RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 Q6ZUT4 128 aa2.53□□□□□ -2
SNCA-213ENST00000618500 DAND5Q8N907 189 aa2.53□□□□□ -2
SNCA-213ENST00000618500 C20orf78Q9BR46 151 aa2.53□□□□□ -2
SNCA-213ENST00000618500 ZNF706Q9Y5V0 76 aaPredicted RBP2.53□□□□□ -2
SNCA-213ENST00000618500 ALG5Q9Y673 324 aa2.53□□□□□ -2
SNCA-213ENST00000618500 TGIF2-C20orf24A0A0A6YYL0 155 aa2.53□□□□□ -2
SNCA-213ENST00000618500 GNG4P50150 75 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 ZNF345Q14585 488 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 LINC00483Q53H64 154 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 C5orf38Q86SI9 138 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 LINC01551Q86U37 167 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 Q8N377 158 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 NRACQ8N912 160 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 TRBV24-1A0A075B6N3 115 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 SLC25A20O43772 301 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 GAGE2EQ4V326 116 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 KCNRGQ8N5I3 272 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 GAGE2DQ9UEU5 116 aa2.52□□□□□ -2.01
SNCA-213ENST00000618500 PNRC1Q12796 327 aaPredicted RBP2.51□□□□□ -2.01
SNCA-213ENST00000618500 LINC00167Q96N53 147 aa2.51□□□□□ -2.01
SNCA-213ENST00000618500 RAB4AP20338 218 aa2.51□□□□□ -2.01
SNCA-213ENST00000618500 FCER1GP30273 86 aa2.51□□□□□ -2.01
SNCA-213ENST00000618500 UBE2AP49459 152 aa2.51□□□□□ -2.01
SNCA-213ENST00000618500 Q6ZN92 141 aa2.51□□□□□ -2.01
SNCA-213ENST00000618500 SPRR4Q96PI1 79 aa2.51□□□□□ -2.01
SNCA-213ENST00000618500 TPPP3Q9BW30 176 aa2.51□□□□□ -2.01
SNCA-213ENST00000618500 LINC00846Q9NV44 126 aa2.51□□□□□ -2.01
SNCA-213ENST00000618500 TRAV13-1A0A0B4J241 112 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 HSBP1L1C9JCN9 74 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 G0S2P27469 103 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.5□□□□□ -2.01
SNCA-213ENST00000618500 RNASE7Q9H1E1 156 aaKnown RBP2.5□□□□□ -2.01
SNCA-213ENST00000618500 A0A1B0GW15 77 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 LINC00862A6NCI5 91 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 A8MWL6 223 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 F8VRH5 84 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 BORCS7Q96B45 105 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 VCX2Q9H322 139 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 CBY1Q9Y3M2 126 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 TRBV20OR9-2A0A075B6H5 130 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 DEFA1P59665 94 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 DEFA3P59666 94 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 KRTAP6-3Q3LI67 103 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 C3orf22Q8N5N4 141 aa2.5□□□□□ -2.01
SNCA-213ENST00000618500 IFITM10A6NMD0 228 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 ATP6V1G1O75348 118 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 VPREB1P12018 145 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 SSTP61278 116 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 UQCC3Q6UW78 93 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 SSBP3-AS1Q7Z2R9 100 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 PLEKHB2Q96CS7 222 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 SEC11AP67812 179 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 AMN1Q8IY45 258 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 SFT2D1Q8WV19 159 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 AMELXQ99217 191 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 PAM16Q9Y3D7 125 aa2.49□□□□□ -2.01
SNCA-213ENST00000618500 A0A1B0GUT8 65 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 K7EMI3 77 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 K7EN84 100 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 IFITM3Q01628 133 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 C5orf52A6NGY3 159 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 PRSS2P07478 247 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 Q8NBF4 154 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 FAM213BQ8TBF2 198 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 FSIP2Q5CZC0 6907 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 USH2AO75445 5202 aa2.48□□□□□ -2.01
SNCA-213ENST00000618500 IGLV4-3A0A075B6K6 122 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 RIGQ13278 110 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 TMEM141Q96I45 108 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 C2orf88Q9BSF0 95 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 SMIM2Q9BVW6 85 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 ANAPC11Q9NYG5 84 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 IGLV5-45A0A087WSX0 123 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 PCP4L1A6NKN8 68 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 HMSDA8MTL9 139 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 TMEM250H0YL14 139 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 M0R378 163 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 GATCO43716 136 aaKnown RBP2.47□□□□□ -2.01
SNCA-213ENST00000618500 CEBPGP53567 150 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 CKS1BP61024 79 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 PDZD11Q5EBL8 140 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 EIF5A2Q9GZV4 153 aaKnown RBP2.47□□□□□ -2.01
SNCA-213ENST00000618500 TMEM126AQ9H061 195 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 FCGBPQ9Y6R7 5405 aaPredicted RBP2.47□□□□□ -2.01
SNCA-213ENST00000618500 PPBPP02775 128 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 IFI27P40305 119 aaPredicted RBP2.47□□□□□ -2.01
SNCA-213ENST00000618500 HERVK_113P63121 156 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 UBE2V1Q13404 147 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 C2orf82Q6UX34 121 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 OSTCQ9NRP0 149 aa2.47□□□□□ -2.01
SNCA-213ENST00000618500 SPRR1AP35321 89 aa2.46□□□□□ -2.02
SNCA-213ENST00000618500 FAM104BQ5XKR9 115 aa2.46□□□□□ -2.02
SNCA-213ENST00000618500 NKAPP1Q8N9T2 125 aa2.46□□□□□ -2.02
SNCA-213ENST00000618500 LAMTOR2Q9Y2Q5 125 aa2.46□□□□□ -2.02
SNCA-213ENST00000618500 SNRPEP62304 92 aaKnown RBP2.46□□□□□ -2.02
SNCA-213ENST00000618500 COX17Q14061 63 aa2.46□□□□□ -2.02
SNCA-213ENST00000618500 Q5BKY6 102 aa2.46□□□□□ -2.02
SNCA-213ENST00000618500 RNASE13Q5GAN3 156 aaKnown RBP2.46□□□□□ -2.02
SNCA-213ENST00000618500 SFTA2Q6UW10 78 aa2.46□□□□□ -2.02
SNCA-213ENST00000618500 TEX43Q6ZNM6 134 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms