RNA–Protein interactions for RNA: ENST00000636549.1

CACNA1A-227, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1A, Length 6,792 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-227ENST00000636549 ATP5EP2Q5VTU8 51 aa12.73□□□□□ -0.37
CACNA1A-227ENST00000636549 AGRNO00468 2067 aa12.73□□□□□ -0.37
CACNA1A-227ENST00000636549 FSTL3O95633 263 aa12.72□□□□□ -0.37
CACNA1A-227ENST00000636549 C1orf195Q5TG92 126 aa12.72□□□□□ -0.37
CACNA1A-227ENST00000636549 IGLV1-40P01703 118 aa12.72□□□□□ -0.37
CACNA1A-227ENST00000636549 NTM-AS1Q6ZSK4 140 aa12.72□□□□□ -0.37
CACNA1A-227ENST00000636549 SMCR5Q8TEV8 140 aa12.71□□□□□ -0.37
CACNA1A-227ENST00000636549 CSDC2Q9Y534 153 aaKnown RBP12.71□□□□□ -0.37
CACNA1A-227ENST00000636549 LIMD2Q9BT23 127 aa12.71□□□□□ -0.37
CACNA1A-227ENST00000636549 hDV103S1A0JD37 113 aa12.7□□□□□ -0.38
CACNA1A-227ENST00000636549 FHL3Q13643 280 aa12.69□□□□□ -0.38
CACNA1A-227ENST00000636549 PHF5AQ7RTV0 110 aaKnown RBP12.68□□□□□ -0.38
CACNA1A-227ENST00000636549 EML5Q05BV3 1969 aa12.68□□□□□ -0.38
CACNA1A-227ENST00000636549 C22orf24Q9Y442 160 aa12.68□□□□□ -0.38
CACNA1A-227ENST00000636549 MRPS36P82909 103 aaKnown RBP12.67□□□□□ -0.38
CACNA1A-227ENST00000636549 EGFEM1PQ0D2K5 195 aa12.66□□□□□ -0.38
CACNA1A-227ENST00000636549 TYMSOSQ8TAI1 123 aa12.66□□□□□ -0.38
CACNA1A-227ENST00000636549 P0C879 139 aa12.65□□□□□ -0.38
CACNA1A-227ENST00000636549 TRBV7-7A0A0K0K1E9 115 aa12.65□□□□□ -0.38
CACNA1A-227ENST00000636549 KLLNB2CW77 178 aa12.65□□□□□ -0.38
CACNA1A-227ENST00000636549 HIVEP3Q5T1R4 2406 aa12.65□□□□□ -0.39
CACNA1A-227ENST00000636549 C11orf1Q9H5F2 150 aa12.64□□□□□ -0.39
CACNA1A-227ENST00000636549 LINC00574Q9H8X3 128 aa12.64□□□□□ -0.39
CACNA1A-227ENST00000636549 Q96NJ1 140 aa12.64□□□□□ -0.39
CACNA1A-227ENST00000636549 LTBP2Q14767 1821 aa12.64□□□□□ -0.39
CACNA1A-227ENST00000636549 CHCHD7Q9BUK0 85 aa12.64□□□□□ -0.39
CACNA1A-227ENST00000636549 ATRXP46100 2492 aa12.64□□□□□ -0.39
CACNA1A-227ENST00000636549 IGLV1-51P01701 117 aa12.63□□□□□ -0.39
CACNA1A-227ENST00000636549 ZNF295-AS1Q8N0V1 137 aa12.63□□□□□ -0.39
CACNA1A-227ENST00000636549 SPG11Q96JI7 2443 aa12.63□□□□□ -0.39
CACNA1A-227ENST00000636549 SPINT4Q6UDR6 99 aa12.62□□□□□ -0.39
CACNA1A-227ENST00000636549 NDUFC1O43677 76 aa12.62□□□□□ -0.39
CACNA1A-227ENST00000636549 SONP18583 2426 aaKnown RBP12.61□□□□□ -0.39
CACNA1A-227ENST00000636549 BDP1A6H8Y1 2624 aa12.61□□□□□ -0.39
CACNA1A-227ENST00000636549 CSPG4Q6UVK1 2322 aa12.61□□□□□ -0.39
CACNA1A-227ENST00000636549 EIF4EBP1Q13541 118 aaPredicted RBP12.61□□□□□ -0.39
CACNA1A-227ENST00000636549 C9orf92A6NGG3 77 aa12.61□□□□□ -0.39
CACNA1A-227ENST00000636549 SMIM1B2RUZ4 78 aa12.6□□□□□ -0.39
CACNA1A-227ENST00000636549 Q8N6K4 173 aa12.6□□□□□ -0.39
CACNA1A-227ENST00000636549 ADAMTSL4-AS1Q5T5F5 129 aa12.6□□□□□ -0.39
CACNA1A-227ENST00000636549 ADAMTS20P59510 1910 aa12.6□□□□□ -0.39
CACNA1A-227ENST00000636549 RTL8CO15255 209 aa12.6□□□□□ -0.39
CACNA1A-227ENST00000636549 C1orf64Q8NEQ6 169 aa12.59□□□□□ -0.39
CACNA1A-227ENST00000636549 RPL37AP61513 92 aaKnown RBP12.59□□□□□ -0.39
CACNA1A-227ENST00000636549 Q8N3U1 123 aa12.59□□□□□ -0.39
CACNA1A-227ENST00000636549 TSPEAR-AS2P59090 65 aa12.58□□□□□ -0.39
CACNA1A-227ENST00000636549 KIAA0087Q14695 138 aa12.58□□□□□ -0.4
CACNA1A-227ENST00000636549 ATP5EP56381 51 aaPredicted RBP12.58□□□□□ -0.4
CACNA1A-227ENST00000636549 SMR3BP02814 79 aaPredicted RBP12.58□□□□□ -0.4
CACNA1A-227ENST00000636549 CRIP3Q6Q6R5 217 aa12.57□□□□□ -0.4
CACNA1A-227ENST00000636549 A0A1B0GU69 56 aa12.57□□□□□ -0.4
CACNA1A-227ENST00000636549 SMIM29Q86T20 159 aa12.57□□□□□ -0.4
CACNA1A-227ENST00000636549 COX7CP15954 63 aa12.56□□□□□ -0.4
CACNA1A-227ENST00000636549 PRO3102Q9H379 93 aa12.55□□□□□ -0.4
CACNA1A-227ENST00000636549 NHLRC4P0CG21 123 aaPredicted RBP12.55□□□□□ -0.4
CACNA1A-227ENST00000636549 SPAG11AQ6PDA7 123 aa12.55□□□□□ -0.4
CACNA1A-227ENST00000636549 POLR2KP53803 58 aaKnown RBP12.54□□□□□ -0.4
CACNA1A-227ENST00000636549 ACYP2P14621 99 aa12.54□□□□□ -0.4
CACNA1A-227ENST00000636549 APLNQ9ULZ1 77 aa12.54□□□□□ -0.4
CACNA1A-227ENST00000636549 LRP4O75096 1905 aa12.53□□□□□ -0.4
CACNA1A-227ENST00000636549 Q6JHZ5 121 aa12.53□□□□□ -0.4
CACNA1A-227ENST00000636549 A0A1W2PPR1 153 aa12.53□□□□□ -0.4
CACNA1A-227ENST00000636549 C2orf91Q6ZV80 131 aa12.51□□□□□ -0.41
CACNA1A-227ENST00000636549 LINC00315P59091 139 aa12.51□□□□□ -0.41
CACNA1A-227ENST00000636549 PTPRSQ13332 1948 aa12.51□□□□□ -0.41
CACNA1A-227ENST00000636549 NOTCH2Q04721 2471 aa12.51□□□□□ -0.41
CACNA1A-227ENST00000636549 ATP11AUNQ6ZP68 121 aa12.51□□□□□ -0.41
CACNA1A-227ENST00000636549 TRAV7A0A075B6U4 112 aa12.5□□□□□ -0.41
CACNA1A-227ENST00000636549 LINC00313P59037 77 aa12.49□□□□□ -0.41
CACNA1A-227ENST00000636549 IMUPQ9GZP8 106 aa12.49□□□□□ -0.41
CACNA1A-227ENST00000636549 C16orf95Q9H693 158 aa12.49□□□□□ -0.41
CACNA1A-227ENST00000636549 TMEM254Q8TBM7 123 aa12.48□□□□□ -0.41
CACNA1A-227ENST00000636549 NAV3Q8IVL0 2385 aa12.48□□□□□ -0.41
CACNA1A-227ENST00000636549 LINC01554Q52M75 96 aa12.48□□□□□ -0.41
CACNA1A-227ENST00000636549 IGIPA6NJ69 53 aa12.48□□□□□ -0.41
CACNA1A-227ENST00000636549 LINC00167Q96N53 147 aa12.45□□□□□ -0.42
CACNA1A-227ENST00000636549 KRTAP24-1Q3LI83 254 aa12.45□□□□□ -0.42
CACNA1A-227ENST00000636549 SSBP3-AS1Q7Z2R9 100 aa12.45□□□□□ -0.42
CACNA1A-227ENST00000636549 C6orf48Q9UBA6 75 aa12.44□□□□□ -0.42
CACNA1A-227ENST00000636549 ST20-AS1Q8NBB2 130 aa12.42□□□□□ -0.42
CACNA1A-227ENST00000636549 MUC7Q8TAX7 377 aa12.41□□□□□ -0.42
CACNA1A-227ENST00000636549 ABCA2Q9BZC7 2435 aa12.41□□□□□ -0.42
CACNA1A-227ENST00000636549 CPAMD8Q8IZJ3 1885 aa12.4□□□□□ -0.42
CACNA1A-227ENST00000636549 SMIM26A0A096LP01 95 aa12.4□□□□□ -0.43
CACNA1A-227ENST00000636549 FAM168BA1KXE4 195 aa12.39□□□□□ -0.43
CACNA1A-227ENST00000636549 CDIP1Q9H305 208 aa12.38□□□□□ -0.43
CACNA1A-227ENST00000636549 EPM2AB3EWF7 344 aa12.37□□□□□ -0.43
CACNA1A-227ENST00000636549 IGLV6-57P01721 117 aa12.37□□□□□ -0.43
CACNA1A-227ENST00000636549 LINC00846Q9NV44 126 aa12.34□□□□□ -0.43
CACNA1A-227ENST00000636549 DNAH10OSP0CZ25 163 aa12.33□□□□□ -0.44
CACNA1A-227ENST00000636549 Q6ZRP5 223 aa12.32□□□□□ -0.44
CACNA1A-227ENST00000636549 Q8N2B8 174 aa12.32□□□□□ -0.44
CACNA1A-227ENST00000636549 NBDYA0A0U1RRE5 68 aa12.32□□□□□ -0.44
CACNA1A-227ENST00000636549 DSCR10P59022 87 aa12.29□□□□□ -0.44
CACNA1A-227ENST00000636549 SPATA3Q8NHX4 192 aa12.29□□□□□ -0.44
CACNA1A-227ENST00000636549 WWC2-AS2Q96NR7 200 aa12.28□□□□□ -0.44
CACNA1A-227ENST00000636549 LINC00588Q9Y4M8 146 aa12.28□□□□□ -0.44
CACNA1A-227ENST00000636549 LINC00476Q8WZB0 136 aa12.28□□□□□ -0.44
CACNA1A-227ENST00000636549 A0A0D9SG42 100 aa12.27□□□□□ -0.44
CACNA1A-227ENST00000636549 ANAPC11Q9NYG5 84 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms