 MDFIQ99750 246 aa6.7□□□□□ -1.34
LIG3-201ENST00000262327 ANK2Q01484 3957 aa6.69□□□□□ -1.34
LIG3-201ENST00000262327 Q6ZVQ6 151 aa6.69□□□□□ -1.34
LIG3-201ENST00000262327 DIRC1Q969H9 104 aa6.69□□□□□ -1.34
LIG3-201ENST00000262327 CAMK2N2Q96S95 79 aa6.69□□□□□ -1.34
LIG3-201ENST00000262327 PRR34Q9NV39 138 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms