RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 RHEBQ15382 184 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 TMEM141Q96I45 108 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 C6orf48Q9UBA6 75 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 IGHV3-64A0A075B6Q5 118 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 ZNF561-AS1K7EIQ3 104 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 SYCNQ0VAF6 134 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 C14orf177Q52M58 125 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 Q6ZRP5 223 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 AMELXQ99217 191 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 TRAPPC1Q9Y5R8 145 aa3.57□□□□□ -1.84
CPNE3-208ENST00000614678 CARD19Q96LW7 228 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 CAMK2N2Q96S95 79 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 TIMM21Q9BVV7 248 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 SPANXA1Q9NS26 97 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 CYSLTR1Q9Y271 337 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 IGHV1-58A0A0C4DH39 117 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 LINC00310P59036 64 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 FAM19A2Q8N3H0 131 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 TOMM7Q9P0U1 55 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 MRPS36P82909 103 aaKnown RBP3.56□□□□□ -1.84
CPNE3-208ENST00000614678 RPL18AQ02543 176 aaKnown RBP3.56□□□□□ -1.84
CPNE3-208ENST00000614678 GAGE2EQ4V326 116 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 TOMM6Q96B49 74 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 GAGE2DQ9UEU5 116 aa3.56□□□□□ -1.84
CPNE3-208ENST00000614678 TEX43Q6ZNM6 134 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 PHF5AQ7RTV0 110 aaKnown RBP3.55□□□□□ -1.84
CPNE3-208ENST00000614678 RNF213Q63HN8 5207 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 SCGB3A1Q96QR1 104 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 PYGO1Q9Y3Y4 419 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 LRP2P98164 4655 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.55□□□□□ -1.84
CPNE3-208ENST00000614678 TMEM238C9JI98 176 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 TRGC2P03986 189 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 SPINK8P0C7L1 97 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 VCX2Q9H322 139 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 LPAP08519 4548 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 A0A087WZ39 114 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 TSTD3H0UI37 97 aa3.55□□□□□ -1.84
CPNE3-208ENST00000614678 RPL37AP61513 92 aaKnown RBP3.55□□□□□ -1.84
CPNE3-208ENST00000614678 PACRGQ96M98 296 aaPredicted RBP3.55□□□□□ -1.84
CPNE3-208ENST00000614678 NDUFA6P56556 154 aa3.54□□□□□ -1.84
CPNE3-208ENST00000614678 TMEM18Q96B42 140 aa3.54□□□□□ -1.84
CPNE3-208ENST00000614678 XAGE1AQ9HD64 81 aa3.54□□□□□ -1.84
CPNE3-208ENST00000614678 NXT2Q9NPJ8 142 aaKnown RBP3.54□□□□□ -1.84
CPNE3-208ENST00000614678 PLAC8Q9NZF1 115 aa3.54□□□□□ -1.84
CPNE3-208ENST00000614678 LAMTOR2Q9Y2Q5 125 aa3.54□□□□□ -1.84
CPNE3-208ENST00000614678 FABP4P15090 132 aa3.54□□□□□ -1.84
CPNE3-208ENST00000614678 ORMDL2Q53FV1 153 aa3.54□□□□□ -1.84
CPNE3-208ENST00000614678 C9orf129Q5T035 196 aaKnown RBP3.54□□□□□ -1.84
CPNE3-208ENST00000614678 LINC01546A6NGU7 62 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 FAM19A5Q7Z5A7 132 aaPredicted RBP3.53□□□□□ -1.84
CPNE3-208ENST00000614678 CST9LQ9H4G1 147 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 SMIM1B2RUZ4 78 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 APOMO95445 188 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 SERTAD4-AS1Q5TG53 156 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 FA2HQ7L5A8 372 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 ERASQ7Z444 233 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 TRAV9-1A0A075B6T8 112 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 H0Y8G0 127 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 M0R143 59 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 PDZD11Q5EBL8 140 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 ZNF625Q96I27 306 aaPredicted RBP3.53□□□□□ -1.84
CPNE3-208ENST00000614678 PMCHL2Q9BQD1 86 aa3.53□□□□□ -1.84
CPNE3-208ENST00000614678 HSBP1L1C9JCN9 74 aa3.52□□□□□ -1.85
CPNE3-208ENST00000614678 Q8NDZ9 215 aa3.52□□□□□ -1.85
CPNE3-208ENST00000614678 PLA2G1BP04054 148 aaKnown RBP3.52□□□□□ -1.85
CPNE3-208ENST00000614678 MT1HL1P0DM35 61 aa3.52□□□□□ -1.85
CPNE3-208ENST00000614678 TIMM17AQ99595 171 aa3.52□□□□□ -1.85
CPNE3-208ENST00000614678 Q6ZN92 141 aa3.52□□□□□ -1.85
CPNE3-208ENST00000614678 C11orf86A6NJI1 115 aa3.51□□□□□ -1.85
CPNE3-208ENST00000614678 MT-ND6P03923 174 aa3.51□□□□□ -1.85
CPNE3-208ENST00000614678 PRR3P79522 188 aaKnown RBP3.51□□□□□ -1.85
CPNE3-208ENST00000614678 PSORS1C2Q9UIG4 136 aa3.51□□□□□ -1.85
CPNE3-208ENST00000614678 A0A0U1RRA0 63 aa3.51□□□□□ -1.85
CPNE3-208ENST00000614678 SERF1AO75920 110 aa3.51□□□□□ -1.85
CPNE3-208ENST00000614678 S100A2P29034 98 aa3.51□□□□□ -1.85
CPNE3-208ENST00000614678 BAGE3Q86Y29 109 aa3.51□□□□□ -1.85
CPNE3-208ENST00000614678 GEMIN7Q9H840 131 aaKnown RBP3.51□□□□□ -1.85
CPNE3-208ENST00000614678 MRPL35Q9NZE8 188 aaKnown RBP3.51□□□□□ -1.85
CPNE3-208ENST00000614678 LOC107984640A0A0U1RRK4 108 aa3.5□□□□□ -1.85
CPNE3-208ENST00000614678 NDUFA1O15239 70 aa3.5□□□□□ -1.85
CPNE3-208ENST00000614678 ZNF22P17026 224 aaPredicted RBP3.5□□□□□ -1.85
CPNE3-208ENST00000614678 C2orf48Q96LS8 159 aa3.5□□□□□ -1.85
CPNE3-208ENST00000614678 C6orf226Q5I0X4 101 aa3.5□□□□□ -1.85
CPNE3-208ENST00000614678 Q6ZVH6 145 aa3.5□□□□□ -1.85
CPNE3-208ENST00000614678 HBDP02042 147 aa3.5□□□□□ -1.85
CPNE3-208ENST00000614678 PMVKQ15126 192 aa3.5□□□□□ -1.85
CPNE3-208ENST00000614678 FAM19A3Q7Z5A8 133 aa3.5□□□□□ -1.85
CPNE3-208ENST00000614678 GAGE10A6NGK3 116 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 MUC2Q02817 5179 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 IGLV5-45A0A087WSX0 123 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 TINCRA0A1B0GVN0 87 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 PFN2P35080 140 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 UBE2V1Q13404 147 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 MIEN1Q9BRT3 115 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 RPL37AP8A6NKH3 93 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 HERVK_113P63121 156 aa3.49□□□□□ -1.85
CPNE3-208ENST00000614678 K7EMI3 77 aa3.48□□□□□ -1.85
CPNE3-208ENST00000614678 CKS1BP61024 79 aa3.48□□□□□ -1.85
CPNE3-208ENST00000614678 TMEM170BQ5T4T1 132 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms