RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 A0A087WZ39 114 aa8.62□□□□□ -1.03
HIF3A-201ENST00000244302 ACYP1P07311 99 aa8.62□□□□□ -1.03
HIF3A-201ENST00000244302 CD164L2Q6UWJ8 174 aa8.62□□□□□ -1.03
HIF3A-201ENST00000244302 A0A0U1RRA0 63 aa8.62□□□□□ -1.03
HIF3A-201ENST00000244302 TRACP01848 142 aa8.62□□□□□ -1.03
HIF3A-201ENST00000244302 MEIG1Q5JSS6 88 aa8.62□□□□□ -1.03
HIF3A-201ENST00000244302 IGKV2D-24A0A075B6R9 120 aa8.61□□□□□ -1.03
HIF3A-201ENST00000244302 NDUFV3P56181 108 aaKnown RBP8.61□□□□□ -1.03
HIF3A-201ENST00000244302 TTC32Q5I0X7 151 aa8.61□□□□□ -1.03
HIF3A-201ENST00000244302 M0R2N4 97 aa8.6□□□□□ -1.03
HIF3A-201ENST00000244302 SOSTDC1Q6X4U4 206 aa8.6□□□□□ -1.03
HIF3A-201ENST00000244302 C6orf223Q8N319 242 aa8.6□□□□□ -1.03
HIF3A-201ENST00000244302 WWC2-AS2Q96NR7 200 aa8.6□□□□□ -1.03
HIF3A-201ENST00000244302 SACSQ9NZJ4 4579 aa8.59□□□□□ -1.03
HIF3A-201ENST00000244302 TRAV13-2A0A0B4J235 113 aa8.59□□□□□ -1.03
HIF3A-201ENST00000244302 IBA57-AS1B1ANH7 110 aa8.59□□□□□ -1.03
HIF3A-201ENST00000244302 TRBV7-7A0A0K0K1E9 115 aa8.57□□□□□ -1.04
HIF3A-201ENST00000244302 COX7B2Q8TF08 81 aa8.57□□□□□ -1.04
HIF3A-201ENST00000244302 LECT2O14960 151 aa8.57□□□□□ -1.04
HIF3A-201ENST00000244302 MALP21145 153 aa8.57□□□□□ -1.04
HIF3A-201ENST00000244302 KIAA0087Q14695 138 aa8.57□□□□□ -1.04
HIF3A-201ENST00000244302 HIGD2BQ4VC39 106 aa8.57□□□□□ -1.04
HIF3A-201ENST00000244302 C1orf43Q9BWL3 253 aa8.56□□□□□ -1.04
HIF3A-201ENST00000244302 IMUPQ9GZP8 106 aa8.56□□□□□ -1.04
HIF3A-201ENST00000244302 RPL28P46779 137 aaKnown RBP8.56□□□□□ -1.04
HIF3A-201ENST00000244302 C10orf25Q5T742 122 aa8.56□□□□□ -1.04
HIF3A-201ENST00000244302 C9orf116Q5BN46 136 aaPredicted RBP8.54□□□□□ -1.04
HIF3A-201ENST00000244302 C6orf226Q5I0X4 101 aa8.54□□□□□ -1.04
HIF3A-201ENST00000244302 C15orf56Q8N910 161 aa8.54□□□□□ -1.04
HIF3A-201ENST00000244302 LY6G6CO95867 125 aa8.53□□□□□ -1.04
HIF3A-201ENST00000244302 INAFM2P0DMQ5 153 aa8.53□□□□□ -1.04
HIF3A-201ENST00000244302 UNQ6190/PRO20217Q6UXQ8 127 aa8.53□□□□□ -1.04
HIF3A-201ENST00000244302 ALMS1Q8TCU4 4167 aa8.53□□□□□ -1.04
HIF3A-201ENST00000244302 KMT2CQ8NEZ4 4911 aaKnown RBP8.53□□□□□ -1.04
HIF3A-201ENST00000244302 NBDYA0A0U1RRE5 68 aa8.53□□□□□ -1.04
HIF3A-201ENST00000244302 BAALC-AS2P0C853 105 aa8.53□□□□□ -1.04
HIF3A-201ENST00000244302 SPAG11BQ08648 103 aa8.51□□□□□ -1.05
HIF3A-201ENST00000244302 LINC00643Q86TS7 51 aa8.51□□□□□ -1.05
HIF3A-201ENST00000244302 MIR7-3HGQ8N6C7 128 aa8.51□□□□□ -1.05
HIF3A-201ENST00000244302 DNAH17Q9UFH2 4485 aa8.51□□□□□ -1.05
HIF3A-201ENST00000244302 SND1-IT1Q9HBX3 110 aa8.51□□□□□ -1.05
HIF3A-201ENST00000244302 HECTD4Q9Y4D8 3996 aa8.51□□□□□ -1.05
HIF3A-201ENST00000244302 H0YGX0 51 aa8.5□□□□□ -1.05
HIF3A-201ENST00000244302 SLPIP03973 132 aa8.5□□□□□ -1.05
HIF3A-201ENST00000244302 PFN2P35080 140 aa8.5□□□□□ -1.05
HIF3A-201ENST00000244302 SDIM1Q6ZPB5 146 aa8.5□□□□□ -1.05
HIF3A-201ENST00000244302 Q8IZM0 81 aa8.5□□□□□ -1.05
HIF3A-201ENST00000244302 FRAS1Q86XX4 4008 aa8.5□□□□□ -1.05
HIF3A-201ENST00000244302 DNAH6Q9C0G6 4158 aa8.5□□□□□ -1.05
HIF3A-201ENST00000244302 B5MCH6 92 aa8.48□□□□□ -1.05
HIF3A-201ENST00000244302 USP17L23D6RBM5 183 aa8.48□□□□□ -1.05
HIF3A-201ENST00000244302 LINC00158P58513 81 aa8.48□□□□□ -1.05
HIF3A-201ENST00000244302 LINC01561Q8N1V8 128 aa8.48□□□□□ -1.05
HIF3A-201ENST00000244302 LINC00337Q8N6G1 96 aa8.48□□□□□ -1.05
HIF3A-201ENST00000244302 FAM218AQ96MZ4 157 aa8.48□□□□□ -1.05
HIF3A-201ENST00000244302 IGKV2-28A0A075B6P5 120 aa8.48□□□□□ -1.05
HIF3A-201ENST00000244302 IGKV2D-28P01615 120 aa8.48□□□□□ -1.05
HIF3A-201ENST00000244302 DNAL4O96015 105 aa8.47□□□□□ -1.05
HIF3A-201ENST00000244302 CFAP161Q6P656 301 aa8.47□□□□□ -1.05
HIF3A-201ENST00000244302 LINC00476Q8WZB0 136 aa8.47□□□□□ -1.05
HIF3A-201ENST00000244302 C22orf24Q9Y442 160 aa8.47□□□□□ -1.05
HIF3A-201ENST00000244302 DNAH11Q96DT5 4516 aa8.47□□□□□ -1.05
HIF3A-201ENST00000244302 CCDC179H3BU77 68 aa8.47□□□□□ -1.05
HIF3A-201ENST00000244302 FUSP35637 526 aaKnown RBP eCLIP8.47□□□□□ -1.05
HIF3A-201ENST00000244302 CXCL5P42830 114 aa8.47□□□□□ -1.05
HIF3A-201ENST00000244302 Q6ZRN7 208 aaPredicted RBP8.46□□□□□ -1.06
HIF3A-201ENST00000244302 Q6ZRU5 148 aa8.46□□□□□ -1.06
HIF3A-201ENST00000244302 C6orf48Q9UBA6 75 aa8.46□□□□□ -1.06
HIF3A-201ENST00000244302 FAT2Q9NYQ8 4349 aa8.45□□□□□ -1.06
HIF3A-201ENST00000244302 ZNF561-AS1K7EIQ3 104 aa8.45□□□□□ -1.06
HIF3A-201ENST00000244302 SMIM11BQ8TCY0 68 aa8.45□□□□□ -1.06
HIF3A-201ENST00000244302 C3orf84H3BNL1 204 aa8.45□□□□□ -1.06
HIF3A-201ENST00000244302 SS18L2Q9UHA2 77 aa8.45□□□□□ -1.06
HIF3A-201ENST00000244302 PSCAO43653 123 aa8.44□□□□□ -1.06
HIF3A-201ENST00000244302 Q6ZR54 194 aa8.44□□□□□ -1.06
HIF3A-201ENST00000244302 SMCR5Q8TEV8 140 aa8.44□□□□□ -1.06
HIF3A-201ENST00000244302 CAMK2N2Q96S95 79 aa8.44□□□□□ -1.06
HIF3A-201ENST00000244302 GVQW2A0A096LPI5 108 aaPredicted RBP8.42□□□□□ -1.06
HIF3A-201ENST00000244302 FAM236AA0A1B0GUQ0 79 aa8.42□□□□□ -1.06
HIF3A-201ENST00000244302 FAM236BA0A1B0GV22 79 aa8.42□□□□□ -1.06
HIF3A-201ENST00000244302 RMI2Q96E14 147 aa8.42□□□□□ -1.06
HIF3A-201ENST00000244302 OBSCN-AS1Q96MR7 158 aa8.42□□□□□ -1.06
HIF3A-201ENST00000244302 RYR2Q92736 4967 aa8.42□□□□□ -1.06
HIF3A-201ENST00000244302 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.42□□□□□ -1.06
HIF3A-201ENST00000244302 LRCOL1A6NCL2 159 aa8.42□□□□□ -1.06
HIF3A-201ENST00000244302 DNAH5Q8TE73 4624 aa8.41□□□□□ -1.06
HIF3A-201ENST00000244302 A0A087WYN8 130 aa8.41□□□□□ -1.06
HIF3A-201ENST00000244302 A0A1B0GX51 115 aa8.41□□□□□ -1.06
HIF3A-201ENST00000244302 GAGE2AQ6NT46 116 aa8.41□□□□□ -1.06
HIF3A-201ENST00000244302 Q8NDZ9 215 aa8.41□□□□□ -1.06
HIF3A-201ENST00000244302 PRR3P79522 188 aaKnown RBP8.41□□□□□ -1.06
HIF3A-201ENST00000244302 SVIPQ8NHG7 77 aa8.4□□□□□ -1.06
HIF3A-201ENST00000244302 TMEM126AQ9H061 195 aa8.4□□□□□ -1.06
HIF3A-201ENST00000244302 XAGE1AQ9HD64 81 aa8.39□□□□□ -1.07
HIF3A-201ENST00000244302 SYCNQ0VAF6 134 aa8.39□□□□□ -1.07
HIF3A-201ENST00000244302 NDUFC2O95298 119 aa8.38□□□□□ -1.07
HIF3A-201ENST00000244302 COX17Q14061 63 aa8.38□□□□□ -1.07
HIF3A-201ENST00000244302 OR13C6PQ8NH95 151 aa8.38□□□□□ -1.07
HIF3A-201ENST00000244302 LINC00167Q96N53 147 aa8.38□□□□□ -1.07
HIF3A-201ENST00000244302 PKD1P98161 4303 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms