RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 SMIM6P0DI80 62 aa9.63□□□□□ -0.87
LIMS3-206ENST00000631420 LGALS3P17931 250 aaKnown RBP9.63□□□□□ -0.87
LIMS3-206ENST00000631420 FUSP35637 526 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIMS3-206ENST00000631420 PCP2Q8IVA1 136 aa9.63□□□□□ -0.87
LIMS3-206ENST00000631420 CKS1BP61024 79 aa9.63□□□□□ -0.87
LIMS3-206ENST00000631420 C14orf177Q52M58 125 aa9.63□□□□□ -0.87
LIMS3-206ENST00000631420 Q6ZRU5 148 aa9.63□□□□□ -0.87
LIMS3-206ENST00000631420 C2orf48Q96LS8 159 aa9.63□□□□□ -0.87
LIMS3-206ENST00000631420 CAMK2N2Q96S95 79 aa9.63□□□□□ -0.87
LIMS3-206ENST00000631420 NDUFA12Q9UI09 145 aa9.63□□□□□ -0.87
LIMS3-206ENST00000631420 ZNF625Q96I27 306 aaPredicted RBP9.62□□□□□ -0.87
LIMS3-206ENST00000631420 SYCNQ0VAF6 134 aa9.61□□□□□ -0.87
LIMS3-206ENST00000631420 C14orf144Q96I85 54 aa9.61□□□□□ -0.87
LIMS3-206ENST00000631420 NDUFA1O15239 70 aa9.6□□□□□ -0.87
LIMS3-206ENST00000631420 S100A12P80511 92 aa9.6□□□□□ -0.87
LIMS3-206ENST00000631420 C12orf57Q99622 126 aa9.6□□□□□ -0.87
LIMS3-206ENST00000631420 C6orf48Q9UBA6 75 aa9.6□□□□□ -0.87
LIMS3-206ENST00000631420 TP73-AS1Q9UF72 201 aa9.6□□□□□ -0.87
LIMS3-206ENST00000631420 ZNF815PA8K554 130 aa9.59□□□□□ -0.87
LIMS3-206ENST00000631420 C9orf116Q5BN46 136 aaPredicted RBP9.59□□□□□ -0.87
LIMS3-206ENST00000631420 MYMXA0A1B0GTQ4 84 aa9.58□□□□□ -0.88
LIMS3-206ENST00000631420 EREGO14944 169 aa9.58□□□□□ -0.88
LIMS3-206ENST00000631420 CXCL5P42830 114 aa9.58□□□□□ -0.88
LIMS3-206ENST00000631420 LINC00336Q6ZUF6 198 aa9.58□□□□□ -0.88
LIMS3-206ENST00000631420 LINC00518Q8N0U6 118 aa9.58□□□□□ -0.88
LIMS3-206ENST00000631420 PKD1P98161 4303 aa9.58□□□□□ -0.88
LIMS3-206ENST00000631420 KRTAP10-2P60368 255 aa9.58□□□□□ -0.88
LIMS3-206ENST00000631420 CNBPP62633 177 aaKnown RBP9.58□□□□□ -0.88
LIMS3-206ENST00000631420 CARD19Q96LW7 228 aa9.58□□□□□ -0.88
LIMS3-206ENST00000631420 F8WDY8 70 aa9.57□□□□□ -0.88
LIMS3-206ENST00000631420 COX8AP10176 69 aa9.57□□□□□ -0.88
LIMS3-206ENST00000631420 LINC01620Q4KN68 170 aa9.57□□□□□ -0.88
LIMS3-206ENST00000631420 DNAH5Q8TE73 4624 aa9.56□□□□□ -0.88
LIMS3-206ENST00000631420 A0A0J9YXY3 114 aa9.55□□□□□ -0.88
LIMS3-206ENST00000631420 A0A0U1RRA0 63 aa9.55□□□□□ -0.88
LIMS3-206ENST00000631420 BOD1L2Q8IYS8 172 aa9.55□□□□□ -0.88
LIMS3-206ENST00000631420 PRO1933Q9H354 126 aa9.55□□□□□ -0.88
LIMS3-206ENST00000631420 HECTD4Q9Y4D8 3996 aa9.55□□□□□ -0.88
LIMS3-206ENST00000631420 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.54□□□□□ -0.88
LIMS3-206ENST00000631420 TRBV30A0A0K0K1B3 111 aa9.54□□□□□ -0.88
LIMS3-206ENST00000631420 HERV-K104P63124 156 aa9.54□□□□□ -0.88
LIMS3-206ENST00000631420 IGLV5-52A0A0A0MRZ9 124 aa9.54□□□□□ -0.88
LIMS3-206ENST00000631420 SMIM13P0DJ93 91 aa9.54□□□□□ -0.88
LIMS3-206ENST00000631420 PFN2P35080 140 aa9.54□□□□□ -0.88
LIMS3-206ENST00000631420 SFTA2Q6UW10 78 aa9.54□□□□□ -0.88
LIMS3-206ENST00000631420 C9orf163Q8N9P6 203 aa9.54□□□□□ -0.88
LIMS3-206ENST00000631420 ERG28Q9UKR5 140 aa9.54□□□□□ -0.88
LIMS3-206ENST00000631420 A0A1B0GVY2 172 aa9.53□□□□□ -0.88
LIMS3-206ENST00000631420 RNF151Q2KHN1 245 aa9.53□□□□□ -0.88
LIMS3-206ENST00000631420 MEIG1Q5JSS6 88 aa9.53□□□□□ -0.88
LIMS3-206ENST00000631420 SLC25A34Q6PIV7 304 aa9.52□□□□□ -0.89
LIMS3-206ENST00000631420 SCGB1D4Q6XE38 83 aa9.52□□□□□ -0.89
LIMS3-206ENST00000631420 DLEU1O43261 78 aa9.51□□□□□ -0.89
LIMS3-206ENST00000631420 LINC00158P58513 81 aa9.51□□□□□ -0.89
LIMS3-206ENST00000631420 ADAMTSL4-AS1Q5T5F5 129 aa9.51□□□□□ -0.89
LIMS3-206ENST00000631420 PGPEP1Q9NXJ5 209 aa9.51□□□□□ -0.89
LIMS3-206ENST00000631420 DAND5Q8N907 189 aa9.5□□□□□ -0.89
LIMS3-206ENST00000631420 LITAFQ99732 161 aa9.5□□□□□ -0.89
LIMS3-206ENST00000631420 SDIM1Q6ZPB5 146 aa9.5□□□□□ -0.89
LIMS3-206ENST00000631420 Q6ZRP5 223 aa9.5□□□□□ -0.89
LIMS3-206ENST00000631420 NDUFC2-KCTD14E9PQ53 114 aa9.49□□□□□ -0.89
LIMS3-206ENST00000631420 TLX1NBP0CAT3 122 aa9.49□□□□□ -0.89
LIMS3-206ENST00000631420 RPL18AQ02543 176 aaKnown RBP9.48□□□□□ -0.89
LIMS3-206ENST00000631420 GAGE2BQ13066 116 aa9.48□□□□□ -0.89
LIMS3-206ENST00000631420 COX17Q14061 63 aa9.48□□□□□ -0.89
LIMS3-206ENST00000631420 GAGE2EQ4V326 116 aa9.48□□□□□ -0.89
LIMS3-206ENST00000631420 C2orf91Q6ZV80 131 aa9.48□□□□□ -0.89
LIMS3-206ENST00000631420 MIR7-3HGQ8N6C7 128 aa9.48□□□□□ -0.89
LIMS3-206ENST00000631420 UQCR10Q9UDW1 63 aa9.48□□□□□ -0.89
LIMS3-206ENST00000631420 GAGE2DQ9UEU5 116 aa9.48□□□□□ -0.89
LIMS3-206ENST00000631420 LOC107984640A0A0U1RRK4 108 aa9.47□□□□□ -0.89
LIMS3-206ENST00000631420 LINC00587B1AMM8 73 aa9.47□□□□□ -0.89
LIMS3-206ENST00000631420 CIRBPQ14011 172 aaKnown RBP9.47□□□□□ -0.89
LIMS3-206ENST00000631420 TIMM17BO60830 172 aa9.46□□□□□ -0.89
LIMS3-206ENST00000631420 MIEN1Q9BRT3 115 aa9.46□□□□□ -0.89
LIMS3-206ENST00000631420 XAGE1AQ9HD64 81 aa9.46□□□□□ -0.89
LIMS3-206ENST00000631420 DYNC1H1Q14204 4646 aaKnown RBP9.46□□□□□ -0.89
LIMS3-206ENST00000631420 A0A096LNI7 61 aa9.46□□□□□ -0.9
LIMS3-206ENST00000631420 EIF4EBP3O60516 100 aaPredicted RBP9.46□□□□□ -0.9
LIMS3-206ENST00000631420 GCSHP23434 173 aa9.46□□□□□ -0.9
LIMS3-206ENST00000631420 NPC2P61916 151 aa9.46□□□□□ -0.9
LIMS3-206ENST00000631420 DNAH8Q96JB1 4490 aa9.45□□□□□ -0.9
LIMS3-206ENST00000631420 IGKV2-24A0A0C4DH68 120 aa9.45□□□□□ -0.9
LIMS3-206ENST00000631420 PANO1I0J062 215 aa9.45□□□□□ -0.9
LIMS3-206ENST00000631420 CHTF8P0CG12 524 aa9.45□□□□□ -0.9
LIMS3-206ENST00000631420 SND1-IT1Q9HBX3 110 aa9.45□□□□□ -0.9
LIMS3-206ENST00000631420 TMEM238C9JI98 176 aa9.44□□□□□ -0.9
LIMS3-206ENST00000631420 PTTG1IPP53801 180 aa9.44□□□□□ -0.9
LIMS3-206ENST00000631420 KRTAP10-1P60331 282 aa9.44□□□□□ -0.9
LIMS3-206ENST00000631420 C9orf129Q5T035 196 aaKnown RBP9.44□□□□□ -0.9
LIMS3-206ENST00000631420 HIGD1BQ9P298 99 aa9.44□□□□□ -0.9
LIMS3-206ENST00000631420 PKHD1P08F94 4074 aa9.44□□□□□ -0.9
LIMS3-206ENST00000631420 LRP1BQ9NZR2 4599 aa9.43□□□□□ -0.9
LIMS3-206ENST00000631420 C16orf90A8MZG2 172 aa9.43□□□□□ -0.9
LIMS3-206ENST00000631420 SOSTDC1Q6X4U4 206 aa9.43□□□□□ -0.9
LIMS3-206ENST00000631420 TSTD3H0UI37 97 aa9.42□□□□□ -0.9
LIMS3-206ENST00000631420 SRSF9Q13242 221 aaKnown RBP eCLIP9.42□□□□□ -0.9
LIMS3-206ENST00000631420 SPANXDQ9BXN6 97 aa9.42□□□□□ -0.9
LIMS3-206ENST00000631420 SPANXB1Q9NS25 103 aaPredicted RBP9.42□□□□□ -0.9
LIMS3-206ENST00000631420 SPANXCQ9NY87 97 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms