RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SNURFQ9Y675 71 aa10.04□□□□□ -0.8
CPSF1-212ENST00000616140 MAST4O15021 2626 aa10.04□□□□□ -0.8
CPSF1-212ENST00000616140 RPL37AP8A6NKH3 93 aa10.03□□□□□ -0.8
CPSF1-212ENST00000616140 RPL28P46779 137 aaKnown RBP10.03□□□□□ -0.8
CPSF1-212ENST00000616140 CSDC2Q9Y534 153 aaKnown RBP10.03□□□□□ -0.8
CPSF1-212ENST00000616140 WFDC10BQ8IUB3 73 aa10.03□□□□□ -0.8
CPSF1-212ENST00000616140 PPDPFQ9H3Y8 114 aa10.03□□□□□ -0.8
CPSF1-212ENST00000616140 KIF25-AS1Q9Y6Z4 181 aa10.03□□□□□ -0.8
CPSF1-212ENST00000616140 PTPRBP23467 1997 aa10.03□□□□□ -0.8
CPSF1-212ENST00000616140 BEAN1Q3B7T3 259 aa10.02□□□□□ -0.8
CPSF1-212ENST00000616140 FAM19A3Q7Z5A8 133 aa10.02□□□□□ -0.8
CPSF1-212ENST00000616140 HECTD1Q9ULT8 2610 aa10.02□□□□□ -0.81
CPSF1-212ENST00000616140 FHL2Q14192 279 aa10.01□□□□□ -0.81
CPSF1-212ENST00000616140 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.01□□□□□ -0.81
CPSF1-212ENST00000616140 NANOS2P60321 138 aaKnown RBP10□□□□□ -0.81
CPSF1-212ENST00000616140 IL17DQ8TAD2 202 aa10□□□□□ -0.81
CPSF1-212ENST00000616140 LRCOL1A6NCL2 159 aa10□□□□□ -0.81
CPSF1-212ENST00000616140 DHRS4-AS1Q9P1J3 65 aa10□□□□□ -0.81
CPSF1-212ENST00000616140 WFDC13Q8IUB5 93 aa10□□□□□ -0.81
CPSF1-212ENST00000616140 MUC7Q8TAX7 377 aa10□□□□□ -0.81
CPSF1-212ENST00000616140 A0A087WVE0 104 aa9.99□□□□□ -0.81
CPSF1-212ENST00000616140 Q6Q795 121 aa9.99□□□□□ -0.81
CPSF1-212ENST00000616140 Q6JHZ5 121 aa9.99□□□□□ -0.81
CPSF1-212ENST00000616140 TRBV10-3A0A0K0K1G6 114 aa9.99□□□□□ -0.81
CPSF1-212ENST00000616140 A0A087WYN8 130 aa9.99□□□□□ -0.81
CPSF1-212ENST00000616140 Q8N814 137 aa9.98□□□□□ -0.81
CPSF1-212ENST00000616140 CHD7Q9P2D1 2997 aa9.97□□□□□ -0.81
CPSF1-212ENST00000616140 A0A0J9YWU9 116 aa9.97□□□□□ -0.81
CPSF1-212ENST00000616140 PLA2G2AP14555 144 aa9.97□□□□□ -0.81
CPSF1-212ENST00000616140 PRR4Q16378 134 aa9.97□□□□□ -0.81
CPSF1-212ENST00000616140 RANBP2P49792 3224 aaKnown RBP9.97□□□□□ -0.81
CPSF1-212ENST00000616140 EGFEM1PQ0D2K5 195 aa9.97□□□□□ -0.81
CPSF1-212ENST00000616140 LINC00315P59091 139 aa9.96□□□□□ -0.82
CPSF1-212ENST00000616140 RETNQ9HD89 108 aa9.96□□□□□ -0.82
CPSF1-212ENST00000616140 BRCA2P51587 3418 aa9.95□□□□□ -0.82
CPSF1-212ENST00000616140 SPTSSBQ8NFR3 76 aa9.95□□□□□ -0.82
CPSF1-212ENST00000616140 C5orf42Q9H799 3197 aa9.95□□□□□ -0.82
CPSF1-212ENST00000616140 NDUFC1O43677 76 aa9.94□□□□□ -0.82
CPSF1-212ENST00000616140 SPINK6Q6UWN8 80 aa9.94□□□□□ -0.82
CPSF1-212ENST00000616140 LOC107984640A0A0U1RRK4 108 aa9.94□□□□□ -0.82
CPSF1-212ENST00000616140 NDUFC2-KCTD14E9PQ53 114 aa9.93□□□□□ -0.82
CPSF1-212ENST00000616140 M0R2N4 97 aa9.93□□□□□ -0.82
CPSF1-212ENST00000616140 Q6ZTC4 211 aa9.93□□□□□ -0.82
CPSF1-212ENST00000616140 SETXQ7Z333 2677 aaKnown RBP9.93□□□□□ -0.82
CPSF1-212ENST00000616140 CELA1Q9UNI1 258 aa9.93□□□□□ -0.82
CPSF1-212ENST00000616140 LINC00337Q8N6G1 96 aa9.92□□□□□ -0.82
CPSF1-212ENST00000616140 A0A0C4DFX4 3053 aa9.92□□□□□ -0.82
CPSF1-212ENST00000616140 C6orf223Q8N319 242 aa9.92□□□□□ -0.82
CPSF1-212ENST00000616140 A0A1B0GUV1 79 aa9.92□□□□□ -0.82
CPSF1-212ENST00000616140 C11orf72Q8NBR9 251 aa9.91□□□□□ -0.82
CPSF1-212ENST00000616140 MKI67P46013 3256 aaKnown RBP9.91□□□□□ -0.82
CPSF1-212ENST00000616140 A8MTW9 85 aa9.9□□□□□ -0.82
CPSF1-212ENST00000616140 LAMA2P24043 3122 aaKnown RBP9.9□□□□□ -0.83
CPSF1-212ENST00000616140 A0A0U1RQV1 116 aa9.9□□□□□ -0.83
CPSF1-212ENST00000616140 LINC01546A6NGU7 62 aa9.89□□□□□ -0.83
CPSF1-212ENST00000616140 Q9UF83 564 aa9.89□□□□□ -0.83
CPSF1-212ENST00000616140 C1orf137Q5JT78 98 aa9.88□□□□□ -0.83
CPSF1-212ENST00000616140 HRCT1Q6UXD1 115 aa9.88□□□□□ -0.83
CPSF1-212ENST00000616140 CDIP1Q9H305 208 aa9.88□□□□□ -0.83
CPSF1-212ENST00000616140 IGLV5-39A0A0G2JS06 123 aa9.87□□□□□ -0.83
CPSF1-212ENST00000616140 LINC00846Q9NV44 126 aa9.87□□□□□ -0.83
CPSF1-212ENST00000616140 CASC2Q6XLA1 102 aa9.87□□□□□ -0.83
CPSF1-212ENST00000616140 Q8N3U1 123 aa9.87□□□□□ -0.83
CPSF1-212ENST00000616140 TRAV7A0A075B6U4 112 aa9.87□□□□□ -0.83
CPSF1-212ENST00000616140 IGHV3OR16-9A0A0B4J2B5 98 aa9.87□□□□□ -0.83
CPSF1-212ENST00000616140 FAM19A4Q96LR4 140 aa9.87□□□□□ -0.83
CPSF1-212ENST00000616140 C16orf95Q9H693 158 aa9.87□□□□□ -0.83
CPSF1-212ENST00000616140 ATP5EP56381 51 aaPredicted RBP9.86□□□□□ -0.83
CPSF1-212ENST00000616140 FAM30AQ9NZY2 134 aa9.86□□□□□ -0.83
CPSF1-212ENST00000616140 CFAP54Q96N23 3096 aa9.86□□□□□ -0.83
CPSF1-212ENST00000616140 IGLV9-49A0A0B4J1Y8 123 aa9.86□□□□□ -0.83
CPSF1-212ENST00000616140 M0QXV9 152 aa9.86□□□□□ -0.83
CPSF1-212ENST00000616140 Q8N2B8 174 aa9.86□□□□□ -0.83
CPSF1-212ENST00000616140 PLAC8L1A1L4L8 177 aa9.85□□□□□ -0.83
CPSF1-212ENST00000616140 SEC61GP60059 68 aa9.85□□□□□ -0.83
CPSF1-212ENST00000616140 SMCPP49901 116 aaPredicted RBP9.85□□□□□ -0.83
CPSF1-212ENST00000616140 AKAP13Q12802 2813 aa9.84□□□□□ -0.83
CPSF1-212ENST00000616140 C7orf33Q8WU49 177 aa9.83□□□□□ -0.84
CPSF1-212ENST00000616140 LYPD5Q6UWN5 251 aa9.83□□□□□ -0.84
CPSF1-212ENST00000616140 LINC00575Q6W349 94 aa9.82□□□□□ -0.84
CPSF1-212ENST00000616140 LAMA3Q16787 3333 aa9.82□□□□□ -0.84
CPSF1-212ENST00000616140 Q8N9L7 120 aa9.81□□□□□ -0.84
CPSF1-212ENST00000616140 PRO0461Q9UI25 63 aa9.8□□□□□ -0.84
CPSF1-212ENST00000616140 Q6ZRU5 148 aa9.8□□□□□ -0.84
CPSF1-212ENST00000616140 ZNF706Q9Y5V0 76 aaPredicted RBP9.8□□□□□ -0.84
CPSF1-212ENST00000616140 Q6ZVQ6 151 aa9.8□□□□□ -0.84
CPSF1-212ENST00000616140 LINC00208Q96KT6 92 aa9.8□□□□□ -0.84
CPSF1-212ENST00000616140 SMIM26A0A096LP01 95 aa9.79□□□□□ -0.84
CPSF1-212ENST00000616140 LINC00474Q9P2X8 69 aa9.78□□□□□ -0.84
CPSF1-212ENST00000616140 REG3GQ6UW15 175 aa9.78□□□□□ -0.84
CPSF1-212ENST00000616140 V9GYY9 64 aa9.78□□□□□ -0.84
CPSF1-212ENST00000616140 SOSTDC1Q6X4U4 206 aa9.78□□□□□ -0.84
CPSF1-212ENST00000616140 C10orf25Q5T742 122 aa9.77□□□□□ -0.85
CPSF1-212ENST00000616140 LINC01561Q8N1V8 128 aa9.77□□□□□ -0.85
CPSF1-212ENST00000616140 C2orf48Q96LS8 159 aa9.77□□□□□ -0.85
CPSF1-212ENST00000616140 FLNAP21333 2647 aaKnown RBP9.76□□□□□ -0.85
CPSF1-212ENST00000616140 A0A087WSZ3 146 aa9.76□□□□□ -0.85
CPSF1-212ENST00000616140 LY6G6CO95867 125 aa9.76□□□□□ -0.85
CPSF1-212ENST00000616140 LINC01547P58512 204 aaPredicted RBP9.76□□□□□ -0.85
CPSF1-212ENST00000616140 IGLV5-45A0A087WSX0 123 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms