RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PFN2P35080 140 aa8.82□□□□□ -1
LINC00540-203ENST00000631321 XCL1P47992 114 aa8.82□□□□□ -1
LINC00540-203ENST00000631321 ITPR2Q14571 2701 aa8.82□□□□□ -1
LINC00540-203ENST00000631321 J3QKU1 62 aa8.82□□□□□ -1
LINC00540-203ENST00000631321 Q9HAA7 133 aa8.82□□□□□ -1
LINC00540-203ENST00000631321 A0A087WYN8 130 aa8.81□□□□□ -1
LINC00540-203ENST00000631321 IMUPQ9GZP8 106 aa8.81□□□□□ -1
LINC00540-203ENST00000631321 PAX4O43316 350 aa8.81□□□□□ -1
LINC00540-203ENST00000631321 UNC79Q9P2D8 2635 aa8.81□□□□□ -1
LINC00540-203ENST00000631321 LINC00643Q86TS7 51 aa8.8□□□□□ -1
LINC00540-203ENST00000631321 SMCR5Q8TEV8 140 aa8.8□□□□□ -1
LINC00540-203ENST00000631321 SMR3AQ99954 134 aa8.8□□□□□ -1
LINC00540-203ENST00000631321 C9orf66Q5T8R8 295 aa8.8□□□□□ -1
LINC00540-203ENST00000631321 DNAL4O96015 105 aa8.79□□□□□ -1
LINC00540-203ENST00000631321 KIAA0087Q14695 138 aa8.79□□□□□ -1
LINC00540-203ENST00000631321 CD164L2Q6UWJ8 174 aa8.79□□□□□ -1
LINC00540-203ENST00000631321 OBSCN-AS1Q96MR7 158 aa8.79□□□□□ -1
LINC00540-203ENST00000631321 HIVEP2P31629 2446 aa8.79□□□□□ -1
LINC00540-203ENST00000631321 C11orf68Q9H3H3 251 aaKnown RBP8.78□□□□□ -1
LINC00540-203ENST00000631321 FN1P02751 2386 aaKnown RBP8.77□□□□□ -1.01
LINC00540-203ENST00000631321 A0A096LPF7 62 aa8.77□□□□□ -1.01
LINC00540-203ENST00000631321 CLPSL2Q6UWE3 100 aa8.77□□□□□ -1.01
LINC00540-203ENST00000631321 SPATA3Q8NHX4 192 aa8.77□□□□□ -1.01
LINC00540-203ENST00000631321 CXCL5P42830 114 aa8.76□□□□□ -1.01
LINC00540-203ENST00000631321 COX17Q14061 63 aa8.76□□□□□ -1.01
LINC00540-203ENST00000631321 LINC00269Q8N2A0 174 aa8.76□□□□□ -1.01
LINC00540-203ENST00000631321 OR13C6PQ8NH95 151 aa8.76□□□□□ -1.01
LINC00540-203ENST00000631321 IGHV4-28A0A0C4DH34 117 aa8.75□□□□□ -1.01
LINC00540-203ENST00000631321 NDUFC2O95298 119 aa8.75□□□□□ -1.01
LINC00540-203ENST00000631321 CHCHD10Q8WYQ3 142 aaPredicted RBP8.75□□□□□ -1.01
LINC00540-203ENST00000631321 CCDC179H3BU77 68 aa8.75□□□□□ -1.01
LINC00540-203ENST00000631321 LECT2O14960 151 aa8.75□□□□□ -1.01
LINC00540-203ENST00000631321 ATP5G1P05496 136 aa8.75□□□□□ -1.01
LINC00540-203ENST00000631321 APOC4P55056 127 aa8.75□□□□□ -1.01
LINC00540-203ENST00000631321 DEFB135Q30KP9 77 aa8.75□□□□□ -1.01
LINC00540-203ENST00000631321 LINC00167Q96N53 147 aa8.74□□□□□ -1.01
LINC00540-203ENST00000631321 NANOS2P60321 138 aaKnown RBP8.74□□□□□ -1.01
LINC00540-203ENST00000631321 GAGE2AQ6NT46 116 aa8.74□□□□□ -1.01
LINC00540-203ENST00000631321 HELZ2Q9BYK8 2649 aaKnown RBP8.74□□□□□ -1.01
LINC00540-203ENST00000631321 A0A1B0GX51 115 aa8.73□□□□□ -1.01
LINC00540-203ENST00000631321 DAD1P61803 113 aa8.73□□□□□ -1.01
LINC00540-203ENST00000631321 REG3AQ06141 175 aa8.73□□□□□ -1.01
LINC00540-203ENST00000631321 C9orf129Q5T035 196 aaKnown RBP8.73□□□□□ -1.01
LINC00540-203ENST00000631321 CFAP161Q6P656 301 aa8.73□□□□□ -1.01
LINC00540-203ENST00000631321 GCN1Q92616 2671 aaKnown RBP8.73□□□□□ -1.01
LINC00540-203ENST00000631321 B5MCH6 92 aa8.73□□□□□ -1.01
LINC00540-203ENST00000631321 Q8NAQ8 132 aa8.73□□□□□ -1.01
LINC00540-203ENST00000631321 DEFB4AO15263 64 aa8.72□□□□□ -1.01
LINC00540-203ENST00000631321 ANGP03950 147 aaKnown RBP8.72□□□□□ -1.01
LINC00540-203ENST00000631321 MIFP14174 115 aa8.72□□□□□ -1.01
LINC00540-203ENST00000631321 Q8N3U1 123 aa8.72□□□□□ -1.01
LINC00540-203ENST00000631321 KLK5Q9Y337 293 aaPredicted RBP8.72□□□□□ -1.01
LINC00540-203ENST00000631321 FASNP49327 2511 aaKnown RBP8.71□□□□□ -1.01
LINC00540-203ENST00000631321 C14orf132Q9NPU4 83 aa8.71□□□□□ -1.02
LINC00540-203ENST00000631321 ORMDL1Q9P0S3 153 aa8.71□□□□□ -1.02
LINC00540-203ENST00000631321 CELA1Q9UNI1 258 aa8.71□□□□□ -1.02
LINC00540-203ENST00000631321 NBEAL2Q6ZNJ1 2754 aa8.71□□□□□ -1.02
LINC00540-203ENST00000631321 VWFP04275 2813 aa8.7□□□□□ -1.02
LINC00540-203ENST00000631321 FAM236AA0A1B0GUQ0 79 aa8.7□□□□□ -1.02
LINC00540-203ENST00000631321 FAM236BA0A1B0GV22 79 aa8.7□□□□□ -1.02
LINC00540-203ENST00000631321 TMEM126AQ9H061 195 aa8.7□□□□□ -1.02
LINC00540-203ENST00000631321 IGLV10-54A0A075B6I4 117 aa8.69□□□□□ -1.02
LINC00540-203ENST00000631321 SLPIP03973 132 aa8.69□□□□□ -1.02
LINC00540-203ENST00000631321 PRR3P79522 188 aaKnown RBP8.69□□□□□ -1.02
LINC00540-203ENST00000631321 LELP1Q5T871 98 aa8.69□□□□□ -1.02
LINC00540-203ENST00000631321 MUC7Q8TAX7 377 aa8.69□□□□□ -1.02
LINC00540-203ENST00000631321 KMT2BQ9UMN6 2715 aaPredicted RBP8.68□□□□□ -1.02
LINC00540-203ENST00000631321 SS18L2Q9UHA2 77 aa8.68□□□□□ -1.02
LINC00540-203ENST00000631321 NCR3O14931 201 aa8.68□□□□□ -1.02
LINC00540-203ENST00000631321 SPART-AS1P0CW21 52 aa8.68□□□□□ -1.02
LINC00540-203ENST00000631321 C9orf116Q5BN46 136 aaPredicted RBP8.68□□□□□ -1.02
LINC00540-203ENST00000631321 Q8N814 137 aa8.68□□□□□ -1.02
LINC00540-203ENST00000631321 INAFM1C9JVW0 142 aa8.67□□□□□ -1.02
LINC00540-203ENST00000631321 PRR34Q9NV39 138 aa8.67□□□□□ -1.02
LINC00540-203ENST00000631321 Q8NDZ9 215 aa8.66□□□□□ -1.02
LINC00540-203ENST00000631321 A0A0J9YWU9 116 aa8.66□□□□□ -1.02
LINC00540-203ENST00000631321 WIPF1O43516 503 aa8.66□□□□□ -1.02
LINC00540-203ENST00000631321 IGHV4-30-4P0DP06 118 aa8.66□□□□□ -1.02
LINC00540-203ENST00000631321 WFDC9Q8NEX5 89 aa8.65□□□□□ -1.02
LINC00540-203ENST00000631321 LINC00846Q9NV44 126 aa8.65□□□□□ -1.02
LINC00540-203ENST00000631321 HIST1H4AP62805 103 aaKnown RBP8.65□□□□□ -1.02
LINC00540-203ENST00000631321 SPAG11BQ08648 103 aa8.65□□□□□ -1.02
LINC00540-203ENST00000631321 Q6JHZ5 121 aa8.65□□□□□ -1.02
LINC00540-203ENST00000631321 C10orf25Q5T742 122 aa8.64□□□□□ -1.03
LINC00540-203ENST00000631321 JMJD7-PLA2G4BH0Y9G9 81 aa8.64□□□□□ -1.03
LINC00540-203ENST00000631321 TMEM256-PLSCR3K7ERE1 68 aa8.64□□□□□ -1.03
LINC00540-203ENST00000631321 CCKP06307 115 aa8.64□□□□□ -1.03
LINC00540-203ENST00000631321 UNQ6190/PRO20217Q6UXQ8 127 aa8.64□□□□□ -1.03
LINC00540-203ENST00000631321 GVQW2A0A096LPI5 108 aaPredicted RBP8.63□□□□□ -1.03
LINC00540-203ENST00000631321 C6orf223Q8N319 242 aa8.63□□□□□ -1.03
LINC00540-203ENST00000631321 CYSRT1A8MQ03 144 aa8.62□□□□□ -1.03
LINC00540-203ENST00000631321 ENHOQ6UWT2 76 aa8.62□□□□□ -1.03
LINC00540-203ENST00000631321 HTN3P15516 51 aa8.62□□□□□ -1.03
LINC00540-203ENST00000631321 C6orf99Q4VX62 202 aa8.62□□□□□ -1.03
LINC00540-203ENST00000631321 LINC00575Q6W349 94 aa8.62□□□□□ -1.03
LINC00540-203ENST00000631321 OTOGQ6ZRI0 2925 aa8.62□□□□□ -1.03
LINC00540-203ENST00000631321 NOTCH2Q04721 2471 aa8.62□□□□□ -1.03
LINC00540-203ENST00000631321 NSD1Q96L73 2696 aaPredicted RBP8.62□□□□□ -1.03
LINC00540-203ENST00000631321 KLK12Q9UKR0 248 aa8.61□□□□□ -1.03
LINC00540-203ENST00000631321 IGLV6-57P01721 117 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms