RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MPLKIPQ8TAP9 179 aa14.49□□□□□ -0.09
UPF1-207ENST00000599848 AMELXQ99217 191 aa14.49□□□□□ -0.09
UPF1-207ENST00000599848 MUC22E2RYF6 1773 aaPredicted RBP14.46□□□□□ -0.09
UPF1-207ENST00000599848 X6R8D5 127 aa14.46□□□□□ -0.09
UPF1-207ENST00000599848 ADAMTS20P59510 1910 aa14.46□□□□□ -0.1
UPF1-207ENST00000599848 KIF25-AS1Q9Y6Z4 181 aa14.45□□□□□ -0.1
UPF1-207ENST00000599848 TRBV7-6A0A0J9YX20 115 aa14.45□□□□□ -0.1
UPF1-207ENST00000599848 C16orf90A8MZG2 172 aa14.45□□□□□ -0.1
UPF1-207ENST00000599848 PCDH15Q96QU1 1955 aa14.44□□□□□ -0.1
UPF1-207ENST00000599848 J3QL48 77 aa14.44□□□□□ -0.1
UPF1-207ENST00000599848 LINC00208Q96KT6 92 aa14.44□□□□□ -0.1
UPF1-207ENST00000599848 A0A087WSZ3 146 aa14.44□□□□□ -0.1
UPF1-207ENST00000599848 LRP4O75096 1905 aa14.43□□□□□ -0.1
UPF1-207ENST00000599848 KRTAP24-1Q3LI83 254 aa14.43□□□□□ -0.1
UPF1-207ENST00000599848 FAM30AQ9NZY2 134 aa14.43□□□□□ -0.1
UPF1-207ENST00000599848 Q6ZRU5 148 aa14.42□□□□□ -0.1
UPF1-207ENST00000599848 C22orf24Q9Y442 160 aa14.42□□□□□ -0.1
UPF1-207ENST00000599848 CRYGAP11844 174 aa14.42□□□□□ -0.1
UPF1-207ENST00000599848 TRAV7A0A075B6U4 112 aa14.41□□□□□ -0.1
UPF1-207ENST00000599848 Q6ZRP5 223 aa14.41□□□□□ -0.1
UPF1-207ENST00000599848 SMCR5Q8TEV8 140 aa14.41□□□□□ -0.1
UPF1-207ENST00000599848 MYO9AB2RTY4 2548 aa14.41□□□□□ -0.1
UPF1-207ENST00000599848 LINC00694P0DN24 101 aa14.41□□□□□ -0.1
UPF1-207ENST00000599848 SRCAPQ6ZRS2 3230 aa14.4□□□□□ -0.1
UPF1-207ENST00000599848 PCNX3Q9H6A9 2034 aa14.39□□□□□ -0.11
UPF1-207ENST00000599848 LINC01547P58512 204 aaPredicted RBP14.39□□□□□ -0.11
UPF1-207ENST00000599848 NBDYA0A0U1RRE5 68 aa14.38□□□□□ -0.11
UPF1-207ENST00000599848 JMJD1CQ15652 2540 aa14.38□□□□□ -0.11
UPF1-207ENST00000599848 MT-ATP8P03928 68 aa14.37□□□□□ -0.11
UPF1-207ENST00000599848 A0A1B0GW54 56 aa14.36□□□□□ -0.11
UPF1-207ENST00000599848 KIAA1549Q9HCM3 1950 aa14.36□□□□□ -0.11
UPF1-207ENST00000599848 COX7CP15954 63 aa14.35□□□□□ -0.11
UPF1-207ENST00000599848 hDV103S1A0JD37 113 aa14.35□□□□□ -0.11
UPF1-207ENST00000599848 SNURFQ9Y675 71 aa14.35□□□□□ -0.11
UPF1-207ENST00000599848 C2CD3Q4AC94 2353 aa14.35□□□□□ -0.11
UPF1-207ENST00000599848 XGP55808 180 aa14.34□□□□□ -0.11
UPF1-207ENST00000599848 LINC00575Q6W349 94 aa14.33□□□□□ -0.12
UPF1-207ENST00000599848 RTL8CO15255 209 aa14.32□□□□□ -0.12
UPF1-207ENST00000599848 PRLHP81277 87 aa14.32□□□□□ -0.12
UPF1-207ENST00000599848 TP53AIP1Q9HCN2 124 aa14.32□□□□□ -0.12
UPF1-207ENST00000599848 CELA1Q9UNI1 258 aa14.32□□□□□ -0.12
UPF1-207ENST00000599848 PRR4Q16378 134 aa14.31□□□□□ -0.12
UPF1-207ENST00000599848 ZFYVE26Q68DK2 2539 aa14.3□□□□□ -0.12
UPF1-207ENST00000599848 H0Y9P7 68 aa14.3□□□□□ -0.12
UPF1-207ENST00000599848 SBSPONQ8IVN8 264 aa14.29□□□□□ -0.12
UPF1-207ENST00000599848 HCG22E2RYF7 251 aa14.29□□□□□ -0.12
UPF1-207ENST00000599848 SPACA4Q8TDM5 124 aa14.29□□□□□ -0.12
UPF1-207ENST00000599848 Q8NBF4 154 aa14.28□□□□□ -0.12
UPF1-207ENST00000599848 CHD8Q9HCK8 2581 aa14.28□□□□□ -0.12
UPF1-207ENST00000599848 TYMSOSQ8TAI1 123 aa14.28□□□□□ -0.12
UPF1-207ENST00000599848 GAS8-AS1O95177 125 aa14.28□□□□□ -0.12
UPF1-207ENST00000599848 LRRK2Q5S007 2527 aa14.27□□□□□ -0.12
UPF1-207ENST00000599848 C2orf91Q6ZV80 131 aa14.27□□□□□ -0.12
UPF1-207ENST00000599848 C11orf72Q8NBR9 251 aa14.27□□□□□ -0.12
UPF1-207ENST00000599848 LINC00315P59091 139 aa14.27□□□□□ -0.13
UPF1-207ENST00000599848 Q6Q795 121 aa14.27□□□□□ -0.13
UPF1-207ENST00000599848 SPATA3Q8NHX4 192 aa14.26□□□□□ -0.13
UPF1-207ENST00000599848 SMIM26A0A096LP01 95 aa14.25□□□□□ -0.13
UPF1-207ENST00000599848 RETNLBQ9BQ08 111 aa14.25□□□□□ -0.13
UPF1-207ENST00000599848 PTPRSQ13332 1948 aa14.25□□□□□ -0.13
UPF1-207ENST00000599848 SPINK1P00995 79 aa14.24□□□□□ -0.13
UPF1-207ENST00000599848 PRR3P79522 188 aaKnown RBP14.23□□□□□ -0.13
UPF1-207ENST00000599848 Q6ZSN1 163 aa14.23□□□□□ -0.13
UPF1-207ENST00000599848 TLN1Q9Y490 2541 aaKnown RBP14.23□□□□□ -0.13
UPF1-207ENST00000599848 PLXNB1O43157 2135 aa14.22□□□□□ -0.13
UPF1-207ENST00000599848 A0A087WYN8 130 aa14.22□□□□□ -0.13
UPF1-207ENST00000599848 MOBPQ13875 183 aa14.22□□□□□ -0.13
UPF1-207ENST00000599848 RAI1Q7Z5J4 1906 aaPredicted RBP14.22□□□□□ -0.13
UPF1-207ENST00000599848 TRBV7-7A0A0K0K1E9 115 aa14.22□□□□□ -0.13
UPF1-207ENST00000599848 IGKV2D-30A0A075B6S6 120 aa14.21□□□□□ -0.13
UPF1-207ENST00000599848 IGKV2-30P06310 120 aa14.21□□□□□ -0.13
UPF1-207ENST00000599848 YPEL4Q96NS1 127 aa14.21□□□□□ -0.13
UPF1-207ENST00000599848 LINC00167Q96N53 147 aa14.21□□□□□ -0.13
UPF1-207ENST00000599848 ABCA12Q86UK0 2595 aa14.2□□□□□ -0.14
UPF1-207ENST00000599848 PCOTHQ58A44 107 aa14.19□□□□□ -0.14
UPF1-207ENST00000599848 RPL37AP61513 92 aaKnown RBP14.19□□□□□ -0.14
UPF1-207ENST00000599848 ATP11AUNQ6ZP68 121 aa14.19□□□□□ -0.14
UPF1-207ENST00000599848 Q8N3U1 123 aa14.18□□□□□ -0.14
UPF1-207ENST00000599848 PIEZO2Q9H5I5 2752 aa14.17□□□□□ -0.14
UPF1-207ENST00000599848 HCFC1P51610 2035 aa14.17□□□□□ -0.14
UPF1-207ENST00000599848 TET2Q6N021 2002 aaPredicted RBP14.16□□□□□ -0.14
UPF1-207ENST00000599848 C7orf65Q6ZTY9 151 aa14.16□□□□□ -0.14
UPF1-207ENST00000599848 IGHV3OR16-9A0A0B4J2B5 98 aa14.16□□□□□ -0.14
UPF1-207ENST00000599848 IGLV5-39A0A0G2JS06 123 aa14.16□□□□□ -0.14
UPF1-207ENST00000599848 CXCL6P80162 114 aa14.16□□□□□ -0.14
UPF1-207ENST00000599848 ADAMTSL4-AS1Q5T5F5 129 aa14.13□□□□□ -0.15
UPF1-207ENST00000599848 LINC00336Q6ZUF6 198 aa14.13□□□□□ -0.15
UPF1-207ENST00000599848 TSPEAR-AS2P59090 65 aa14.12□□□□□ -0.15
UPF1-207ENST00000599848 ZNF462Q96JM2 2506 aa14.12□□□□□ -0.15
UPF1-207ENST00000599848 ARHGAP32A7KAX9 2087 aa14.11□□□□□ -0.15
UPF1-207ENST00000599848 BCE1O60756 84 aa14.1□□□□□ -0.15
UPF1-207ENST00000599848 C1orf64Q8NEQ6 169 aa14.1□□□□□ -0.15
UPF1-207ENST00000599848 EXPH5Q8NEV8 1989 aa14.1□□□□□ -0.15
UPF1-207ENST00000599848 SPAG11AQ6PDA7 123 aa14.1□□□□□ -0.15
UPF1-207ENST00000599848 KIAA0087Q14695 138 aa14.09□□□□□ -0.15
UPF1-207ENST00000599848 C6orf48Q9UBA6 75 aa14.09□□□□□ -0.15
UPF1-207ENST00000599848 LINC00588Q9Y4M8 146 aa14.09□□□□□ -0.15
UPF1-207ENST00000599848 GVQW2A0A096LPI5 108 aaPredicted RBP14.09□□□□□ -0.15
UPF1-207ENST00000599848 C8orf87E5RJ46 101 aa14.09□□□□□ -0.15
UPF1-207ENST00000599848 ACYP2P14621 99 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms