RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TOMM7Q9P0U1 55 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 UBR5O95071 2799 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-214ENST00000637038 A0A1B0GX51 115 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 C11orf44Q8N8P7 122 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 C11orf72Q8NBR9 251 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 ZNF625Q96I27 306 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-214ENST00000637038 LYSTQ99698 3801 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 TRBV7-7A0A0K0K1E9 115 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 PAX4O43316 350 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 LINC00242Q5T6M2 205 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 ATRQ13535 2644 aa2.86□□□□□ -1.95
SCN1A-214ENST00000637038 TRBV6-4A0A1B0GX49 114 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 SMIM1B2RUZ4 78 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 CCL24O00175 119 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 FSHBP01225 129 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 RBMY1FQ15415 496 aaKnown RBP2.85□□□□□ -1.95
SCN1A-214ENST00000637038 SS18Q15532 418 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 OR13C6PQ8NH95 151 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 SND1-IT1Q9HBX3 110 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 IBA57-AS1B1ANH7 110 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 CXCL5P42830 114 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 GAGE2AQ6NT46 116 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 SERTAD4-AS1Q5TG53 156 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 Q6ZSN1 163 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 NOP10Q9NPE3 64 aaKnown RBP2.85□□□□□ -1.95
SCN1A-214ENST00000637038 CDC42SE2Q9NRR3 84 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 ITPR3Q14573 2671 aa2.85□□□□□ -1.95
SCN1A-214ENST00000637038 RPS28P62857 69 aaKnown RBP2.85□□□□□ -1.95
SCN1A-214ENST00000637038 PDZD2O15018 2839 aa2.84□□□□□ -1.95
SCN1A-214ENST00000637038 IGKV3OR2-268A0A0C4DH90 116 aa2.84□□□□□ -1.95
SCN1A-214ENST00000637038 J3KT08 172 aa2.84□□□□□ -1.95
SCN1A-214ENST00000637038 ATOX1O00244 68 aa2.84□□□□□ -1.95
SCN1A-214ENST00000637038 RPL28P46779 137 aaKnown RBP2.84□□□□□ -1.95
SCN1A-214ENST00000637038 C9orf153Q5TBE3 101 aa2.84□□□□□ -1.95
SCN1A-214ENST00000637038 Q6ZTI0 123 aa2.84□□□□□ -1.95
SCN1A-214ENST00000637038 MAPK1IP1LQ8NDC0 245 aa2.84□□□□□ -1.95
SCN1A-214ENST00000637038 FAM236AA0A1B0GUQ0 79 aa2.84□□□□□ -1.96
SCN1A-214ENST00000637038 FAM236BA0A1B0GV22 79 aa2.84□□□□□ -1.96
SCN1A-214ENST00000637038 ODF3L2Q3SX64 289 aa2.84□□□□□ -1.96
SCN1A-214ENST00000637038 HRCT1Q6UXD1 115 aa2.84□□□□□ -1.96
SCN1A-214ENST00000637038 MIR7-3HGQ8N6C7 128 aa2.84□□□□□ -1.96
SCN1A-214ENST00000637038 WFDC9Q8NEX5 89 aa2.84□□□□□ -1.96
SCN1A-214ENST00000637038 FLNCQ14315 2725 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 H3BQ85 93 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 ORMDL1Q9P0S3 153 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 UQCRQO14949 82 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 COX6A2Q02221 97 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 C1orf158Q8N1D5 194 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 PKIGQ9Y2B9 76 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 JMJD7-PLA2G4BH0Y9G9 81 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 CASC10Q5T4H9 136 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 LINC01561Q8N1V8 128 aa2.83□□□□□ -1.96
SCN1A-214ENST00000637038 A0A096LNT2 108 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 TRBV6-8A0A0A6YYG3 113 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 ATP5EP2Q5VTU8 51 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 Q6ZSV7 163 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 C18orf65Q6ZTR6 163 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 C3orf22Q8N5N4 141 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 RETNQ9HD89 108 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.82□□□□□ -1.964e-11■■■■□ 25.4
SCN1A-214ENST00000637038 PFN2P35080 140 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 C2orf48Q96LS8 159 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 A0A087WZ39 114 aa2.82□□□□□ -1.96
SCN1A-214ENST00000637038 AKAP6Q13023 2319 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 SETD2Q9BYW2 2564 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-214ENST00000637038 FAM236DA0A1B0GTK5 79 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 PRM2P04554 102 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 FAM236CP0DP71 79 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 Q6JHZ5 121 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 SONP18583 2426 aaKnown RBP2.81□□□□□ -1.96
SCN1A-214ENST00000637038 LECT2O14960 151 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 SDIM1Q6ZPB5 146 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 SOSTDC1Q6X4U4 206 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 NTM-AS1Q6ZSK4 140 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 C5orf38Q86SI9 138 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 Q8IZM0 81 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 SMIM11BQ8TCY0 68 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 TENM4Q6N022 2769 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 WNK1Q9H4A3 2382 aa2.81□□□□□ -1.96
SCN1A-214ENST00000637038 TMEM256-PLSCR3K7ERE1 68 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 DEFB130BP0DP73 79 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 DEFB130AP0DP74 79 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 GYPEP15421 78 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 CCL18P55774 89 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 COX17Q14061 63 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 UBL5Q9BZL1 73 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 Q9HAA7 133 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 PRO0255Q9UI72 69 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 LINC00959A0A1B0GUT2 108 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 LINC00526Q96FQ7 95 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 Q9UF83 564 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 LYRM9A8MSI8 78 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 COX7CP15954 63 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 XCL1P47992 114 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 EGFEM1PQ0D2K5 195 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 C1orf195Q5TG92 126 aa2.8□□□□□ -1.96
SCN1A-214ENST00000637038 IGHV3OR16-9A0A0B4J2B5 98 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 A0A1B0GUV1 79 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 NDUFC2O95298 119 aa2.79□□□□□ -1.96
SCN1A-214ENST00000637038 IGLV1-51P01701 117 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms