RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 SYS1-DBNDD2H3BUS1 97 aa6.74□□□□□ -1.33
SYNE1-240ENST00000610489 ZNF22P17026 224 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-240ENST00000610489 PET117Q6UWS5 81 aa6.74□□□□□ -1.33
SYNE1-240ENST00000610489 LINC00526Q96FQ7 95 aa6.74□□□□□ -1.33
SYNE1-240ENST00000610489 H3BRM9 83 aa6.73□□□□□ -1.33
SYNE1-240ENST00000610489 SLPIP03973 132 aa6.73□□□□□ -1.33
SYNE1-240ENST00000610489 CNBPP62633 177 aaKnown RBP6.73□□□□□ -1.33
SYNE1-240ENST00000610489 SPAG11BQ08648 103 aa6.73□□□□□ -1.33
SYNE1-240ENST00000610489 LRP1BQ9NZR2 4599 aa6.72□□□□□ -1.33
SYNE1-240ENST00000610489 PCP4L1A6NKN8 68 aa6.72□□□□□ -1.33
SYNE1-240ENST00000610489 SMIM1B2RUZ4 78 aa6.72□□□□□ -1.33
SYNE1-240ENST00000610489 SPINK8P0C7L1 97 aa6.72□□□□□ -1.33
SYNE1-240ENST00000610489 PLNP26678 52 aa6.72□□□□□ -1.33
SYNE1-240ENST00000610489 TMEM170BQ5T4T1 132 aa6.72□□□□□ -1.33
SYNE1-240ENST00000610489 C2orf48Q96LS8 159 aa6.72□□□□□ -1.33
SYNE1-240ENST00000610489 PMCHL2Q9BQD1 86 aa6.72□□□□□ -1.33
SYNE1-240ENST00000610489 C20orf202A1L168 122 aa6.71□□□□□ -1.34
SYNE1-240ENST00000610489 C16orf90A8MZG2 172 aa6.71□□□□□ -1.34
SYNE1-240ENST00000610489 DPM2O94777 84 aa6.71□□□□□ -1.34
SYNE1-240ENST00000610489 KIAA0087Q14695 138 aa6.71□□□□□ -1.34
SYNE1-240ENST00000610489 LINC01545Q5VT33 79 aa6.71□□□□□ -1.34
SYNE1-240ENST00000610489 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-240ENST00000610489 IGLV5-39A0A0G2JS06 123 aa6.7□□□□□ -1.34
SYNE1-240ENST00000610489 C9orf118A6NHY6 69 aa6.7□□□□□ -1.34
SYNE1-240ENST00000610489 TSTD3H0UI37 97 aa6.7□□□□□ -1.34
SYNE1-240ENST00000610489 Q8IZM0 81 aa6.7□□□□□ -1.34
SYNE1-240ENST00000610489 CAMK2N2Q96S95 79 aa6.7□□□□□ -1.34
SYNE1-240ENST00000610489 TOMM7Q9P0U1 55 aa6.7□□□□□ -1.34
SYNE1-240ENST00000610489 DNAH8Q96JB1 4490 aa6.7□□□□□ -1.34
SYNE1-240ENST00000610489 F8WDY8 70 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 IGKCP01834 107 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 PRSS2P07478 247 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 GCSHP23434 173 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 SYCNQ0VAF6 134 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 C9orf163Q8N9P6 203 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 CARD19Q96LW7 228 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 VAMP8Q9BV40 100 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 TMEM223A0PJW6 202 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 NDUFA1O15239 70 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 LINC01620Q4KN68 170 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 Q6ZRU5 148 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 COX7B2Q8TF08 81 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 PRO1933Q9H354 126 aa6.69□□□□□ -1.34
SYNE1-240ENST00000610489 C6orf226Q5I0X4 101 aa6.68□□□□□ -1.34
SYNE1-240ENST00000610489 C2orf82Q6UX34 121 aa6.68□□□□□ -1.34
SYNE1-240ENST00000610489 KRTAP10-1P60331 282 aa6.67□□□□□ -1.34
SYNE1-240ENST00000610489 C10orf25Q5T742 122 aa6.67□□□□□ -1.34
SYNE1-240ENST00000610489 CXCL5P42830 114 aa6.67□□□□□ -1.34
SYNE1-240ENST00000610489 CKS1BP61024 79 aa6.67□□□□□ -1.34
SYNE1-240ENST00000610489 UNQ6190/PRO20217Q6UXQ8 127 aa6.67□□□□□ -1.34
SYNE1-240ENST00000610489 PAM16Q9Y3D7 125 aa6.67□□□□□ -1.34
SYNE1-240ENST00000610489 APOBP04114 4563 aaKnown RBP6.66□□□□□ -1.34
SYNE1-240ENST00000610489 LINC00587B1AMM8 73 aa6.66□□□□□ -1.34
SYNE1-240ENST00000610489 DDTP30046 118 aa6.66□□□□□ -1.34
SYNE1-240ENST00000610489 SPATA45Q537H7 98 aa6.66□□□□□ -1.34
SYNE1-240ENST00000610489 C6orf48Q9UBA6 75 aa6.66□□□□□ -1.34
SYNE1-240ENST00000610489 TRBV30A0A0K0K1B3 111 aa6.65□□□□□ -1.34
SYNE1-240ENST00000610489 HERVK_113P61574 105 aa6.65□□□□□ -1.34
SYNE1-240ENST00000610489 SDIM1Q6ZPB5 146 aa6.65□□□□□ -1.34
SYNE1-240ENST00000610489 ATOH7Q8N100 152 aa6.65□□□□□ -1.34
SYNE1-240ENST00000610489 MIEN1Q9BRT3 115 aa6.64□□□□□ -1.35
SYNE1-240ENST00000610489 PKIGQ9Y2B9 76 aa6.64□□□□□ -1.35
SYNE1-240ENST00000610489 HSBP1L1C9JCN9 74 aa6.63□□□□□ -1.35
SYNE1-240ENST00000610489 LEPROTO15243 131 aa6.63□□□□□ -1.35
SYNE1-240ENST00000610489 MAJINQ3KP22 176 aa6.63□□□□□ -1.35
SYNE1-240ENST00000610489 PLEKHB2Q96CS7 222 aa6.63□□□□□ -1.35
SYNE1-240ENST00000610489 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-240ENST00000610489 LOC107984640A0A0U1RRK4 108 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 E9PLD3 99 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 TSPEAR-AS2P59090 65 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 C9orf116Q5BN46 136 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-240ENST00000610489 SFTA2Q6UW10 78 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 Q6ZSA8 131 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 STPG4Q8N801 248 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 ZNF625Q96I27 306 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-240ENST00000610489 UQCR10Q9UDW1 63 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 BIRC6Q9NR09 4857 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 J3QQQ9 107 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 TLX1NBP0CAT3 122 aa6.62□□□□□ -1.35
SYNE1-240ENST00000610489 A0A096LNI7 61 aa6.61□□□□□ -1.35
SYNE1-240ENST00000610489 CHTF8P0CG12 524 aa6.61□□□□□ -1.35
SYNE1-240ENST00000610489 RPL18AQ02543 176 aaKnown RBP6.61□□□□□ -1.35
SYNE1-240ENST00000610489 NDUFA12Q9UI09 145 aa6.61□□□□□ -1.35
SYNE1-240ENST00000610489 IGKV2-24A0A0C4DH68 120 aa6.6□□□□□ -1.35
SYNE1-240ENST00000610489 NDUFC2-KCTD14E9PQ53 114 aa6.6□□□□□ -1.35
SYNE1-240ENST00000610489 PANO1I0J062 215 aa6.6□□□□□ -1.35
SYNE1-240ENST00000610489 CIRBPQ14011 172 aaKnown RBP6.6□□□□□ -1.35
SYNE1-240ENST00000610489 HSPG2P98160 4391 aa6.6□□□□□ -1.35
SYNE1-240ENST00000610489 LGALS3P17931 250 aaKnown RBP6.59□□□□□ -1.35
SYNE1-240ENST00000610489 GAGE2BQ13066 116 aa6.59□□□□□ -1.35
SYNE1-240ENST00000610489 Q6ZRP5 223 aa6.59□□□□□ -1.35
SYNE1-240ENST00000610489 SPACA4Q8TDM5 124 aa6.59□□□□□ -1.35
SYNE1-240ENST00000610489 C14orf144Q96I85 54 aa6.59□□□□□ -1.35
SYNE1-240ENST00000610489 IGKV2D-26A0A0A0MRZ7 120 aa6.59□□□□□ -1.35
SYNE1-240ENST00000610489 MYMXA0A1B0GTQ4 84 aa6.59□□□□□ -1.35
SYNE1-240ENST00000610489 NMUP48645 174 aa6.59□□□□□ -1.35
SYNE1-240ENST00000610489 LINC00474Q9P2X8 69 aa6.59□□□□□ -1.35
SYNE1-240ENST00000610489 KIAA1109Q2LD37 5005 aa6.58□□□□□ -1.36
SYNE1-240ENST00000610489 TRIAP1O43715 76 aa6.58□□□□□ -1.36
SYNE1-240ENST00000610489 CDK2AP2O75956 126 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms