RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 TRAV10A0A0B4J240 114 aa3.6□□□□□ -1.83
VPS13D-213ENST00000613099 C6orf99Q4VX62 202 aa3.6□□□□□ -1.83
VPS13D-213ENST00000613099 ZNF503-AS2A6NEH8 195 aa3.6□□□□□ -1.83
VPS13D-213ENST00000613099 MDFIQ99750 246 aa3.6□□□□□ -1.83
VPS13D-213ENST00000613099 H0Y9J4 135 aa3.6□□□□□ -1.83
VPS13D-213ENST00000613099 Q6ZQY7 126 aa3.6□□□□□ -1.83
VPS13D-213ENST00000613099 SEM1Q6ZVN7 128 aa3.6□□□□□ -1.83
VPS13D-213ENST00000613099 NOP10Q9NPE3 64 aaKnown RBP3.6□□□□□ -1.83
VPS13D-213ENST00000613099 C9orf66Q5T8R8 295 aa3.59□□□□□ -1.83
VPS13D-213ENST00000613099 IGHV7-81A0A0B4J1V7 117 aa3.59□□□□□ -1.83
VPS13D-213ENST00000613099 PRO3102Q9H379 93 aa3.59□□□□□ -1.83
VPS13D-213ENST00000613099 IGLV5-39A0A0G2JS06 123 aa3.59□□□□□ -1.84
VPS13D-213ENST00000613099 RNASE3P12724 160 aaKnown RBP3.59□□□□□ -1.84
VPS13D-213ENST00000613099 CAMK2N2Q96S95 79 aa3.59□□□□□ -1.84
VPS13D-213ENST00000613099 M0R378 163 aa3.59□□□□□ -1.84
VPS13D-213ENST00000613099 LINC00575Q6W349 94 aa3.59□□□□□ -1.84
VPS13D-213ENST00000613099 C11orf21Q9P2W6 132 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 DEFB124Q8NES8 71 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 DEFB113Q30KQ7 82 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 C1orf64Q8NEQ6 169 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 SMAD5-AS1Q9Y6J3 95 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 HTN3P15516 51 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 NSD1Q96L73 2696 aaPredicted RBP3.58□□□□□ -1.84
VPS13D-213ENST00000613099 C3orf84H3BNL1 204 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 ZNF843Q8N446 348 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 LINC00242Q5T6M2 205 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 LINC00337Q8N6G1 96 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 LOC101927531A0A1B0GV80 90 aa3.58□□□□□ -1.84
VPS13D-213ENST00000613099 GYPEP15421 78 aa3.57□□□□□ -1.84
VPS13D-213ENST00000613099 XAGE1AQ9HD64 81 aa3.57□□□□□ -1.84
VPS13D-213ENST00000613099 KLLNB2CW77 178 aa3.57□□□□□ -1.84
VPS13D-213ENST00000613099 A8MUN3 132 aa3.57□□□□□ -1.84
VPS13D-213ENST00000613099 WISP2O76076 250 aa3.57□□□□□ -1.84
VPS13D-213ENST00000613099 RUSC1-AS1Q66K80 236 aa3.57□□□□□ -1.84
VPS13D-213ENST00000613099 SMIM1B2RUZ4 78 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 TM2D3Q9BRN9 247 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 Q6ZSV7 163 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 SPATA3Q8NHX4 192 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 CHD6Q8TD26 2715 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 CTSZQ9UBR2 303 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 IGLV5-45A0A087WSX0 123 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 LY6LH3BQJ8 138 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 Q8IZM0 81 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 C4orf3Q8WVX3 66 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 TP53AIP1Q9HCN2 124 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 CDC42SE2Q9NRR3 84 aa3.56□□□□□ -1.84
VPS13D-213ENST00000613099 CHCHD10Q8WYQ3 142 aaPredicted RBP3.56□□□□□ -1.84
VPS13D-213ENST00000613099 IGLV1-47P01700 117 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 IGHV4-59P01825 116 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 COL6A5A8TX70 2615 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 H0Y9P7 68 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 Q6ZQT0 140 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 PSCAO43653 123 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 TMEM105Q8N8V8 129 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 IGHV4-30-2A0A087WSY4 118 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 WFDC13Q8IUB5 93 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 C1orf229Q6ZS94 237 aaPredicted RBP3.55□□□□□ -1.84
VPS13D-213ENST00000613099 GRNP28799 593 aaKnown RBP3.55□□□□□ -1.84
VPS13D-213ENST00000613099 CDC42SE1Q9NRR8 79 aa3.55□□□□□ -1.84
VPS13D-213ENST00000613099 NBEAL1Q6ZS30 2694 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 DEFB114Q30KQ6 69 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 CLPSL2Q6UWE3 100 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 Q8N2B8 174 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 E7EQL1 145 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 CFAP46Q8IYW2 2715 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 FAM218AQ96MZ4 157 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 Q6ZTI0 123 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 OBSCN-AS1Q96MR7 158 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 MAP1AP78559 2803 aaPredicted RBP3.54□□□□□ -1.84
VPS13D-213ENST00000613099 MGAM2Q2M2H8 2515 aa3.54□□□□□ -1.84
VPS13D-213ENST00000613099 C11orf72Q8NBR9 251 aa3.53□□□□□ -1.84
VPS13D-213ENST00000613099 IGLV10-54A0A075B6I4 117 aa3.53□□□□□ -1.84
VPS13D-213ENST00000613099 SYCNQ0VAF6 134 aa3.53□□□□□ -1.84
VPS13D-213ENST00000613099 KPRPQ5T749 579 aaPredicted RBP3.53□□□□□ -1.84
VPS13D-213ENST00000613099 LINC01554Q52M75 96 aa3.53□□□□□ -1.84
VPS13D-213ENST00000613099 DNAJC9-AS1A6NH13 148 aa3.53□□□□□ -1.84
VPS13D-213ENST00000613099 COX6A2Q02221 97 aa3.53□□□□□ -1.85
VPS13D-213ENST00000613099 ACYP2P14621 99 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 C1orf137Q5JT78 98 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 SPANXA2-OT1Q8N9U9 137 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 C5orf56Q8N8D9 126 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 A0A0J9YWU9 116 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 PRR9Q5T870 116 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 A0A1B0GUV1 79 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 LY6HO94772 140 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 LYPD5Q6UWN5 251 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 FP248Q71RG6 208 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-213ENST00000613099 C6orf223Q8N319 242 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 LITAFQ99732 161 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 J3QKU1 62 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 Q8N9W7 124 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 NOTCH1P46531 2555 aa3.52□□□□□ -1.85
VPS13D-213ENST00000613099 DEFB1P60022 68 aa3.51□□□□□ -1.85
VPS13D-213ENST00000613099 A0A1B0GU69 56 aa3.51□□□□□ -1.85
VPS13D-213ENST00000613099 REG3AQ06141 175 aa3.51□□□□□ -1.85
VPS13D-213ENST00000613099 SPART-AS1P0CW21 52 aa3.51□□□□□ -1.85
VPS13D-213ENST00000613099 UNQ9165/PRO28630Q6UXU0 137 aa3.51□□□□□ -1.85
VPS13D-213ENST00000613099 LINC00588Q9Y4M8 146 aa3.51□□□□□ -1.85
VPS13D-213ENST00000613099 TEP1Q99973 2627 aaKnown RBP3.51□□□□□ -1.85
VPS13D-213ENST00000613099 PRR3P79522 188 aaKnown RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms